chr2 : 51,028,353 51,028,982
629 bp 43 TFs 2 linked genes
This 629 bp open chromatin element is linked to NRXN1 and NRXN1-DT and is bound by 43 transcription factors.
Linked Genes
2 genes
Gene Expression Dist. to TSS Distance Link type
NRXN1 3.1 kb Proximal Proximity
NRXN1-DT 3.6 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr2:51,023,353 – 51,033,982
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
43 transcription factors
Source
Cell type
BRD2 1 dataset
ChIP THP-1_iBET GSE138084.BRD2.THP-1_iBET 202 bp overlap
BRD4 10 datasets
ChIP MV4-11-B_BI00894999_100nM_4h GSE101821.BRD4.MV4-11-B_BI00894999_100nM_4h 245 bp overlap
ChIP MV4-11-B_BI00894999_35nM_4h GSE101821.BRD4.MV4-11-B_BI00894999_35nM_4h 161 bp overlap
ChIP MV4-11-B_DMSO GSE101821.BRD4.MV4-11-B_DMSO 124 bp overlap
ChIP MV4-11_DMSO GSE71776.BRD4.MV4-11_DMSO 105 bp overlap
ChIP MV4-11_IBET GSE71776.BRD4.MV4-11_IBET 157 bp overlap
ChIP MV4-11_IBET_SGC GSE71776.BRD4.MV4-11_IBET_SGC 110 bp overlap
ChIP MV4-11_SGC GSE71776.BRD4.MV4-11_SGC 219 bp overlap
ChIP THP-1_DMSO GSE138084.BRD4.THP-1_DMSO 136 bp overlap
ChIP THP-1_iBET GSE138084.BRD4.THP-1_iBET 121 bp overlap
ChIP THP-1_iBET-BD2 GSE138084.BRD4.THP-1_iBET-BD2 161 bp overlap
CEBPA 15 datasets
ChIP Kasumi-1_CEBPA-ER GSE102697.CEBPA.Kasumi-1_CEBPA-ER 81 bp overlap
ChIP Kasumi-1_CEBPA-ER_E2 GSE102697.CEBPA.Kasumi-1_CEBPA-ER_E2 104 bp overlap
ChIP MV4-11 GSE88746.CEBPA.MV4-11 237 bp overlap
ChIP SKH1_CEBPA-ER GSE102697.CEBPA.SKH1_CEBPA-ER 58 bp overlap
ChIP SKH1_RUNX1-EVI1_KD GSE87283.CEBPA.SKH1_RUNX1-EVI1_KD 90 bp overlap
ChIP T-47D_progesterone GSE132649.CEBPA.T-47D_progesterone 141 bp overlap
ChIP T-47D_siCtrl GSE132649.CEBPA.T-47D_siCtrl 79 bp overlap
ChIP THP-1_1-25D_24h GSE124032.CEBPA.THP-1_1-25D_24h 188 bp overlap
ChIP THP-1_1-25D_2h GSE124032.CEBPA.THP-1_1-25D_2h 220 bp overlap
ChIP THP-1_1-25D_8h GSE124032.CEBPA.THP-1_1-25D_8h 209 bp overlap
ChIP THP-1_EtOH_24h GSE124032.CEBPA.THP-1_EtOH_24h 176 bp overlap
ChIP THP-1_EtOH_2h GSE124032.CEBPA.THP-1_EtOH_2h 197 bp overlap
ChIP THP-1_EtOH_8h GSE124032.CEBPA.THP-1_EtOH_8h 144 bp overlap
ChIP U-937 ERP008568.CEBPA.U-937 111 bp overlap
ChIP liver ERP002306.CEBPA.liver 56 bp overlap
CEBPB 18 datasets
ChIP A-549 ENCSR000BUB.CEBPB.A-549 79 bp overlap
ChIP A549 ENCFF235AIY 56 bp overlap
ChIP A549 ENCFF781RLJ 91 bp overlap
ChIP A549 ENCFF797MXZ 133 bp overlap
ChIP HFOB_DIFF GSE82295.CEBPB.HFOB_DIFF 166 bp overlap
ChIP HeLa-S3 ENCFF722WEG 72 bp overlap
ChIP MCF-7 ENCFF772ZTQ 77 bp overlap
ChIP MV4-11 GSE88746.CEBPB.MV4-11 192 bp overlap
ChIP THP-1_NS1-Pam3csk-0h GSE103477.CEBPB.THP-1_NS1-Pam3csk-0h 226 bp overlap
ChIP THP-1_NS1-Pam3csk-4h GSE103477.CEBPB.THP-1_NS1-Pam3csk-4h 91 bp overlap
ChIP THP-1_eGFP-Pam3csk-0h GSE103477.CEBPB.THP-1_eGFP-Pam3csk-0h 173 bp overlap
ChIP THP-1_eGFP-Pam3csk-4h GSE103477.CEBPB.THP-1_eGFP-Pam3csk-4h 350 bp overlap
ChIP U-937 GSE142197.CEBPB.U-937 167 bp overlap
ChIP U-937_ZnSO4 GSE142197.CEBPB.U-937_ZnSO4 170 bp overlap
ChIP WA01 ENCSR000EBV.CEBPB.WA01 107 bp overlap
ChIP hMSC GSE68864.CEBPB.hMSC 59 bp overlap
ChIP monocyte_IFNg-LPS GSE120943.CEBPB.monocyte_IFNg-LPS 80 bp overlap
ChIP monocyte_MACROPHAGE GSE31621.CEBPB.monocyte_MACROPHAGE 61 bp overlap
CEBPD 1 dataset
ChIP HAEC_IL1b_4h GSE89970.CEBPD.HAEC_IL1b_4h 72 bp overlap
CTCF 1 dataset
ChIP THP-1_macrophage_PMA GSE96800.CTCF.THP-1_macrophage_PMA 194 bp overlap
Cebpa 24 datasets
ChIP BLaER1 ENCFF031ISE 211 bp overlap
ChIP BLaER1 ENCFF093OYK 231 bp overlap
ChIP BLaER1 ENCFF140EYR 171 bp overlap
ChIP BLaER1 ENCFF205PMS 59 bp overlap
ChIP BLaER1 ENCFF234NTO 107 bp overlap
ChIP BLaER1 ENCFF250ODG 94 bp overlap
ChIP BLaER1 ENCFF262VBH 248 bp overlap
ChIP BLaER1 ENCFF274GAT 181 bp overlap
ChIP BLaER1 ENCFF335XTP 254 bp overlap
ChIP BLaER1 ENCFF341QPD 61 bp overlap
ChIP BLaER1 ENCFF346MCV 253 bp overlap
ChIP BLaER1 ENCFF364PUR 213 bp overlap
ChIP BLaER1 ENCFF374ODN 97 bp overlap
ChIP BLaER1 ENCFF399AYC 186 bp overlap
ChIP BLaER1 ENCFF419EBE 114 bp overlap
ChIP BLaER1 ENCFF460KDD 458 bp overlap
ChIP BLaER1 ENCFF508JZF 53 bp overlap
ChIP BLaER1 ENCFF538NOH 88 bp overlap
ChIP BLaER1 ENCFF680YXW 308 bp overlap
ChIP BLaER1 ENCFF798NMV 280 bp overlap
ChIP BLaER1 ENCFF844FIP 164 bp overlap
ChIP BLaER1 ENCFF858JKM 177 bp overlap
ChIP BLaER1 ENCFF896HSY 221 bp overlap
ChIP BLaER1 ENCFF952XLX 83 bp overlap
EP300 2 datasets
ChIP Kasumi-1 GSE115115.EP300.Kasumi-1 53 bp overlap
ChIP tibial nerve ENCFF346AYA 106 bp overlap
ERG 1 dataset
ChIP TSU-1621MT_ATRA GSE60477.ERG.TSU-1621MT_ATRA 289 bp overlap
ESR1 1 dataset
ChIP MCF-7_TAMR_E2 GSE86538.ESR1.MCF-7_TAMR_E2 116 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 534 bp overlap
ChIP DE DE-FOXA2-2 543 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 417 bp overlap
ChIP DE DE-GATA4-2 542 bp overlap
GATA6 6 datasets
ChIP DE DE-GATA6-1 486 bp overlap
ChIP DE DE-GATA6-2 513 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 347 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 367 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 416 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 324 bp overlap
HEXIM1 1 dataset
ChIP HCT-116 GSE72622.HEXIM1.HCT-116 59 bp overlap
KDM1A 1 dataset
ChIP NB4_DMSO GSE128528.KDM1A.NB4_DMSO 110 bp overlap
KMT2A 4 datasets
ChIP MOLM-13_VTP-d3-180110 GSE127507.KMT2A.MOLM-13_VTP-d3-180110 98 bp overlap
ChIP MV4-11 GSE79899.KMT2A.MV4-11 210 bp overlap
ChIP RS4-11_VTP-d3-180402 GSE127507.KMT2A.RS4-11_VTP-d3-180402 75 bp overlap
ChIP THP-1 GSE83671.KMT2A.THP-1 226 bp overlap
LDB1 2 datasets
ChIP Kasumi-1_ctrl GSE121280.LDB1.Kasumi-1_ctrl 80 bp overlap
ChIP Kasumi-1_siRE GSE121280.LDB1.Kasumi-1_siRE 102 bp overlap
MAX 1 dataset
ChIP NB4 ENCFF966MWB 137 bp overlap
MECOM 1 dataset
ChIP SKH1_CEBPA-ER_E2 GSE102697.MECOM.SKH1_CEBPA-ER_E2 177 bp overlap
MLLT3 1 dataset
ChIP THP-1 GSE79899.MLLT3.THP-1 131 bp overlap
MYB 2 datasets
ChIP THP-1 GSE90769.MYB.THP-1 88 bp overlap
ChIP THP-1_OG86 GSE90769.MYB.THP-1_OG86 73 bp overlap
MYC 2 datasets
ChIP CD34 GSE85488.MYC.CD34 52 bp overlap
ChIP NCI-H128 GSE41105.MYC.NCI-H128 71 bp overlap
NCOA1 1 dataset
ChIP MCF-7 ERP000901.NCOA1.MCF-7 96 bp overlap
OGG1 2 datasets
ChIP HEK293_15min GSE89017.OGG1.HEK293_15min 50 bp overlap
ChIP HEK293_30_min GSE89017.OGG1.HEK293_30_min 51 bp overlap
POLR2A 1 dataset
ChIP tibial nerve ENCFF983HAU 335 bp overlap
RAD21 7 datasets
ChIP THP-1_Pam3csk-000m-Flavo-000m GSE103477.RAD21.THP-1_Pam3csk-000m-Flavo-000m 102 bp overlap
ChIP THP-1_Pam3csk-000m-Flavo-240m GSE103477.RAD21.THP-1_Pam3csk-000m-Flavo-240m 91 bp overlap
ChIP THP-1_Pam3csk-020m-Flavo-000m GSE103477.RAD21.THP-1_Pam3csk-020m-Flavo-000m 100 bp overlap
ChIP THP-1_Pam3csk-030m-Flavo-000m GSE103477.RAD21.THP-1_Pam3csk-030m-Flavo-000m 70 bp overlap
ChIP THP-1_eGFP-IFNb GSE103477.RAD21.THP-1_eGFP-IFNb 227 bp overlap
ChIP THP-1_siCtrl-eGFP-Pam3csk-4h GSE103477.RAD21.THP-1_siCtrl-eGFP-Pam3csk-4h 135 bp overlap
ChIP peripheral-blood-neutrophil_PMA-1 GSE126755.RAD21.peripheral-blood-neutrophil_PMA-1 67 bp overlap
RARA 1 dataset
ChIP TSU-1621MT GSE60477.RARA.TSU-1621MT 58 bp overlap
REST 1 dataset
ChIP HL-60 ENCFF589LOF 142 bp overlap
RNF2 1 dataset
ChIP ME-1_KD GSE128771.RNF2.ME-1_KD 215 bp overlap
RORC 2 datasets
ChIP HCC70 GSE126380.RORC.HCC70 83 bp overlap
ChIP HCC70_XY018 GSE126380.RORC.HCC70_XY018 60 bp overlap
RUNX1 3 datasets
ChIP NB4 GSE81992.RUNX1.NB4 138 bp overlap
ChIP SKH1_RUNX1-EVI1_KD GSE87283.RUNX1.SKH1_RUNX1-EVI1_KD 63 bp overlap
ChIP THP-1 GSE79899.RUNX1.THP-1 58 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 428 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 273 bp overlap
SMC1A 1 dataset
ChIP monocyte_INFg GSE98367.SMC1A.monocyte_INFg 52 bp overlap
SMC3 1 dataset
ChIP peripheral-blood-neutrophil_Ecoli-1 GSE126755.SMC3.peripheral-blood-neutrophil_Ecoli-1 96 bp overlap
SNAI2 1 dataset
ChIP SMS-CTR_D48 GSE137168.SNAI2.SMS-CTR_D48 138 bp overlap
SPI1 1 dataset
ChIP Kasumi-1_SIRUNX1ETO GSE60130.SPI1.Kasumi-1_SIRUNX1ETO 62 bp overlap
SREBP2 2 datasets
ChIP HCC70 GSE126380.SREBP2.HCC70 80 bp overlap
ChIP HCC70_XY018 GSE126380.SREBP2.HCC70_XY018 93 bp overlap
SUZ12 1 dataset
ChIP HEK293T_PCGF2fl_OHT GSE119618.SUZ12.HEK293T_PCGF2fl_OHT 50 bp overlap
TCF12 1 dataset
ChIP Kasumi-1 GSE23730.TCF12.Kasumi-1 116 bp overlap
TCF3 1 dataset
ChIP Kasumi-1 GSE43834.TCF3.Kasumi-1 63 bp overlap
TRIM24 1 dataset
ChIP MOLM-13_IACS-9571 GSE100571.TRIM24.MOLM-13_IACS-9571 55 bp overlap