chr3 : 27,719,373 27,720,284
911 bp 46 TFs 2 linked genes
This 911 bp open chromatin element is linked to EOMES and LINC02084 and is bound by 46 transcription factors.
Linked Genes
2 genes
Gene Expression Dist. to TSS Distance Link type
EOMES 2.4 kb Proximal Proximity
LINC02084 6.5 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:27,714,373 – 27,725,284
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
46 transcription factors
Source
Cell type
APC 1 dataset
ChIP HCT-116 GSE103894.APC.HCT-116 183 bp overlap
ASH2L 2 datasets
ChIP WA01 ENCSR850KIP.ASH2L.WA01 296 bp overlap
ChIP WA01 ENCSR850KIP.ASH2L.WA01 221 bp overlap
BCOR 2 datasets
ChIP WA01 GSE104690.BCOR.WA01 688 bp overlap
ChIP WA01_KDM2B_KO GSE104690.BCOR.WA01_KDM2B_KO 477 bp overlap
BRD1 2 datasets
ChIP HUES-64 GSE104059.BRD1.HUES-64 490 bp overlap
ChIP HUES-64 GSE104059.BRD1.HUES-64 152 bp overlap
BRD3 1 dataset
ChIP HEK293T GSE39579.BRD3.HEK293T 130 bp overlap
CBX8 2 datasets
ChIP H1 ENCFF095JHA 344 bp overlap
ChIP H1 ENCFF095JHA 133 bp overlap
CEBPA 1 dataset
ChIP THP-1_1-25D_24h GSE124032.CEBPA.THP-1_1-25D_24h 106 bp overlap
CHD1 1 dataset
ChIP WA01 ENCSR000AQK.CHD1.WA01 174 bp overlap
CTCF 2 datasets
ChIP endodermal cell ENCFF471YCZ 449 bp overlap
ChIP endodermal cell ENCFF471YCZ 461 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF460KDD 251 bp overlap
E2F6 2 datasets
ChIP H1 ENCFF785DWK 389 bp overlap
ChIP WA01 ENCSR000BSI.E2F6.WA01 358 bp overlap
E2F8 1 dataset
ChIP GM12878 ENCSR793HVL.E2F8.GM12878 206 bp overlap
EZH2 20 datasets
ChIP B-cell ENCSR000AUZ.EZH2.B-cell 70 bp overlap
ChIP GM23338 ENCFF613YON 470 bp overlap
ChIP GM23338 ENCFF886DXX 184 bp overlap
ChIP H1 ENCFF232NZA 911 bp overlap
ChIP HUVEC-C GSE109625.EZH2.HUVEC-C 270 bp overlap
ChIP HUVEC-C_VEGF_12h GSE109625.EZH2.HUVEC-C_VEGF_12h 240 bp overlap
ChIP HUVEC-C_VEGF_1h GSE109625.EZH2.HUVEC-C_VEGF_1h 492 bp overlap
ChIP HUVEC-C_VEGF_4h GSE109625.EZH2.HUVEC-C_VEGF_4h 330 bp overlap
ChIP Hep-G2 ENCSR000ARI.EZH2.Hep-G2 327 bp overlap
ChIP endothelial cell of umbilical vein ENCFF539AKL 898 bp overlap
ChIP fibroblast_DERMAL ENCSR000ASE.EZH2.fibroblast_DERMAL 404 bp overlap
ChIP fibroblast_LUNG ENCSR000ARO.EZH2.fibroblast_LUNG 305 bp overlap
ChIP hepatocyte ENCFF118DKH 280 bp overlap
ChIP hepatocyte ENCFF118DKH 71 bp overlap
ChIP hepatocyte ENCFF552DZB 279 bp overlap
ChIP hepatocyte ENCFF552DZB 279 bp overlap
ChIP neural ENCSR511CUH.EZH2.neural 431 bp overlap
ChIP neural cell ENCFF610EPB 320 bp overlap
ChIP neural progenitor cell ENCFF018MKA 911 bp overlap
ChIP neural progenitor cell ENCFF472NFV 911 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 274 bp overlap
ChIP DE DE-FOXA2-2 408 bp overlap
GATA6 1 dataset
ChIP DE_D2 S55-DE-d2-GATA6-exp2 146 bp overlap
JARID2 7 datasets
ChIP AMIPS6 GSE48516.JARID2.AMIPS6 185 bp overlap
ChIP EDOMIPS2 GSE48516.JARID2.EDOMIPS2 331 bp overlap
ChIP MRC-5_IPS25 GSE48516.JARID2.MRC-5_IPS25 274 bp overlap
ChIP MRC-5_IPS25_MEG3 GSE48515.JARID2.MRC-5_IPS25_MEG3 166 bp overlap
ChIP UTEIPS11 GSE48516.JARID2.UTEIPS11 263 bp overlap
ChIP UTEIPS11 GSE48516.JARID2.UTEIPS11 325 bp overlap
ChIP UTEIPS4 GSE48516.JARID2.UTEIPS4 275 bp overlap
KMT2A 1 dataset
ChIP blood_cord GSE83671.KMT2A.blood_cord 279 bp overlap
MLLT1 2 datasets
ChIP GM12878 ENCFF995GXC 436 bp overlap
ChIP GM12878 ENCFF995GXC 400 bp overlap
NANOG 1 dataset
ChIP HUES-8 GSE109524.NANOG.HUES-8 911 bp overlap
NUTM1 1 dataset
ChIP NUT_DMSO GSE133122.NUTM1.NUT_DMSO 212 bp overlap
ONECUT1 2 datasets
ChIP H9 ERP004206.ONECUT1.H9 83 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.ONECUT1.pancreatic-progenitor_PP1 174 bp overlap
PCGF2 3 datasets
ChIP fibroblast_MET GSE55605.PCGF2.fibroblast_MET 399 bp overlap
ChIP fibroblast_OHT GSE55605.PCGF2.fibroblast_OHT 278 bp overlap
ChIP fibroblast_OHT GSE55605.PCGF2.fibroblast_OHT 64 bp overlap
POU5F1 1 dataset
ChIP HUES-8 GSE109524.POU5F1.HUES-8 852 bp overlap
PRDM9 1 dataset
Motif ES_0h ES_0h-PRDM9_MA1723.2 20 bp overlap
RBBP5 1 dataset
ChIP WA01 ENCSR000AQC.RBBP5.WA01 162 bp overlap
RELB 2 datasets
ChIP GM12878 ENCSR387QUV.RELB.GM12878 662 bp overlap
ChIP GM12878 ENCSR387QUV.RELB.GM12878 99 bp overlap
REST 1 dataset
ChIP hippocampus GSE144226.REST.hippocampus 255 bp overlap
RNF2 3 datasets
ChIP H1 ENCFF239FFS 311 bp overlap
ChIP H1 ENCFF239FFS 294 bp overlap
ChIP SYO-1_shCt GSE139053.RNF2.SYO-1_shCt 226 bp overlap
RYBP 1 dataset
ChIP WA01 GSE104690.RYBP.WA01 423 bp overlap
SALL3 1 dataset
ChIP hiPSC GSE104863.SALL3.hiPSC 387 bp overlap
SKIL 2 datasets
ChIP GM12878 ENCSR212YKD.SKIL.GM12878 138 bp overlap
ChIP GM12878 ENCSR212YKD.SKIL.GM12878 74 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 557 bp overlap
SP1 2 datasets
ChIP WA01 ENCSR000BIR.SP1.WA01 171 bp overlap
ChIP WA01 ENCSR000BIR.SP1.WA01 487 bp overlap
SP5 1 dataset
Motif ES_0h ES_0h-SP5_MA1965.2 6 bp overlap
SUZ12 7 datasets
ChIP H1 ENCFF881NFR 911 bp overlap
ChIP NCCIT GSE71675.SUZ12.NCCIT 132 bp overlap
ChIP NT2-D1 ENCSR000EXH.SUZ12.NT2-D1 274 bp overlap
ChIP NT2-D1 ENCSR000EXH.SUZ12.NT2-D1 343 bp overlap
ChIP NT2/D1 ENCFF574SXS 534 bp overlap
ChIP WA01 ENCSR000ATS.SUZ12.WA01 338 bp overlap
ChIP WA01 ENCSR000EUQ.SUZ12.WA01 203 bp overlap
TBX21 2 datasets
ChIP CD4_Th1 GSE62482.TBX21.CD4_Th1 136 bp overlap
ChIP GM12878 ENCSR739IHN.TBX21.GM12878 911 bp overlap
TCF12 2 datasets
ChIP H1 ENCFF203EBH 251 bp overlap
ChIP WA01 ENCSR000BIT.TCF12.WA01 404 bp overlap
U2AF1 1 dataset
ChIP Hep-G2 GSE120104.U2AF1.Hep-G2 167 bp overlap
ZBTB24 1 dataset
Motif ES_0h ES_0h-ZBTB24_MA2330.1 10 bp overlap
ZBTB40 2 datasets
ChIP GM12878 ENCFF346DYM 389 bp overlap
ChIP GM12878 ENCSR189YYK.ZBTB40.GM12878 398 bp overlap
ZNF711 1 dataset
ChIP HEK293T GSE145160.ZNF711.HEK293T 355 bp overlap