chr3 : 1,899,266 – 1,900,539
1,273 bp 72 TFs 0 linked genes
This 1.3 kb open chromatin element has no linked target genes and is bound by 72 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:1,894,266 – 1,905,539
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
72 transcription factors
Source
Cell type
ATF2 1 dataset
ChIP Hep-G2 ENCSR047BUZ.ATF2.Hep-G2 249 bp overlap
Alx1 1 dataset
Motif DE_48h DE_48h-Alx1_MA0854.2 8 bp overlap
Alx4 1 dataset
Motif DE_48h DE_48h-Alx4_MA0853.2 12 bp overlap
Arx 1 dataset
Motif DE_48h DE_48h-Arx_MA0874.2 10 bp overlap
Atf1 3 datasets
Motif DE_36h DE_36h-Atf1_MA0604.1 8 bp overlap
Motif DE_48h DE_48h-Atf1_MA0604.1 8 bp overlap
Motif DE_60h DE_60h-Atf1_MA0604.1 8 bp overlap
BARX1 1 dataset
Motif DE_48h DE_48h-BARX1_MA0875.2 6 bp overlap
BRD4 1 dataset
ChIP RH4_shscr GSE140115.BRD4.RH4_shscr 201 bp overlap
BSX 1 dataset
Motif DE_48h DE_48h-BSX_MA0876.2 6 bp overlap
CREB1 3 datasets
ChIP MCF-7 ENCFF341ZEM 417 bp overlap
ChIP MCF-7 ENCSR897JAS.CREB1.MCF-7 349 bp overlap
ChIP MCF-7 ENCSR620DUQ.CREB1.MCF-7 271 bp overlap
CUX1 1 dataset
Motif DE_48h DE_48h-CUX1_MA0754.3 9 bp overlap
DLX1 1 dataset
Motif DE_48h DE_48h-DLX1_MA0879.3 6 bp overlap
DLX6 1 dataset
Motif DE_48h DE_48h-DLX6_MA0882.2 6 bp overlap
Dlx3 1 dataset
Motif DE_48h DE_48h-Dlx3_MA0880.2 6 bp overlap
Dlx4 1 dataset
Motif DE_48h DE_48h-Dlx4_MA0881.2 6 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 337 bp overlap
EZH2 1 dataset
ChIP A-1847_CARM1-KO GSE95643.EZH2.A-1847_CARM1-KO 236 bp overlap
FOS::JUN 3 datasets
Motif DE_36h DE_36h-FOSJUN_MA1126.2 10 bp overlap
Motif DE_48h DE_48h-FOSJUN_MA1126.2 10 bp overlap
Motif DE_60h DE_60h-FOSJUN_MA1126.2 10 bp overlap
FOSB::JUN 3 datasets
Motif DE_36h DE_36h-FOSBJUN_MA1127.1 11 bp overlap
Motif DE_48h DE_48h-FOSBJUN_MA1127.1 11 bp overlap
Motif DE_60h DE_60h-FOSBJUN_MA1127.1 11 bp overlap
FOSB::JUNB 3 datasets
Motif DE_36h DE_36h-FOSBJUNB_MA1136.1 10 bp overlap
Motif DE_48h DE_48h-FOSBJUNB_MA1136.1 10 bp overlap
Motif DE_60h DE_60h-FOSBJUNB_MA1136.1 10 bp overlap
FOSL1::JUND 3 datasets
Motif DE_36h DE_36h-FOSL1JUND_MA1143.2 9 bp overlap
Motif DE_48h DE_48h-FOSL1JUND_MA1143.2 9 bp overlap
Motif DE_60h DE_60h-FOSL1JUND_MA1143.2 9 bp overlap
FOSL2::JUN 3 datasets
Motif DE_36h DE_36h-FOSL2JUN_MA1131.2 10 bp overlap
Motif DE_48h DE_48h-FOSL2JUN_MA1131.2 10 bp overlap
Motif DE_60h DE_60h-FOSL2JUN_MA1131.2 10 bp overlap
FOSL2::JUND 3 datasets
Motif DE_36h DE_36h-FOSL2JUND_MA1145.2 10 bp overlap
Motif DE_48h DE_48h-FOSL2JUND_MA1145.2 10 bp overlap
Motif DE_60h DE_60h-FOSL2JUND_MA1145.2 10 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 379 bp overlap
ChIP DE DE-FOXA2-2 424 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 549 bp overlap
ChIP DE DE-GATA4-2 574 bp overlap
GATA6 9 datasets
ChIP DE DE-GATA6-1 516 bp overlap
ChIP DE DE-GATA6-2 537 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 331 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 552 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 423 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 737 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 529 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 415 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 549 bp overlap
GBX2 1 dataset
Motif DE_48h DE_48h-GBX2_MA0890.2 6 bp overlap
HESX1 1 dataset
Motif DE_48h DE_48h-HESX1_MA0894.2 6 bp overlap
HOXA10 1 dataset
Motif DE_48h DE_48h-HOXA10_MA0899.2 9 bp overlap
HOXA4 3 datasets
Motif DE_36h DE_36h-HOXA4_MA1496.2 7 bp overlap
Motif DE_48h DE_48h-HOXA4_MA1496.2 7 bp overlap
Motif DE_60h DE_60h-HOXA4_MA1496.2 7 bp overlap
HOXA7 1 dataset
Motif DE_48h DE_48h-HOXA7_MA1498.3 6 bp overlap
HOXB4 3 datasets
Motif DE_36h DE_36h-HOXB4_MA1499.2 6 bp overlap
Motif DE_48h DE_48h-HOXB4_MA1499.2 6 bp overlap
Motif DE_60h DE_60h-HOXB4_MA1499.2 6 bp overlap
HOXC4 3 datasets
Motif DE_36h DE_36h-HOXC4_MA1504.2 6 bp overlap
Motif DE_48h DE_48h-HOXC4_MA1504.2 6 bp overlap
Motif DE_60h DE_60h-HOXC4_MA1504.2 6 bp overlap
HOXD4 3 datasets
Motif DE_36h DE_36h-HOXD4_MA1507.2 6 bp overlap
Motif DE_48h DE_48h-HOXD4_MA1507.2 6 bp overlap
Motif DE_60h DE_60h-HOXD4_MA1507.2 6 bp overlap
HOXD9 1 dataset
Motif DE_48h DE_48h-HOXD9_MA0913.3 9 bp overlap
HSF1 1 dataset
ChIP MCF-7_hyperthermia-15min GSE137558.HSF1.MCF-7_hyperthermia-15min 211 bp overlap
Hmx1 1 dataset
Motif DE_48h DE_48h-Hmx1_MA0896.2 9 bp overlap
Hmx2 1 dataset
Motif DE_48h DE_48h-Hmx2_MA0897.2 15 bp overlap
Hmx3 1 dataset
Motif DE_48h DE_48h-Hmx3_MA0898.2 9 bp overlap
JUN 1 dataset
ChIP DE_D2 S02-DE-d2-JUN-exp1 419 bp overlap
JUN::JUNB 3 datasets
Motif DE_36h DE_36h-JUNJUNB_MA1133.2 11 bp overlap
Motif DE_48h DE_48h-JUNJUNB_MA1133.2 11 bp overlap
Motif DE_60h DE_60h-JUNJUNB_MA1133.2 11 bp overlap
JUNB 3 datasets
Motif DE_36h DE_36h-JUNB_MA1140.3 11 bp overlap
Motif DE_48h DE_48h-JUNB_MA1140.3 11 bp overlap
Motif DE_60h DE_60h-JUNB_MA1140.3 11 bp overlap
LBX2 1 dataset
Motif DE_48h DE_48h-LBX2_MA0699.2 6 bp overlap
LHX2 1 dataset
Motif DE_48h DE_48h-LHX2_MA0700.3 6 bp overlap
MAFK 1 dataset
ChIP HepG2 ENCFF743ZOF 72 bp overlap
MED1 1 dataset
ChIP RH4 GSE83726.MED1.RH4 280 bp overlap
MEIS1 4 datasets
Motif DE_36h DE_36h-MEIS1_MA0498.3 5 bp overlap
Motif DE_48h DE_48h-MEIS1_MA0498.3 5 bp overlap
Motif DE_48h DE_48h-MEIS1_MA1639.2 9 bp overlap
Motif DE_60h DE_60h-MEIS1_MA0498.3 5 bp overlap
MSC 1 dataset
Motif DE_48h DE_48h-MSC_MA0665.1 10 bp overlap
MSX1 1 dataset
Motif DE_48h DE_48h-MSX1_MA0666.3 6 bp overlap
MSX2 1 dataset
Motif DE_48h DE_48h-MSX2_MA0708.3 6 bp overlap
MYCN 1 dataset
ChIP RH4 GSE83726.MYCN.RH4 209 bp overlap
Msx3 1 dataset
Motif DE_48h DE_48h-Msx3_MA0709.2 6 bp overlap
Nobox 1 dataset
Motif DE_48h DE_48h-Nobox_MA0125.2 6 bp overlap
PDX1 1 dataset
ChIP hiPSC GSE125768.PDX1.hiPSC 252 bp overlap
POU4F2 1 dataset
ChIP HNPC_DIF GSE74814.POU4F2.HNPC_DIF 195 bp overlap
POU6F1 3 datasets
Motif DE_36h DE_36h-POU6F1_MA1549.2 7 bp overlap
Motif DE_48h DE_48h-POU6F1_MA1549.2 7 bp overlap
Motif DE_60h DE_60h-POU6F1_MA1549.2 7 bp overlap
RARA 2 datasets
ChIP hiPSC_D3 GSE109172.RARA.hiPSC_D3 244 bp overlap
ChIP hiPSC_D4 GSE109172.RARA.hiPSC_D4 266 bp overlap
RAX 1 dataset
Motif DE_48h DE_48h-RAX_MA0718.2 6 bp overlap
RBPJ 3 datasets
Motif DE_36h DE_36h-RBPJ_MA1116.2 6 bp overlap
Motif DE_48h DE_48h-RBPJ_MA1116.2 6 bp overlap
Motif DE_60h DE_60h-RBPJ_MA1116.2 6 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 560 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 450 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 291 bp overlap
SMAD2_3 3 datasets
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 380 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 618 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 586 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 472 bp overlap
SOX8 1 dataset
ChIP RH4_DMSO-6H GSE116344.SOX8.RH4_DMSO-6H 306 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 181 bp overlap
TP53 2 datasets
Motif DE_48h DE_48h-TP53_MA0106.3 18 bp overlap
Motif DE_60h DE_60h-TP53_MA0106.3 18 bp overlap
Tcf21 1 dataset
Motif DE_48h DE_48h-Tcf21_MA0832.2 10 bp overlap
VENTX 1 dataset
Motif DE_48h DE_48h-VENTX_MA0724.1 9 bp overlap
ZNF24 3 datasets
Motif DE_36h DE_36h-ZNF24_MA1124.1 13 bp overlap
Motif DE_48h DE_48h-ZNF24_MA1124.1 13 bp overlap
Motif DE_60h DE_60h-ZNF24_MA1124.1 13 bp overlap
ZNF558 2 datasets
Motif DE_48h DE_48h-ZNF558_MA2335.1 29 bp overlap
Motif DE_60h DE_60h-ZNF558_MA2335.1 29 bp overlap
ZNF582 1 dataset
Motif DE_48h DE_48h-ZNF582_MA1983.2 19 bp overlap
ZNF652 3 datasets
Motif DE_36h DE_36h-ZNF652_MA1657.2 9 bp overlap
Motif DE_48h DE_48h-ZNF652_MA1657.2 9 bp overlap
Motif DE_60h DE_60h-ZNF652_MA1657.2 9 bp overlap
ZNF677 3 datasets
Motif DE_36h DE_36h-ZNF677_MA2101.1 12 bp overlap
Motif DE_48h DE_48h-ZNF677_MA2101.1 12 bp overlap
Motif DE_60h DE_60h-ZNF677_MA2101.1 12 bp overlap
Zfp809 3 datasets
Motif DE_36h DE_36h-Zfp809_MA2125.1 9 bp overlap
Motif DE_48h DE_48h-Zfp809_MA2125.1 9 bp overlap
Motif DE_60h DE_60h-Zfp809_MA2125.1 9 bp overlap
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