chr1 : 32,439,697 – 32,440,223
526 bp 40 TFs 12 linked genes
This 526 bp open chromatin element is linked to 12 target genes and is bound by 40 transcription factors.
Linked Genes
12 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
ZBTB8B 25.2 kb Distal Multiome
BSDC1 45.5 kb Distal Multiome
ZBTB8A 99.5 kb Distal Multiome
MARCKSL1 103.7 kb Distal Multiome
HDAC1 147.8 kb Distal Multiome
ZBTB8OS 210.6 kb Distal Multiome
RBBP4 211.3 kb Distal Multiome
EIF3I 217.5 kb Distal Multiome
TMEM234 217.6 kb Distal Multiome
CCDC28B 239.3 kb Distal Multiome
TXLNA 259.8 kb Distal Multiome
SYNC 262.9 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:32,434,697 – 32,445,223
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
40 transcription factors
Source
Cell type
Atoh1 2 datasets
Motif DE_24h DE_24h-Atoh1_MA1467.3 7 bp overlap
Motif DE_48h DE_48h-Atoh1_MA1467.3 7 bp overlap
CTCF 2 datasets
Motif DE_24h DE_24h-CTCF_MA1930.2 33 bp overlap
Motif DE_48h DE_48h-CTCF_MA1930.2 33 bp overlap
ETV5::FIGLA 1 dataset
Motif DE_48h DE_48h-ETV5FIGLA_MA1945.2 14 bp overlap
FIGLA 2 datasets
Motif DE_24h DE_24h-FIGLA_MA0820.2 6 bp overlap
Motif DE_48h DE_48h-FIGLA_MA0820.2 6 bp overlap
FOXA2 1 dataset
ChIP DE DE-FOXA2-2 276 bp overlap
GATA6 7 datasets
ChIP DE DE-GATA6-2 330 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 363 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 526 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 490 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 350 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 526 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 495 bp overlap
HAND2 2 datasets
Motif DE_24h DE_24h-HAND2_MA1638.2 6 bp overlap
Motif DE_48h DE_48h-HAND2_MA1638.2 6 bp overlap
JUN 1 dataset
ChIP DE_D1 S08-DE-d1-JUN-exp1 272 bp overlap
KLF1 1 dataset
Motif DE_48h DE_48h-KLF1_MA0493.3 8 bp overlap
KLF10 1 dataset
Motif DE_48h DE_48h-KLF10_MA1511.2 9 bp overlap
KLF11 1 dataset
Motif DE_48h DE_48h-KLF11_MA1512.2 10 bp overlap
KLF16 1 dataset
Motif DE_48h DE_48h-KLF16_MA0741.1 11 bp overlap
KLF2 1 dataset
Motif DE_48h DE_48h-KLF2_MA1515.2 8 bp overlap
KLF4 1 dataset
Motif DE_48h DE_48h-KLF4_MA0039.5 8 bp overlap
KLF5 1 dataset
Motif DE_48h DE_48h-KLF5_MA0599.1 10 bp overlap
KLF6 1 dataset
Motif DE_48h DE_48h-KLF6_MA1517.2 9 bp overlap
KLF9 1 dataset
Motif DE_48h DE_48h-KLF9_MA1107.3 11 bp overlap
NEUROD1 2 datasets
Motif DE_24h DE_24h-NEUROD1_MA1109.2 8 bp overlap
Motif DE_48h DE_48h-NEUROD1_MA1109.2 8 bp overlap
NEUROG2 2 datasets
Motif DE_24h DE_24h-NEUROG2_MA1642.2 7 bp overlap
Motif DE_48h DE_48h-NEUROG2_MA1642.2 7 bp overlap
NFIA 1 dataset
Motif DE_48h DE_48h-NFIA_MA0670.2 6 bp overlap
NFIX 1 dataset
Motif DE_48h DE_48h-NFIX_MA0671.2 6 bp overlap
NRL 2 datasets
Motif DE_24h DE_24h-NRL_MA0842.3 12 bp overlap
Motif DE_48h DE_48h-NRL_MA0842.3 12 bp overlap
Neurod2 2 datasets
Motif DE_24h DE_24h-Neurod2_MA0668.3 8 bp overlap
Motif DE_48h DE_48h-Neurod2_MA0668.3 8 bp overlap
OSR2 1 dataset
Motif DE_48h DE_48h-OSR2_MA1646.2 8 bp overlap
POU5F1 1 dataset
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 153 bp overlap
RBPJ 1 dataset
Motif DE_48h DE_48h-RBPJ_MA1116.2 6 bp overlap
SETDB1 2 datasets
ChIP HEK293 ENCSR348AGV.SETDB1.HEK293 187 bp overlap
ChIP U2OS ENCSR000EYD.SETDB1.U2OS 187 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 489 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 526 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 526 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 468 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 526 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 520 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 526 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 503 bp overlap
SMARCC1 2 datasets
ChIP DE_D1 S15-DE-d1-BAF155-exp1 64 bp overlap
ChIP DE_D1 S15-DE-d1-BAF155-exp1 196 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 280 bp overlap
SREBF1 2 datasets
Motif DE_24h DE_24h-SREBF1_MA0829.3 10 bp overlap
Motif DE_48h DE_48h-SREBF1_MA0829.3 10 bp overlap
Stat5b 1 dataset
Motif DE_48h DE_48h-Stat5b_MA1625.2 9 bp overlap
TRIM28 1 dataset
ChIP WIBR3_NAIVE GSE84382.TRIM28.WIBR3_NAIVE 150 bp overlap
ZEB1 2 datasets
Motif DE_24h DE_24h-ZEB1_MA0103.4 6 bp overlap
Motif DE_48h DE_48h-ZEB1_MA0103.4 6 bp overlap
ZNF282 1 dataset
Motif DE_48h DE_48h-ZNF282_MA1154.2 15 bp overlap
ZNF317 2 datasets
Motif DE_24h DE_24h-ZNF317_MA1593.2 8 bp overlap
Motif DE_48h DE_48h-ZNF317_MA1593.2 8 bp overlap
ZNF44 1 dataset
ChIP HepG2 ENCFF984YCN 149 bp overlap
ZNF75A 1 dataset
Motif DE_48h DE_48h-ZNF75A_MA2097.1 12 bp overlap
ZNF75D 1 dataset
Motif DE_48h DE_48h-ZNF75D_MA1601.2 12 bp overlap
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