chr2 : 225,367,592 – 225,367,814
222 bp 49 TFs 0 linked genes
This 222 bp open chromatin element has no linked target genes and is bound by 49 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr2:225,362,592 – 225,372,814
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
49 transcription factors
Source
Cell type
AHR 1 dataset
ChIP MCF-7_TCDD_45min GSE90550.AHR.MCF-7_TCDD_45min 162 bp overlap
AR 5 datasets
ChIP LNCaP_R1881 GSE69043.AR.LNCaP_R1881 136 bp overlap
ChIP LNCaP_SHGATA2_R1881 GSE69043.AR.LNCaP_SHGATA2_R1881 107 bp overlap
ChIP MCF-7 ERP001226.AR.MCF-7 139 bp overlap
ChIP VCaP GSE148358.AR.VCaP 174 bp overlap
ChIP breast-cancer_ENOB-2854 GSE128018.AR.breast-cancer_ENOB-2854 137 bp overlap
ARID1A 5 datasets
ChIP MCF-7 GSE123284.ARID1A.MCF-7 222 bp overlap
ChIP MCF-7_4-hydroxytamoxifen GSE123284.ARID1A.MCF-7_4-hydroxytamoxifen 222 bp overlap
ChIP MCF-7_DCDT GSE123284.ARID1A.MCF-7_DCDT 222 bp overlap
ChIP MCF-7_Fulvestrant GSE123284.ARID1A.MCF-7_Fulvestrant 222 bp overlap
ChIP MCF-7_JQ1 GSE123284.ARID1A.MCF-7_JQ1 190 bp overlap
CREBBP 1 dataset
ChIP MCF-7 ERP000901.CREBBP.MCF-7 203 bp overlap
DPF2 1 dataset
ChIP MCF-7 ENCSR234VCE.DPF2.MCF-7 212 bp overlap
EHF 1 dataset
Motif DE_12h DE_12h-EHF_MA0598.4 9 bp overlap
ELF1 2 datasets
Motif DE_12h DE_12h-ELF1_MA0473.4 9 bp overlap
ChIP MCF-7 ENCSR000BSS.ELF1.MCF-7 131 bp overlap
ELF3 1 dataset
Motif DE_12h DE_12h-ELF3_MA0640.3 9 bp overlap
ESR1 14 datasets
ChIP MCF-7 GSE41561.ESR1.MCF-7 139 bp overlap
ChIP MCF-7 GSE48930.ESR1.MCF-7 145 bp overlap
ChIP MCF-7_E2+4OHT_SRC-3 GSE119702.ESR1.MCF-7_E2+4OHT_SRC-3 184 bp overlap
ChIP MCF-7_LY2_ETOH GSE54592.ESR1.MCF-7_LY2_ETOH 155 bp overlap
ChIP MCF-7_RAD001 GSE103023.ESR1.MCF-7_RAD001 134 bp overlap
ChIP MCF-7_SRC3_OHT GSE119702.ESR1.MCF-7_SRC3_OHT 184 bp overlap
ChIP MCF-7_estradiol-DHT_4h GSE99626.ESR1.MCF-7_estradiol-DHT_4h 222 bp overlap
ChIP MCF-7_estradiol-Dex_4h GSE99626.ESR1.MCF-7_estradiol-Dex_4h 182 bp overlap
ChIP MCF-7_estradiol_4h GSE99626.ESR1.MCF-7_estradiol_4h 211 bp overlap
ChIP MCF-7_jc5853 GSE126004.ESR1.MCF-7_jc5853 175 bp overlap
ChIP T-47D ENCSR000BKN.ESR1.T-47D 118 bp overlap
ChIP T-47D_Y537S GSE148277.ESR1.T-47D_Y537S 222 bp overlap
ChIP T-47D_Y537S_E2 GSE148277.ESR1.T-47D_Y537S_E2 213 bp overlap
ChIP breast-cancer_S440-2187 GSE128018.ESR1.breast-cancer_S440-2187 202 bp overlap
ESR1_Y537S 1 dataset
ChIP MCF-7_E2 GSE94493.ESR1_Y537S.MCF-7_E2 172 bp overlap
ETV1 1 dataset
Motif DE_12h DE_12h-ETV1_MA0761.3 9 bp overlap
Elf5 1 dataset
Motif DE_12h DE_12h-Elf5_MA0136.4 8 bp overlap
Erg 1 dataset
Motif DE_12h DE_12h-Erg_MA0474.4 10 bp overlap
FOXA1 31 datasets
ChIP MCF-7 GSE81714.FOXA1.MCF-7 169 bp overlap
ChIP MCF-7 GSE72249.FOXA1.MCF-7 222 bp overlap
ChIP MCF-7 ERP001226.FOXA1.MCF-7 169 bp overlap
ChIP MCF-7 ERP000380.FOXA1.MCF-7 160 bp overlap
ChIP MCF-7_4OH-Tam GSE75201.FOXA1.MCF-7_4OH-Tam 103 bp overlap
ChIP MCF-7_DEX GSE72249.FOXA1.MCF-7_DEX 217 bp overlap
ChIP MCF-7_E2 GSE72249.FOXA1.MCF-7_E2 213 bp overlap
ChIP MCF-7_E2_TAM ERP000380.FOXA1.MCF-7_E2_TAM 154 bp overlap
ChIP MCF-7_TAMR_E2_TAM ERP000380.FOXA1.MCF-7_TAMR_E2_TAM 188 bp overlap
ChIP MCF-7_estrogen_ab2 GSE112969.FOXA1.MCF-7_estrogen_ab2 222 bp overlap
ChIP MCF-7_vehicle_ab2 GSE112969.FOXA1.MCF-7_vehicle_ab2 222 bp overlap
ChIP T-47D_8h GSE137579.FOXA1.T-47D_8h 141 bp overlap
ChIP T-47D_CR3flp GSE99479.FOXA1.T-47D_CR3flp 222 bp overlap
ChIP T-47D_E2_TAM ERP000380.FOXA1.T-47D_E2_TAM 195 bp overlap
ChIP T-47D_JC4748 GSE126004.FOXA1.T-47D_JC4748 212 bp overlap
ChIP T-47D_flp-ctrl GSE99479.FOXA1.T-47D_flp-ctrl 155 bp overlap
ChIP T-47D_shRNF2 GSE137579.FOXA1.T-47D_shRNF2 167 bp overlap
ChIP T-47D_shRNF2_24h GSE137579.FOXA1.T-47D_shRNF2_24h 207 bp overlap
ChIP T-47D_shRNF2_8h GSE137579.FOXA1.T-47D_shRNF2_8h 155 bp overlap
ChIP ZR-75-1_estrogen_ab2 GSE112969.FOXA1.ZR-75-1_estrogen_ab2 222 bp overlap
ChIP ZR-75-1_vehicle_ab2 GSE112969.FOXA1.ZR-75-1_vehicle_ab2 222 bp overlap
ChIP ZR751 GSE72249.FOXA1.ZR751 179 bp overlap
ChIP ZR751_DEX GSE72249.FOXA1.ZR751_DEX 181 bp overlap
ChIP ZR751_E2 GSE72249.FOXA1.ZR751_E2 184 bp overlap
ChIP breast-cancer_ENOB-2848 GSE128018.FOXA1.breast-cancer_ENOB-2848 222 bp overlap
ChIP breast-cancer_ENOB-2849 GSE128018.FOXA1.breast-cancer_ENOB-2849 222 bp overlap
ChIP breast-cancer_ENOB-2852 GSE128018.FOXA1.breast-cancer_ENOB-2852 222 bp overlap
ChIP breast-cancer_Veh-2856 GSE128018.FOXA1.breast-cancer_Veh-2856 222 bp overlap
ChIP breast-cancer_Veh-2858 GSE128018.FOXA1.breast-cancer_Veh-2858 222 bp overlap
ChIP breast-cancer_Veh-2860 GSE128018.FOXA1.breast-cancer_Veh-2860 222 bp overlap
ChIP primary-breast-cancer_B2_DSG GSE114737.FOXA1.primary-breast-cancer_B2_DSG 222 bp overlap
GABPA 1 dataset
Motif DE_12h DE_12h-GABPA_MA0062.4 10 bp overlap
GATA2 4 datasets
ChIP LNCaP_CSFCS GSE69043.GATA2.LNCaP_CSFCS 200 bp overlap
ChIP LNCaP_FBS GSE69043.GATA2.LNCaP_FBS 160 bp overlap
ChIP VCaP GSE125236.GATA2.VCaP 159 bp overlap
ChIP hiPSC_SLC6ebs GSE107639.GATA2.hiPSC_SLC6ebs 155 bp overlap
GATA3 10 datasets
ChIP MCF-7 ENCFF352QVM 138 bp overlap
ChIP MCF-7 ENCFF437NQS 157 bp overlap
ChIP MCF-7 GSE51274.GATA3.MCF-7 222 bp overlap
ChIP MCF-7 GSE122847.GATA3.MCF-7 222 bp overlap
ChIP MCF-7 GSE128445.GATA3.MCF-7 193 bp overlap
ChIP MCF-7 ENCSR000EWS.GATA3.MCF-7 180 bp overlap
ChIP MCF-7_DMSO GSE29073.GATA3.MCF-7_DMSO 144 bp overlap
ChIP T-47D GSE51274.GATA3.T-47D 167 bp overlap
ChIP T-47D ENCSR000BMX.GATA3.T-47D 197 bp overlap
ChIP T-47D_sc GSE122847.GATA3.T-47D_sc 222 bp overlap
GATA3_Cter 2 datasets
ChIP T-47D_CR3flp GSE99479.GATA3_Cter.T-47D_CR3flp 172 bp overlap
ChIP T-47D_flp-ctrl GSE99479.GATA3_Cter.T-47D_flp-ctrl 222 bp overlap
GATA3_Nter 2 datasets
ChIP T-47D_CR3flp GSE99479.GATA3_Nter.T-47D_CR3flp 222 bp overlap
ChIP T-47D_flp-ctrl GSE99479.GATA3_Nter.T-47D_flp-ctrl 222 bp overlap
GRHL1 1 dataset
ChIP MCF-7 GSE140185.GRHL1.MCF-7 222 bp overlap
GRHL2 5 datasets
ChIP MCF-7 GSE109820.GRHL2.MCF-7 222 bp overlap
ChIP MCF-7 GSE99680.GRHL2.MCF-7 218 bp overlap
ChIP MCF-7-WS8_VEH GSE113092.GRHL2.MCF-7-WS8_VEH 222 bp overlap
ChIP MCF-7_E2_45min GSE109820.GRHL2.MCF-7_E2_45min 222 bp overlap
ChIP T-47D GSE99680.GRHL2.T-47D 220 bp overlap
HDAC2 1 dataset
ChIP MCF-7 ENCSR000BTP.HDAC2.MCF-7 169 bp overlap
IKZF2 1 dataset
Motif DE_12h DE_12h-IKZF2_MA2326.1 6 bp overlap
Ikzf3 1 dataset
Motif DE_12h DE_12h-Ikzf3_MA1992.2 9 bp overlap
KDM5B 1 dataset
ChIP SUM185_SHCTCF GSE46055.KDM5B.SUM185_SHCTCF 172 bp overlap
NANOG 3 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 222 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 158 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 222 bp overlap
NKX2-1 1 dataset
ChIP NCI-H1819 GSE39998.NKX2-1.NCI-H1819 221 bp overlap
NR2F2 1 dataset
ChIP MCF-7 ENCSR000BUY.NR2F2.MCF-7 210 bp overlap
NR3C1_mut 1 dataset
ChIP MCF-7_ICI_Dex GSE81510.NR3C1_mut.MCF-7_ICI_Dex 119 bp overlap
NRIP1 2 datasets
ChIP MCF-7 ERP005838.NRIP1.MCF-7 197 bp overlap
ChIP MCF-7_E2 ERP005838.NRIP1.MCF-7_E2 204 bp overlap
POLR2A 2 datasets
ChIP GM23338 ENCFF450WCS 222 bp overlap
ChIP H1 ENCFF833NJP 131 bp overlap
POU5F1 1 dataset
ChIP HUES-8 GSE109524.POU5F1.HUES-8 198 bp overlap
PRDM14 2 datasets
ChIP hESC GSE22767.PRDM14.hESC 222 bp overlap
ChIP hESC GSE138674.PRDM14.hESC 222 bp overlap
Prdm14 1 dataset
Motif DE_12h DE_12h-Prdm14_MA1998.2 8 bp overlap
SIN3A 3 datasets
ChIP MCF-7 ENCFF521RDC 222 bp overlap
ChIP MCF-7 ENCFF521RDC 169 bp overlap
ChIP MCF-7 ENCSR000BUM.SIN3A.MCF-7 129 bp overlap
SMARCA4 4 datasets
ChIP MCF-7 GSE123284.SMARCA4.MCF-7 222 bp overlap
ChIP MCF-7 GSE140185.SMARCA4.MCF-7 222 bp overlap
ChIP MCF-7_parental GSE123284.SMARCA4.MCF-7_parental 222 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 136 bp overlap
SMARCB1 5 datasets
ChIP MCF-7 GSE123284.SMARCB1.MCF-7 222 bp overlap
ChIP MCF-7_4-hydroxytamoxifen GSE123284.SMARCB1.MCF-7_4-hydroxytamoxifen 222 bp overlap
ChIP MCF-7_DCDT GSE123284.SMARCB1.MCF-7_DCDT 222 bp overlap
ChIP MCF-7_Fulvestrant GSE123284.SMARCB1.MCF-7_Fulvestrant 222 bp overlap
ChIP MCF-7_estrogen GSE123284.SMARCB1.MCF-7_estrogen 222 bp overlap
SMARCD3 1 dataset
ChIP MCF-7 GSE124225.SMARCD3.MCF-7 197 bp overlap
SOX2 1 dataset
ChIP hiPSC GSE56567.SOX2.hiPSC 222 bp overlap
STAT3 1 dataset
ChIP HCC1187 GSE152203.STAT3.HCC1187 222 bp overlap
TCF12 2 datasets
ChIP H1 ENCFF203EBH 222 bp overlap
ChIP WA01 ENCSR000BIT.TCF12.WA01 134 bp overlap
TCF7L2 5 datasets
ChIP HCT-116 ENCSR000EUV.TCF7L2.HCT-116 214 bp overlap
ChIP HCT116 ENCFF038POZ 202 bp overlap
ChIP MCF-7 ENCFF219LIX 222 bp overlap
ChIP MCF-7 ENCSR000EWT.TCF7L2.MCF-7 169 bp overlap
ChIP MDA-MB-453 GSE45201.TCF7L2.MDA-MB-453 222 bp overlap
TEAD4 3 datasets
ChIP MCF-7_BLRP_WT_Veh GSE125594.TEAD4.MCF-7_BLRP_WT_Veh 163 bp overlap
ChIP PC-9_1DF GSE131687.TEAD4.PC-9_1DF 171 bp overlap
ChIP SNU-216 GSE44416.TEAD4.SNU-216 142 bp overlap
YY1 2 datasets
ChIP NT2-D1 ENCSR000EXG.YY1.NT2-D1 97 bp overlap
ChIP WA01 ENCSR000BKD.YY1.WA01 138 bp overlap
YY1AP1 1 dataset
ChIP PC-9_1DF GSE131687.YY1AP1.PC-9_1DF 222 bp overlap
ZNF143 1 dataset
ChIP MCF-7 GSE76454.ZNF143.MCF-7 144 bp overlap
ZNF175 1 dataset
Motif DE_12h DE_12h-ZNF175_MA2332.1 9 bp overlap
ZNF692 1 dataset
Motif DE_12h DE_12h-ZNF692_MA1986.2 8 bp overlap
ZSCAN4 1 dataset
Motif DE_12h DE_12h-ZSCAN4_MA1155.1 15 bp overlap
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