chrX : 137,430,864 – 137,431,606
742 bp 45 TFs 2 linked genes
This 742 bp open chromatin element is linked to ZIC3 and ENSG00000283692 and is bound by 45 transcription factors.
Linked Genes
2 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
ZIC3 134.8 kb Distal Multiome+HiCAR
ENSG00000283692 142.8 kb Distal Multiome+HiCAR
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chrX:137,425,864 – 137,436,606
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
45 transcription factors
Source
Cell type
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 570 bp overlap
ATF2 1 dataset
ChIP WA01 ENCSR000BQU.ATF2.WA01 201 bp overlap
BCOR 1 dataset
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 186 bp overlap
CTBP2 1 dataset
ChIP WA01 ENCSR000EUO.CTBP2.WA01 323 bp overlap
CTCF 1 dataset
ChIP astrocyte ENCFF558APA 99 bp overlap
EGR1 2 datasets
ChIP H1 ENCFF451BLH 261 bp overlap
ChIP WA01 ENCSR000BJA.EGR1.WA01 202 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 499 bp overlap
ETS1 2 datasets
ChIP cardiomyocyte_D0 GSE129986.ETS1.cardiomyocyte_D0 236 bp overlap
ChIP hESC ENCSR534VHI.ETS1.hESC 178 bp overlap
ETV5::FIGLA 2 datasets
Motif DE_72h DE_72h-ETV5FIGLA_MA1945.2 14 bp overlap
Motif DE_72h DE_72h-ETV5FIGLA_MA1945.2 14 bp overlap
ETV5::FOXO1 1 dataset
Motif DE_72h DE_72h-ETV5FOXO1_MA1947.2 10 bp overlap
EWSR1-FLI1 1 dataset
Motif DE_72h DE_72h-EWSR1-FLI1_MA0149.1 18 bp overlap
EZH2 2 datasets
ChIP GM23338 ENCSR045YHA.EZH2.GM23338 66 bp overlap
ChIP hepatocyte ENCSR384LYW.EZH2.hepatocyte 742 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 459 bp overlap
ChIP DE DE-FOXA2-2 497 bp overlap
GATA4 3 datasets
ChIP DE DE-GATA4-1 634 bp overlap
ChIP DE DE-GATA4-2 626 bp overlap
ChIP foregut GSE117136.GATA4.foregut 468 bp overlap
GATA6 11 datasets
ChIP DE DE-GATA6-1 585 bp overlap
ChIP DE DE-GATA6-2 630 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 572 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 610 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 644 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 629 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 665 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 679 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 620 bp overlap
ChIP foregut GSE117136.GATA6.foregut 609 bp overlap
ChIP foregut_KO GSE117136.GATA6.foregut_KO 302 bp overlap
GLIS3 1 dataset
ChIP H9_plus GSE109562.GLIS3.H9_plus 279 bp overlap
JUN 5 datasets
ChIP DE_D2 S02-DE-d2-JUN-exp1 547 bp overlap
ChIP DE_D2 S54-DE-d2-JUN-exp2 398 bp overlap
ChIP ESC S34-ESC-d0-JUN-exp2 293 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 306 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 374 bp overlap
MYOG 1 dataset
ChIP RH4_Entinostat-6H GSE116344.MYOG.RH4_Entinostat-6H 206 bp overlap
NANOG 5 datasets
ChIP GM23338 ENCFF065NZG 311 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 447 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 436 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 261 bp overlap
ChIP hESC GSE18292.NANOG.hESC 93 bp overlap
PCGF1 1 dataset
ChIP WA01 GSE104690.PCGF1.WA01 62 bp overlap
POU5F1 2 datasets
ChIP DE_D1 DED1-OCT4_Batch_II 350 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 433 bp overlap
PRDM14 1 dataset
ChIP hESC GSE22767.PRDM14.hESC 440 bp overlap
PRDM9 2 datasets
Motif DE_72h DE_72h-PRDM9_MA1723.2 20 bp overlap
Motif DE_72h DE_72h-PRDM9_MA1723.2 20 bp overlap
RBBP5 1 dataset
ChIP WA01 ENCSR000AQC.RBBP5.WA01 143 bp overlap
RNF2 1 dataset
ChIP HUES-64 GSE104059.RNF2.HUES-64 230 bp overlap
SMAD2 1 dataset
ChIP endoderm GSE29422.SMAD2.endoderm 380 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 624 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 548 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 630 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 489 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 455 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 345 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 561 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 478 bp overlap
SMAD3 2 datasets
ChIP BG03_DIFF_48H GSE36578.SMAD3.BG03_DIFF_48H 136 bp overlap
ChIP endoderm GSE29422.SMAD3.endoderm 376 bp overlap
SMAD4 1 dataset
ChIP endoderm GSE29422.SMAD4.endoderm 287 bp overlap
SMARCA4 1 dataset
ChIP hiPSC GSE124903.SMARCA4.hiPSC 606 bp overlap
SMARCC1 3 datasets
ChIP HS-SY-2 GSE108025.SMARCC1.HS-SY-2 163 bp overlap
ChIP HS-SY-2 GSE108025.SMARCC1.HS-SY-2 184 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 359 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 400 bp overlap
SP5 1 dataset
Motif DE_72h DE_72h-SP5_MA1965.2 6 bp overlap
SS18-SSX 1 dataset
ChIP fibroblast_W164A GSE139053.SS18-SSX.fibroblast_W164A 156 bp overlap
SUZ12 1 dataset
ChIP WA01 ENCSR000ATS.SUZ12.WA01 273 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 283 bp overlap
TEAD4 2 datasets
ChIP MCF-7_BLRP_WT_E2 GSE125594.TEAD4.MCF-7_BLRP_WT_E2 208 bp overlap
ChIP MCF-7_BLRP_WT_Veh GSE125594.TEAD4.MCF-7_BLRP_WT_Veh 287 bp overlap
TRIM28 1 dataset
ChIP hESC GSE115387.TRIM28.hESC 313 bp overlap
YY1 1 dataset
ChIP WA01 ENCSR000BKD.YY1.WA01 151 bp overlap
ZNF143 1 dataset
ChIP WA01 ENCSR000EBW.ZNF143.WA01 165 bp overlap
ZNF189 1 dataset
Motif DE_72h DE_72h-ZNF189_MA1725.2 9 bp overlap
ZNF320 1 dataset
Motif DE_72h DE_72h-ZNF320_MA1976.2 20 bp overlap
ZNF366 2 datasets
ChIP HEK293 ENCFF799ATK 71 bp overlap
ChIP HEK293 ENCSR106EBH.ZNF366.HEK293 80 bp overlap
ZNF512 2 datasets
ChIP K-562 ENCSR591CCL.ZNF512.K-562 60 bp overlap
ChIP WTC11 ENCFF086TTM 397 bp overlap
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