chrX : 97,060,128 – 97,060,356

228 bp 54 TFs 0 linked genes

This 228 bp open chromatin element has no linked target genes and is bound by 54 transcription factors.

Linked Genes

No linked genes

Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

54 transcription factors

ASXL3 1 dataset

ChIP NCI-H1963_Ab1 GSE145028.ASXL3.NCI-H1963_Ab1 152 bp overlap

ATF2 1 dataset

ChIP WA01 ENCSR000BQU.ATF2.WA01 196 bp overlap

BCOR 3 datasets

ChIP WA01 GSE104690.BCOR.WA01 190 bp overlap

ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 180 bp overlap

ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 216 bp overlap

CHD7 2 datasets

ChIP WA01 ENCSR000AVA.CHD7.WA01 132 bp overlap

ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 228 bp overlap

Cebpa 1 dataset

ChIP BLaER1 ENCFF680YXW 214 bp overlap

EOMES 1 dataset

ChIP hESC GSE26097.EOMES.hESC 144 bp overlap

EP300 1 dataset

ChIP WA01 ENCSR000BKK.EP300.WA01 132 bp overlap

FOXP1 1 dataset

ChIP H9 GSE31006.FOXP1.H9 124 bp overlap

GATA1 1 dataset

ChIP K-562_dCas9-LSD1 GSE132212.GATA1.K-562_dCas9-LSD1 145 bp overlap

GLIS1 1 dataset

Motif DE_12h DE_12h-GLIS1_MA0735.2 15 bp overlap

GLIS2 1 dataset

Motif DE_12h DE_12h-GLIS2_MA0736.1 14 bp overlap

GLIS3 1 dataset

Motif DE_12h DE_12h-GLIS3_MA0737.1 14 bp overlap

MAX 1 dataset

ChIP WA01 ENCSR000EUP.MAX.WA01 155 bp overlap

MORC2 1 dataset

ChIP H9 GSE95374.MORC2.H9 179 bp overlap

NANOG 8 datasets

ChIP H1 ENCFF747ZPQ 214 bp overlap

ChIP HUES-8 GSE109524.NANOG.HUES-8 228 bp overlap

ChIP WA01 ENCSR000BMT.NANOG.WA01 226 bp overlap

ChIP WA01 ERP004238.NANOG.WA01 208 bp overlap

ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 228 bp overlap

ChIP WA09 GSE105028.NANOG.WA09 228 bp overlap

ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 228 bp overlap

ChIP hESC GSE18292.NANOG.hESC 99 bp overlap

NIPBL 1 dataset

ChIP hESC_WNT3A_ACTIVIN GSE64758.NIPBL.hESC_WNT3A_ACTIVIN 188 bp overlap

NKX2-3 1 dataset

Motif DE_12h DE_12h-NKX2-3_MA0672.2 8 bp overlap

NKX2-4 1 dataset

Motif DE_12h DE_12h-NKX2-4_MA2003.2 8 bp overlap

NKX2-8 1 dataset

Motif DE_12h DE_12h-NKX2-8_MA0673.2 8 bp overlap

NR4A1 1 dataset

Motif DE_12h DE_12h-NR4A1_MA1112.3 8 bp overlap

NR4A2 1 dataset

Motif DE_12h DE_12h-NR4A2_MA0160.3 8 bp overlap

PCGF1 1 dataset

ChIP WA01 GSE104690.PCGF1.WA01 94 bp overlap

POU5F1 2 datasets

ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 228 bp overlap

ChIP hiPSC GSE56567.POU5F1.hiPSC 190 bp overlap

RARA 3 datasets

Motif DE_12h DE_12h-RARA_MA0730.1 17 bp overlap

ChIP hiPSC_D3 GSE109172.RARA.hiPSC_D3 198 bp overlap

ChIP hiPSC_D4 GSE109172.RARA.hiPSC_D4 198 bp overlap

RARA::RXRA 1 dataset

Motif DE_12h DE_12h-RARARXRA_MA0159.1 17 bp overlap

RARA::RXRG 1 dataset

Motif DE_12h DE_12h-RARARXRG_MA1149.2 17 bp overlap

REST 2 datasets

ChIP WA01 ENCSR000BHM.REST.WA01 149 bp overlap

ChIP neural ENCSR000BTV.REST.neural 206 bp overlap

RXR 1 dataset

ChIP pancreatic-progenitor_PP1 GSE104840.RXR.pancreatic-progenitor_PP1 155 bp overlap

RXRA 2 datasets

ChIP H1 ENCFF570NHK 201 bp overlap

ChIP WA01 ENCSR000BJW.RXRA.WA01 206 bp overlap

Rarb 1 dataset

Motif DE_12h DE_12h-Rarb_MA0858.1 17 bp overlap

SMAD1 1 dataset

ChIP BG03 GSE36578.SMAD1.BG03 113 bp overlap

SMAD2 1 dataset

ChIP hESC GSE29422.SMAD2.hESC 131 bp overlap

SMAD2-3 1 dataset

ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 228 bp overlap

SMAD3 1 dataset

ChIP BG03_DIFF_2H GSE36578.SMAD3.BG03_DIFF_2H 227 bp overlap

SMARCA4 1 dataset

ChIP hiPSC GSE124903.SMARCA4.hiPSC 184 bp overlap

SMARCC1 1 dataset

ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 228 bp overlap

SOX18 1 dataset

Motif DE_12h DE_12h-SOX18_MA1563.2 8 bp overlap

SOX2 2 datasets

ChIP HNSC GSE69479.SOX2.HNSC 228 bp overlap

ChIP hiPSC GSE56567.SOX2.hiPSC 209 bp overlap

SOX4 1 dataset

Motif DE_12h DE_12h-SOX4_MA0867.3 8 bp overlap

SOX8 1 dataset

Motif DE_12h DE_12h-SOX8_MA0868.3 7 bp overlap

SOX9 1 dataset

Motif DE_12h DE_12h-SOX9_MA0077.2 8 bp overlap

SP1 1 dataset

ChIP WA01 ENCSR000BIR.SP1.WA01 192 bp overlap

SREBF2 1 dataset

Motif DE_12h DE_12h-SREBF2_MA0596.1 10 bp overlap

Six3 1 dataset

Motif DE_12h DE_12h-Six3_MA0631.2 11 bp overlap

Sox5 1 dataset

Motif DE_12h DE_12h-Sox5_MA0087.3 8 bp overlap

T 1 dataset

ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 197 bp overlap

TCF12 1 dataset

ChIP WA01 ENCSR000BIT.TCF12.WA01 169 bp overlap

TP53 1 dataset

ChIP hESC_DIFF GSE39912.TP53.hESC_DIFF 226 bp overlap

USF1 1 dataset

ChIP WA01 ENCSR000BIU.USF1.WA01 148 bp overlap

YY1 3 datasets

ChIP H1 ENCFF524BTL 228 bp overlap

ChIP WA01 ENCSR000BKD.YY1.WA01 228 bp overlap

ChIP WA01 GSE39096.YY1.WA01 116 bp overlap

ZIC1 1 dataset

Motif DE_12h DE_12h-ZIC1_MA0696.1 14 bp overlap

ZIC4 1 dataset

Motif DE_12h DE_12h-ZIC4_MA0751.2 14 bp overlap

ZIC5 1 dataset

Motif DE_12h DE_12h-ZIC5_MA1584.2 15 bp overlap

ZNF343 1 dataset

Motif DE_12h DE_12h-ZNF343_MA1711.2 16 bp overlap