chr2 : 232,268,688 – 232,269,176

488 bp 66 TFs 0 linked genes

This 488 bp open chromatin element has no linked target genes and is bound by 66 transcription factors.

Linked Genes

No linked genes

Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

66 transcription factors

BARX1 1 dataset

Motif DE_36h DE_36h-BARX1_MA0875.2 6 bp overlap

BATF 1 dataset

ChIP GM12878 ENCFF954REE 231 bp overlap

BCL11A 1 dataset

ChIP GM12878 ENCSR000BHA.BCL11A.GM12878 197 bp overlap

BSX 1 dataset

Motif DE_36h DE_36h-BSX_MA0876.2 6 bp overlap

Cebpa 1 dataset

ChIP BLaER1 ENCFF031ISE 356 bp overlap

DLX1 1 dataset

Motif DE_36h DE_36h-DLX1_MA0879.3 6 bp overlap

DLX6 1 dataset

Motif DE_36h DE_36h-DLX6_MA0882.2 6 bp overlap

Dlx2 1 dataset

Motif DE_36h DE_36h-Dlx2_MA0885.3 8 bp overlap

Dlx3 1 dataset

Motif DE_36h DE_36h-Dlx3_MA0880.2 6 bp overlap

Dlx4 1 dataset

Motif DE_36h DE_36h-Dlx4_MA0881.2 6 bp overlap

Dlx5 1 dataset

Motif DE_36h DE_36h-Dlx5_MA1476.3 8 bp overlap

EOMES 1 dataset

ChIP hESC GSE26097.EOMES.hESC 269 bp overlap

FEZF2 1 dataset

Motif DE_36h DE_36h-FEZF2_MA2341.1 8 bp overlap

FOXA2 1 dataset

ChIP BJ1-hTERT_CDT1 GSE92491.FOXA2.BJ1-hTERT_CDT1 60 bp overlap

GATA6 6 datasets

ChIP DE_D1 S09-DE-d1-GATA6-exp1 460 bp overlap

ChIP DE_D1 S14-DE-d1-GATA6-exp1 488 bp overlap

ChIP DE_D1 S41-DE-d1-GATA6-exp2 488 bp overlap

ChIP DE_D2 S55-DE-d2-GATA6-exp2 299 bp overlap

ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 488 bp overlap

ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 488 bp overlap

GBX2 1 dataset

Motif DE_36h DE_36h-GBX2_MA0890.2 6 bp overlap

HESX1 1 dataset

Motif DE_36h DE_36h-HESX1_MA0894.2 6 bp overlap

HNF1A 1 dataset

Motif DE_36h DE_36h-HNF1A_MA0046.3 13 bp overlap

HNF1B 1 dataset

Motif DE_36h DE_36h-HNF1B_MA0153.2 13 bp overlap

HOXA6 1 dataset

Motif DE_36h DE_36h-HOXA6_MA1497.2 7 bp overlap

HOXA7 1 dataset

Motif DE_36h DE_36h-HOXA7_MA1498.3 6 bp overlap

HOXB6 1 dataset

Motif DE_36h DE_36h-HOXB6_MA1500.2 7 bp overlap

HOXB7 1 dataset

Motif DE_36h DE_36h-HOXB7_MA1501.2 7 bp overlap

HOXB8 1 dataset

Motif DE_36h DE_36h-HOXB8_MA1502.2 7 bp overlap

HOXD3 1 dataset

Motif DE_36h DE_36h-HOXD3_MA0912.2 8 bp overlap

HOXD8 1 dataset

Motif DE_36h DE_36h-HOXD8_MA0910.3 7 bp overlap

Hnf1A 1 dataset

Motif DE_36h DE_36h-Hnf1A_MA1991.2 10 bp overlap

IRF4 2 datasets

ChIP GM12878 ENCSR000BGY.IRF4.GM12878 191 bp overlap

ChIP OCI-Ly3 GSE142493.IRF4.OCI-Ly3 287 bp overlap

JUN 3 datasets

ChIP DE_D1 S08-DE-d1-JUN-exp1 289 bp overlap

ChIP DE_D1 S40-DE-d1-JUN-exp2 453 bp overlap

ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 470 bp overlap

LBX2 1 dataset

Motif DE_36h DE_36h-LBX2_MA0699.2 6 bp overlap

LHX2 1 dataset

Motif DE_36h DE_36h-LHX2_MA0700.3 6 bp overlap

Lef1 1 dataset

Motif DE_36h DE_36h-Lef1_MA0768.3 8 bp overlap

MAFK 1 dataset

ChIP HepG2 ENCFF743ZOF 241 bp overlap

MSX1 1 dataset

Motif DE_36h DE_36h-MSX1_MA0666.3 6 bp overlap

MSX2 1 dataset

Motif DE_36h DE_36h-MSX2_MA0708.3 6 bp overlap

MTA2 1 dataset

ChIP GM12878 ENCSR293QAR.MTA2.GM12878 268 bp overlap

Msx3 1 dataset

Motif DE_36h DE_36h-Msx3_MA0709.2 6 bp overlap

NANOG 1 dataset

ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 289 bp overlap

NFIC::TLX1 1 dataset

Motif DE_36h DE_36h-NFICTLX1_MA0119.1 14 bp overlap

Nobox 1 dataset

Motif DE_36h DE_36h-Nobox_MA0125.2 6 bp overlap

PAX5 3 datasets

ChIP GM12878 ENCFF482PUW 251 bp overlap

ChIP GM12878 ENCSR000BHD.PAX5.GM12878 211 bp overlap

ChIP GM12878 ENCSR000BHJ.PAX5.GM12878 185 bp overlap

PHOX2A 1 dataset

Motif DE_36h DE_36h-PHOX2A_MA0713.1 11 bp overlap

POU1F1 1 dataset

Motif DE_36h DE_36h-POU1F1_MA0784.3 14 bp overlap

POU2F2 1 dataset

Motif DE_36h DE_36h-POU2F2_MA0507.3 13 bp overlap

POU3F2 1 dataset

Motif DE_36h DE_36h-POU3F2_MA0787.1 12 bp overlap

POU3F3 1 dataset

Motif DE_36h DE_36h-POU3F3_MA0788.1 13 bp overlap

POU4F1 1 dataset

Motif DE_36h DE_36h-POU4F1_MA0790.2 12 bp overlap

POU4F3 1 dataset

Motif DE_36h DE_36h-POU4F3_MA0791.2 12 bp overlap

POU5F1 1 dataset

ChIP DE_D1 DED1-OCT4_Batch_II 319 bp overlap

Prdm5 1 dataset

Motif DE_36h DE_36h-Prdm5_MA1999.2 11 bp overlap

RAX 1 dataset

Motif DE_36h DE_36h-RAX_MA0718.2 6 bp overlap

RORB 1 dataset

Motif DE_36h DE_36h-RORB_MA1150.2 10 bp overlap

SMAD2-3 2 datasets

ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 441 bp overlap

ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 398 bp overlap

SMAD2_3 5 datasets

ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 331 bp overlap

ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 353 bp overlap

ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 342 bp overlap

ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 326 bp overlap

ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 260 bp overlap

SPI1 5 datasets

ChIP DC_96h_donorM GSE128834.SPI1.DC_96h_donorM 214 bp overlap

ChIP DC_LPS GSE123347.SPI1.DC_LPS 241 bp overlap

ChIP GM12878 ENCFF134LCP 297 bp overlap

ChIP GM12891 ENCFF563IUT 241 bp overlap

ChIP GM12891 ENCSR000BIJ.SPI1.GM12891 186 bp overlap

SPIB 1 dataset

ChIP OCI-Ly3_SHCTR GSE56857.SPIB.OCI-Ly3_SHCTR 293 bp overlap

STAT3 1 dataset

ChIP OCI-Ly3 GSE50723.STAT3.OCI-Ly3 164 bp overlap

T 1 dataset

ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 220 bp overlap

TCF12 1 dataset

ChIP Hep-G2 ENCSR000BJG.TCF12.Hep-G2 127 bp overlap

TCF7 1 dataset

Motif DE_36h DE_36h-TCF7_MA0769.3 7 bp overlap

TEAD4 1 dataset

ChIP hMSC-TERT4 GSE140782.TEAD4.hMSC-TERT4 180 bp overlap

ZFP42 1 dataset

Motif DE_36h DE_36h-ZFP42_MA1651.2 13 bp overlap

ZNF213 1 dataset

Motif DE_36h DE_36h-ZNF213_MA2121.1 12 bp overlap

ZNF217 1 dataset

ChIP GM12878 ENCSR764CZW.ZNF217.GM12878 239 bp overlap

ZNF354A 1 dataset

Motif DE_36h DE_36h-ZNF354A_MA1978.2 20 bp overlap

ZNF652 1 dataset

Motif DE_36h DE_36h-ZNF652_MA1657.2 9 bp overlap