chr2 : 64,460,283 64,460,894
611 bp 57 TFs 2 linked genes
This 611 bp open chromatin element is linked to LGALSL and LGALSL-DT and is bound by 57 transcription factors.
Linked Genes
2 genes
Gene Expression Dist. to TSS Distance Link type
LGALSL 5.8 kb Proximal Proximity
LGALSL-DT 6.3 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr2:64,455,283 – 64,465,894
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
57 transcription factors
Source
Cell type
BARX2 1 dataset
Motif DE_36h DE_36h-BARX2_MA1471.2 9 bp overlap
CBX8 1 dataset
ChIP K-562 ENCSR000ATW.CBX8.K-562 521 bp overlap
CRX 3 datasets
ChIP retina_Hu20 GSE137311.CRX.retina_Hu20 260 bp overlap
ChIP retina_Hu3 GSE137311.CRX.retina_Hu3 356 bp overlap
ChIP retina_Hu6 GSE137311.CRX.retina_Hu6 423 bp overlap
CTCF 1 dataset
ChIP retina_Hu25 GSE137311.CTCF.retina_Hu25 257 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF680YXW 200 bp overlap
Dmrt1 1 dataset
Motif DE_36h DE_36h-Dmrt1_MA1603.2 9 bp overlap
E2F6 1 dataset
Motif DE_36h DE_36h-E2F6_MA0471.3 8 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 394 bp overlap
ETS1 1 dataset
ChIP cardiomyocyte_D2 GSE129986.ETS1.cardiomyocyte_D2 245 bp overlap
EZH2 1 dataset
ChIP DND41 ENCSR000ASW.EZH2.DND41 522 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 569 bp overlap
ChIP DE DE-FOXA2-2 571 bp overlap
Foxq1 1 dataset
Motif DE_36h DE_36h-Foxq1_MA0040.2 10 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 524 bp overlap
ChIP DE DE-GATA4-2 611 bp overlap
GATA6 9 datasets
ChIP DE DE-GATA6-1 493 bp overlap
ChIP DE DE-GATA6-2 611 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 611 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 570 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 556 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 600 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 589 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 611 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 474 bp overlap
GFI1 1 dataset
Motif DE_36h DE_36h-GFI1_MA0038.3 11 bp overlap
HDAC2 1 dataset
ChIP RH4_Entinostat-6H GSE116344.HDAC2.RH4_Entinostat-6H 204 bp overlap
HOXB4 1 dataset
Motif DE_36h DE_36h-HOXB4_MA1499.2 6 bp overlap
HOXC4 1 dataset
Motif DE_36h DE_36h-HOXC4_MA1504.2 6 bp overlap
HOXD3 1 dataset
Motif DE_36h DE_36h-HOXD3_MA0912.2 8 bp overlap
HOXD4 1 dataset
Motif DE_36h DE_36h-HOXD4_MA1507.2 6 bp overlap
KLF1 1 dataset
ChIP HEK293 ENCSR859BMR.KLF1.HEK293 249 bp overlap
MAFG::NFE2L1 2 datasets
Motif DE_36h DE_36h-MAFGNFE2L1_MA0089.3 11 bp overlap
Motif DE_36h DE_36h-MAFGNFE2L1_MA0089.3 11 bp overlap
MEF2D 2 datasets
ChIP retina_Hu13 GSE137311.MEF2D.retina_Hu13 245 bp overlap
ChIP retina_Hu25 GSE137311.MEF2D.retina_Hu25 285 bp overlap
MEIS1 2 datasets
Motif DE_36h DE_36h-MEIS1_MA0498.3 5 bp overlap
Motif DE_36h DE_36h-MEIS1_MA1639.2 9 bp overlap
MEIS2 1 dataset
Motif DE_36h DE_36h-MEIS2_MA1640.2 9 bp overlap
MYBL1 1 dataset
Motif DE_36h DE_36h-MYBL1_MA0776.1 12 bp overlap
NEUROD1 1 dataset
ChIP D283-Med_shNEUROD1-1579 GSE92582.NEUROD1.D283-Med_shNEUROD1-1579 251 bp overlap
NFYA 1 dataset
Motif DE_36h DE_36h-NFYA_MA0060.4 8 bp overlap
NFYC 1 dataset
Motif DE_36h DE_36h-NFYC_MA1644.2 7 bp overlap
NRL 1 dataset
ChIP retina_Hu13 GSE137311.NRL.retina_Hu13 345 bp overlap
Nfe2l2 1 dataset
Motif DE_36h DE_36h-Nfe2l2_MA0150.3 11 bp overlap
OTX2 1 dataset
ChIP retina_Hu7 GSE137311.OTX2.retina_Hu7 402 bp overlap
PAX3 1 dataset
Motif DE_36h DE_36h-PAX3_MA1546.2 14 bp overlap
PAX7 1 dataset
ChIP H9_DOX GSE98976.PAX7.H9_DOX 181 bp overlap
PBX2 1 dataset
Motif DE_36h DE_36h-PBX2_MA1113.3 9 bp overlap
POU4F1 1 dataset
Motif DE_36h DE_36h-POU4F1_MA0790.2 12 bp overlap
POU4F2 1 dataset
Motif DE_36h DE_36h-POU4F2_MA0683.2 15 bp overlap
POU4F3 1 dataset
Motif DE_36h DE_36h-POU4F3_MA0791.2 12 bp overlap
POU5F1 1 dataset
ChIP BJ_INDUCED GSE36570.POU5F1.BJ_INDUCED 157 bp overlap
POU6F1 1 dataset
Motif DE_36h DE_36h-POU6F1_MA1549.2 7 bp overlap
POU6F2 1 dataset
Motif DE_36h DE_36h-POU6F2_MA0793.2 9 bp overlap
RBPJ 1 dataset
Motif DE_36h DE_36h-RBPJ_MA1116.2 6 bp overlap
RORB 1 dataset
ChIP retina_Hu22 GSE137311.RORB.retina_Hu22 325 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 296 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 292 bp overlap
SMAD2_3 2 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 302 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 270 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 270 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 401 bp overlap
Stat6 1 dataset
Motif DE_36h DE_36h-Stat6_MA0520.2 10 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 339 bp overlap
Tbx6 2 datasets
Motif DE_36h DE_36h-Tbx6_MA1567.3 9 bp overlap
Motif DE_36h DE_36h-Tbx6_MA1567.3 9 bp overlap
ZNF317 1 dataset
Motif DE_36h DE_36h-ZNF317_MA1593.2 8 bp overlap
ZNF652 1 dataset
Motif DE_36h DE_36h-ZNF652_MA1657.2 9 bp overlap
ZNF75A 1 dataset
Motif DE_36h DE_36h-ZNF75A_MA2097.1 12 bp overlap