chr2 : 229,578,163 229,578,724
561 bp 51 TFs 1 linked gene
This 561 bp open chromatin element is linked to DNER and is bound by 51 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
DNER 8.5 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr2:229,573,163 – 229,583,724
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
51 transcription factors
Source
Cell type
BRD4 1 dataset
ChIP IMR-90_QUIES GSE74238.BRD4.IMR-90_QUIES 55 bp overlap
CREB1 1 dataset
ChIP A-549 ENCSR000BRB.CREB1.A-549 126 bp overlap
CTCF 92 datasets
ChIP A-549 ENCSR000AUF.CTCF.A-549 261 bp overlap
ChIP A-549 ENCSR000AUE.CTCF.A-549 233 bp overlap
ChIP A-549 ENCSR000DPF.CTCF.A-549 189 bp overlap
ChIP A-549 ENCSR000DNA.CTCF.A-549 154 bp overlap
ChIP A-673 ENCSR611JJS.CTCF.A-673 238 bp overlap
ChIP A549 ENCFF034FVO 271 bp overlap
ChIP A673 ENCFF123WOM 326 bp overlap
ChIP A673 ENCFF123WOM 116 bp overlap
ChIP D54 ENCSR000DKN.CTCF.D54 126 bp overlap
ChIP DND41 ENCSR000AQU.CTCF.DND41 124 bp overlap
ChIP GM23338 ENCFF531QOI 208 bp overlap
ChIP GM23338 ENCFF772DML 153 bp overlap
ChIP GP5D GSE51234.CTCF.GP5D 326 bp overlap
ChIP H1 ENCFF414GZI 161 bp overlap
ChIP H1 ENCFF764RHO 218 bp overlap
ChIP H9 ENCFF152GTF 224 bp overlap
ChIP HAP1_2kb GSE152721.CTCF.HAP1_2kb 118 bp overlap
ChIP HAP1_clone21 GSE152721.CTCF.HAP1_clone21 132 bp overlap
ChIP HAP1_clone21_TSS-CRISPR GSE152721.CTCF.HAP1_clone21_TSS-CRISPR 92 bp overlap
ChIP HAP1_clone25 GSE152721.CTCF.HAP1_clone25 88 bp overlap
ChIP HCT-116 ENCSR240PRQ.CTCF.HCT-116 209 bp overlap
ChIP HCT-116 ENCSR000BSE.CTCF.HCT-116 161 bp overlap
ChIP HCT-116 ENCSR000DTO.CTCF.HCT-116 126 bp overlap
ChIP HCT116 ENCFF209YMI 190 bp overlap
ChIP HL-60 GSE131577.CTCF.HL-60 113 bp overlap
ChIP HT-1080_CBL0137-6h GSE122462.CTCF.HT-1080_CBL0137-6h 113 bp overlap
ChIP HUES-64 GSE97394.CTCF.HUES-64 169 bp overlap
ChIP HUES-64_DNMT-KO GSE97394.CTCF.HUES-64_DNMT-KO 216 bp overlap
ChIP Hep-G2 ENCSR000DLS.CTCF.Hep-G2 99 bp overlap
ChIP K-562_MonoC GSE137216.CTCF.K-562_MonoC 244 bp overlap
ChIP KARPAS422 ENCSR113REG.CTCF.KARPAS422 182 bp overlap
ChIP Loucy ENCSR464DKE.CTCF.Loucy 236 bp overlap
ChIP MCF-10A GSE98551.CTCF.MCF-10A 99 bp overlap
ChIP MCF-7 ENCSR560BUE.CTCF.MCF-7 127 bp overlap
ChIP MDA-MB-435_Asynchronous GSE102019.CTCF.MDA-MB-435_Asynchronous 132 bp overlap
ChIP NB4 ENCSR000DWN.CTCF.NB4 115 bp overlap
ChIP NCI-H929 ENCSR634OAQ.CTCF.NCI-H929 252 bp overlap
ChIP OCI-LY3 ENCFF939BYJ 147 bp overlap
ChIP OCI-LY7 ENCFF086AXQ 409 bp overlap
ChIP OCI-LY7 ENCFF086AXQ 204 bp overlap
ChIP OCI-Ly3 ENCSR756ZKG.CTCF.OCI-Ly3 230 bp overlap
ChIP PC-3 ENCSR359LOD.CTCF.PC-3 257 bp overlap
ChIP Panc1 ENCFF056JQX 106 bp overlap
ChIP RH4 GSE83726.CTCF.RH4 179 bp overlap
ChIP SK-N-AS GSE101295.CTCF.SK-N-AS 123 bp overlap
ChIP SK-N-SH ENCFF575DMG 254 bp overlap
ChIP SU-DHL-6 ENCFF116KKR 393 bp overlap
ChIP SU-DHL-6 ENCFF116KKR 176 bp overlap
ChIP THP-1_Pam3csk-045m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-045m-Flavo-000m 138 bp overlap
ChIP WA01 ENCSR000DLK.CTCF.WA01 137 bp overlap
ChIP WA01 ENCSR000BNH.CTCF.WA01 147 bp overlap
ChIP WA01_NEUR GSE52457.CTCF.WA01_NEUR 191 bp overlap
ChIP anterior-temporal-cortex_fetal GSE116825.CTCF.anterior-temporal-cortex_fetal 213 bp overlap
ChIP ascending-aorta ENCSR846JKO.CTCF.ascending-aorta 226 bp overlap
ChIP cardiac fibroblast ENCFF326EDY 179 bp overlap
ChIP choroid plexus epithelial cell ENCFF407YNR 198 bp overlap
ChIP choroid-plexus_epithelial ENCSR000DTL.CTCF.choroid-plexus_epithelial 173 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF373BUI 259 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF442YDO 246 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF628TCI 286 bp overlap
ChIP endodermal cell ENCFF471YCZ 189 bp overlap
ChIP endothelial_brain-microvascular ENCSR000DTA.CTCF.endothelial_brain-microvascular 121 bp overlap
ChIP epithelial cell of proximal tubule ENCFF763ZKS 223 bp overlap
ChIP epithelial_kidney ENCSR000DVH.CTCF.epithelial_kidney 142 bp overlap
ChIP epithelial_proximal_tubule ENCSR000DXD.CTCF.epithelial_proximal_tubule 145 bp overlap
ChIP fibroblast of pulmonary artery ENCFF742RSV 202 bp overlap
ChIP fibroblast of villous mesenchyme ENCFF345VQO 269 bp overlap
ChIP fibroblast_CARDIAC ENCSR000DTF.CTCF.fibroblast_CARDIAC 130 bp overlap
ChIP fibroblast_FORESKIN ENCSR000DUH.CTCF.fibroblast_FORESKIN 147 bp overlap
ChIP fibroblast_GINGIVA ENCSR000DPS.CTCF.fibroblast_GINGIVA 110 bp overlap
ChIP fibroblast_PULMONARY_ARTERY ENCSR000DUX.CTCF.fibroblast_PULMONARY_ARTERY 149 bp overlap
ChIP fibroblast_VILLOUS_MESENCHYME ENCSR000DVQ.CTCF.fibroblast_VILLOUS_MESENCHYME 165 bp overlap
ChIP foreskin keratinocyte ENCFF980OWR 273 bp overlap
ChIP gastroesophageal-sphincter ENCSR298ZPF.CTCF.gastroesophageal-sphincter 185 bp overlap
ChIP hESC_D0 GSE116862.CTCF.hESC_D0 165 bp overlap
ChIP heart ENCSR232OFD.CTCF.heart 240 bp overlap
ChIP heart_left-ventricle ENCSR544APK.CTCF.heart_left-ventricle 283 bp overlap
ChIP heart_left-ventricle ENCSR718SDR.CTCF.heart_left-ventricle 290 bp overlap
ChIP hiPSC_Angelman GSE117283.CTCF.hiPSC_Angelman 89 bp overlap
ChIP hiPSC_IB12 GSE106870.CTCF.hiPSC_IB12 114 bp overlap
ChIP hiPSC_IB7 GSE106870.CTCF.hiPSC_IB7 139 bp overlap
ChIP hiPSC_IIA11 GSE106870.CTCF.hiPSC_IIA11 125 bp overlap
ChIP hiPSC_IV8 GSE106870.CTCF.hiPSC_IV8 150 bp overlap
ChIP hiPSC_Prader-Willi GSE117283.CTCF.hiPSC_Prader-Willi 180 bp overlap
ChIP hiPSC_failed-genome-editing GSE106870.CTCF.hiPSC_failed-genome-editing 154 bp overlap
ChIP hiPSC_parental-line GSE106870.CTCF.hiPSC_parental-line 158 bp overlap
ChIP mammary epithelial cell ENCFF164SPU 203 bp overlap
ChIP neural progenitor cell ENCFF420RBO 151 bp overlap
ChIP neural progenitor cell ENCFF581WPG 351 bp overlap
ChIP neural_progenitor ENCSR125NBL.CTCF.neural_progenitor 207 bp overlap
ChIP neuron_bipolar_doxy_4d ENCSR619IUE.CTCF.neuron_bipolar_doxy_4d 159 bp overlap
ChIP testis ENCSR753RME.CTCF.testis 190 bp overlap
CTCFL 1 dataset
Motif DE_12h DE_12h-CTCFL_MA1102.3 8 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF335XTP 251 bp overlap
DPRX 1 dataset
Motif DE_12h DE_12h-DPRX_MA1480.2 9 bp overlap
ETV1 2 datasets
Motif DE_12h DE_12h-ETV1_MA0761.3 9 bp overlap
Motif DE_12h DE_12h-ETV1_MA0761.3 9 bp overlap
GATA6 2 datasets
ChIP DE_D1 S09-DE-d1-GATA6-exp1 263 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 279 bp overlap
HDAC3 1 dataset
ChIP RH4_DMSO-6H GSE116344.HDAC3.RH4_DMSO-6H 181 bp overlap
HSF2 1 dataset
Motif DE_12h DE_12h-HSF2_MA0770.1 13 bp overlap
IKZF2 2 datasets
Motif DE_12h DE_12h-IKZF2_MA2326.1 6 bp overlap
Motif DE_12h DE_12h-IKZF2_MA2326.1 6 bp overlap
INSM1 1 dataset
Motif DE_12h DE_12h-INSM1_MA0155.1 12 bp overlap
Ikzf3 2 datasets
Motif DE_12h DE_12h-Ikzf3_MA1992.2 9 bp overlap
Motif DE_12h DE_12h-Ikzf3_MA1992.2 9 bp overlap
KLF1 1 dataset
Motif DE_12h DE_12h-KLF1_MA0493.3 8 bp overlap
KLF10 1 dataset
Motif DE_12h DE_12h-KLF10_MA1511.2 9 bp overlap
KLF14 1 dataset
Motif DE_12h DE_12h-KLF14_MA0740.2 9 bp overlap
KLF16 1 dataset
Motif DE_12h DE_12h-KLF16_MA0741.1 11 bp overlap
KLF2 1 dataset
Motif DE_12h DE_12h-KLF2_MA1515.2 8 bp overlap
KLF4 1 dataset
Motif DE_12h DE_12h-KLF4_MA0039.5 8 bp overlap
KLF5 1 dataset
Motif DE_12h DE_12h-KLF5_MA0599.1 10 bp overlap
MEIS1 1 dataset
Motif DE_12h DE_12h-MEIS1_MA0498.3 5 bp overlap
MEIS2 1 dataset
Motif DE_12h DE_12h-MEIS2_MA0774.1 8 bp overlap
MEIS3 1 dataset
Motif DE_12h DE_12h-MEIS3_MA0775.2 7 bp overlap
MYCN 1 dataset
ChIP COG-N-415 GSE138295.MYCN.COG-N-415 253 bp overlap
PATZ1 1 dataset
Motif DE_12h DE_12h-PATZ1_MA1961.2 11 bp overlap
PRDM1 1 dataset
Motif DE_12h DE_12h-PRDM1_MA0508.4 7 bp overlap
RAD21 14 datasets
ChIP H1 ENCFF698EWO 151 bp overlap
ChIP H1 ENCFF967OJF 201 bp overlap
ChIP HCT-116 ENCSR000BSB.RAD21.HCT-116 122 bp overlap
ChIP HUVEC-C_normoxia GSE94872.RAD21.HUVEC-C_normoxia 190 bp overlap
ChIP MCF-7 ENCSR703TNG.RAD21.MCF-7 147 bp overlap
ChIP THP-1_Pam3csk-000m-Flavo-240m GSE103477.RAD21.THP-1_Pam3csk-000m-Flavo-240m 175 bp overlap
ChIP THP-1_Pam3csk-360m-Flavo-240m GSE103477.RAD21.THP-1_Pam3csk-360m-Flavo-240m 226 bp overlap
ChIP WA09 GSE105028.RAD21.WA09 233 bp overlap
ChIP WA09_heat-shock GSE105028.RAD21.WA09_heat-shock 219 bp overlap
ChIP hiPSC_CVI GSE106870.RAD21.hiPSC_CVI 211 bp overlap
ChIP hiPSC_IB12 GSE106870.RAD21.hiPSC_IB12 143 bp overlap
ChIP hiPSC_IIA12 GSE106870.RAD21.hiPSC_IIA12 154 bp overlap
ChIP hiPSC_IIIB12 GSE106870.RAD21.hiPSC_IIIB12 145 bp overlap
ChIP hiPSC_parental-line GSE106870.RAD21.hiPSC_parental-line 139 bp overlap
RARA 1 dataset
Motif DE_12h DE_12h-RARA_MA0729.1 18 bp overlap
RFX7 1 dataset
Motif DE_12h DE_12h-RFX7_MA1554.2 8 bp overlap
Rarb 1 dataset
Motif DE_12h DE_12h-Rarb_MA0857.1 16 bp overlap
Rarg 1 dataset
Motif DE_12h DE_12h-Rarg_MA0859.2 15 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 446 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 302 bp overlap
SMAD3 1 dataset
ChIP BG03 GSE36578.SMAD3.BG03 102 bp overlap
SOX2 1 dataset
ChIP hiPSC GSE56567.SOX2.hiPSC 326 bp overlap
SP4 1 dataset
Motif DE_12h DE_12h-SP4_MA0685.2 9 bp overlap
SP5 1 dataset
Motif DE_12h DE_12h-SP5_MA1965.2 6 bp overlap
SP8 1 dataset
Motif DE_12h DE_12h-SP8_MA0747.2 11 bp overlap
SREBF1 1 dataset
Motif DE_12h DE_12h-SREBF1_MA0595.1 10 bp overlap
SREBF2 1 dataset
Motif DE_12h DE_12h-SREBF2_MA0596.1 10 bp overlap
TP53 1 dataset
ChIP hESC_DAMAGED GSE39912.TP53.hESC_DAMAGED 218 bp overlap
Wt1 1 dataset
Motif DE_12h DE_12h-Wt1_MA1627.2 10 bp overlap
Yy1 1 dataset
Motif DE_12h DE_12h-Yy1_MA0095.4 8 bp overlap
ZBTB12 1 dataset
Motif DE_12h DE_12h-ZBTB12_MA1649.2 7 bp overlap
ZNF189 1 dataset
Motif DE_12h DE_12h-ZNF189_MA1725.2 9 bp overlap
ZNF263 1 dataset
Motif DE_12h DE_12h-ZNF263_MA0528.3 7 bp overlap
ZNF547 1 dataset
Motif DE_12h DE_12h-ZNF547_MA2334.1 13 bp overlap
ZNF680 1 dataset
Motif DE_12h DE_12h-ZNF680_MA1729.2 11 bp overlap
ZNF736 1 dataset
ChIP HEK293T GSE78099.ZNF736.HEK293T 116 bp overlap
ZNF768 1 dataset
Motif DE_12h DE_12h-ZNF768_MA1731.2 9 bp overlap