chr20 : 14,344,827 – 14,345,011
184 bp 38 TFs 1 linked gene
This 184 bp open chromatin element is linked to FLRT3 and is bound by 38 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
FLRT3 7.2 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr20:14,339,827 – 14,350,011
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
38 transcription factors
Source
Cell type
AHR 1 dataset
ChIP MCF-7_TCDD_45min GSE90550.AHR.MCF-7_TCDD_45min 184 bp overlap
AR 6 datasets
ChIP 22Rv1 GSE96652.AR.22Rv1 122 bp overlap
ChIP 22Rv1_R1881 GSE80742.AR.22Rv1_R1881 155 bp overlap
ChIP DU145_FOXA1_ARQ6540X GSE47987.AR.DU145_FOXA1_ARQ6540X 118 bp overlap
ChIP VCaP GSE148358.AR.VCaP 131 bp overlap
ChIP breast-cancer_ENOB-2854 GSE128018.AR.breast-cancer_ENOB-2854 164 bp overlap
ChIP prostate-cancer_PDX_92 GSE130408.AR.prostate-cancer_PDX_92 184 bp overlap
ARID1A 1 dataset
ChIP MCF-7_Fulvestrant GSE123284.ARID1A.MCF-7_Fulvestrant 184 bp overlap
BRD4 2 datasets
ChIP Kelly_resistant GSE103030.BRD4.Kelly_resistant 135 bp overlap
ChIP Kelly_sensitive GSE103030.BRD4.Kelly_sensitive 157 bp overlap
CEBPA 1 dataset
ChIP T-47D_progesterone GSE132649.CEBPA.T-47D_progesterone 184 bp overlap
EP300 1 dataset
ChIP SK-N-SH ENCSR000EHV.EP300.SK-N-SH 121 bp overlap
ESRRA 1 dataset
ChIP BT-474 GSE81651.ESRRA.BT-474 184 bp overlap
FOXA1 43 datasets
ChIP 22Rv1 GSE96652.FOXA1.22Rv1 137 bp overlap
ChIP 22Rv1_CST GSE123618.FOXA1.22Rv1_CST 119 bp overlap
ChIP 22Rv1_CST GSE129951.FOXA1.22Rv1_CST 155 bp overlap
ChIP 22Rv1_CST_Crispr GSE123618.FOXA1.22Rv1_CST_Crispr 117 bp overlap
ChIP 22Rv1_CST_Crispr-36 GSE123618.FOXA1.22Rv1_CST_Crispr-36 166 bp overlap
ChIP 22Rv1_CST_Crispr_WT3 GSE123618.FOXA1.22Rv1_CST_Crispr_WT3 184 bp overlap
ChIP 22Rv1_Dox GSE85558.FOXA1.22Rv1_Dox 140 bp overlap
ChIP 22Rv1_EtOH GSE80742.FOXA1.22Rv1_EtOH 184 bp overlap
ChIP 22Rv1_R1881 GSE80742.FOXA1.22Rv1_R1881 147 bp overlap
ChIP 22Rv1_TFS GSE123618.FOXA1.22Rv1_TFS 184 bp overlap
ChIP 22Rv1_TFS_Crispr-36 GSE123618.FOXA1.22Rv1_TFS_Crispr-36 93 bp overlap
ChIP 22Rv1_TFS_Crispr_WT3 GSE123618.FOXA1.22Rv1_TFS_Crispr_WT3 182 bp overlap
ChIP 22Rv1_i176m_CST GSE123618.FOXA1.22Rv1_i176m_CST 135 bp overlap
ChIP 22Rv1_r261g_CST GSE123618.FOXA1.22Rv1_r261g_CST 184 bp overlap
ChIP A-549 ENCSR000BPX.FOXA1.A-549 148 bp overlap
ChIP A-549 ENCSR000BRD.FOXA1.A-549 130 bp overlap
ChIP CFPAC-1 GSE119930.FOXA1.CFPAC-1 184 bp overlap
ChIP HEK293_i176m_TFS GSE123618.FOXA1.HEK293_i176m_TFS 111 bp overlap
ChIP HEK293_r261g_TFS GSE123618.FOXA1.HEK293_r261g_TFS 184 bp overlap
ChIP HepG2 ENCFF207NVJ 152 bp overlap
ChIP LAPC-4_CST_DHT GSE123618.FOXA1.LAPC-4_CST_DHT 184 bp overlap
ChIP LAPC-4_TFS_p358fs-V5 GSE123618.FOXA1.LAPC-4_TFS_p358fs-V5 184 bp overlap
ChIP LNCaP_FENG_shFOXA1_Ethanol GSE128883.FOXA1.LNCaP_FENG_shFOXA1_Ethanol 172 bp overlap
ChIP MCF-7 ERP001226.FOXA1.MCF-7 181 bp overlap
ChIP MCF-7 GSE81714.FOXA1.MCF-7 184 bp overlap
ChIP MCF-7_1118 GSE124667.FOXA1.MCF-7_1118 125 bp overlap
ChIP MCF-7_E2 GSE60270.FOXA1.MCF-7_E2 113 bp overlap
ChIP MCF-7_E2_TAM ERP000380.FOXA1.MCF-7_E2_TAM 133 bp overlap
ChIP MCF-7_ETOH GSE23852.FOXA1.MCF-7_ETOH 132 bp overlap
ChIP MCF-7_JC4692 GSE126004.FOXA1.MCF-7_JC4692 184 bp overlap
ChIP MCF-7_JC4693 GSE126004.FOXA1.MCF-7_JC4693 184 bp overlap
ChIP MCF-7_estrogen_ab2 GSE112969.FOXA1.MCF-7_estrogen_ab2 184 bp overlap
ChIP MCF-7_vehicle_ab2 GSE112969.FOXA1.MCF-7_vehicle_ab2 179 bp overlap
ChIP PDAC GSE64557.FOXA1.PDAC 184 bp overlap
ChIP PDAC_KOKLF5 GSE64557.FOXA1.PDAC_KOKLF5 184 bp overlap
ChIP PDAC_SHCTR GSE64557.FOXA1.PDAC_SHCTR 184 bp overlap
ChIP T-47D_CR3flp GSE99479.FOXA1.T-47D_CR3flp 151 bp overlap
ChIP T-47D_shRNF2_8h GSE137579.FOXA1.T-47D_shRNF2_8h 135 bp overlap
ChIP ZR-75-1_vehicle_ab2 GSE112969.FOXA1.ZR-75-1_vehicle_ab2 184 bp overlap
ChIP ZR751_E2_TAM ERP000380.FOXA1.ZR751_E2_TAM 114 bp overlap
ChIP breast-cancer_ENOB-2849 GSE128018.FOXA1.breast-cancer_ENOB-2849 184 bp overlap
ChIP liver ENCSR324RCI.FOXA1.liver 184 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA1.pancreatic-progenitor_PP1 184 bp overlap
FOXA2 10 datasets
ChIP CFPAC-1 GSE119930.FOXA2.CFPAC-1 178 bp overlap
ChIP CFPAC-1_EV GSE119930.FOXA2.CFPAC-1_EV 178 bp overlap
ChIP DE DE-FOXA2-1 184 bp overlap
ChIP DE DE-FOXA2-2 184 bp overlap
ChIP HepG2 ENCFF570ABM 184 bp overlap
ChIP KerCT GSE90454.FOXA2.KerCT 164 bp overlap
ChIP PANC-1_HNF1B-OE GSE119930.FOXA2.PANC-1_HNF1B-OE 175 bp overlap
ChIP liver ENCSR080XEY.FOXA2.liver 148 bp overlap
ChIP liver_CARN1618 ERP008682.FOXA2.liver_CARN1618 149 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA2.pancreatic-progenitor_PP1 184 bp overlap
GATA2 3 datasets
ChIP LNCaP_CSFCS GSE69043.GATA2.LNCaP_CSFCS 88 bp overlap
ChIP SK-N-SH ENCFF764OZD 184 bp overlap
ChIP SK-N-SH ENCSR706VOO.GATA2.SK-N-SH 104 bp overlap
GATA3 8 datasets
ChIP A-549 ENCSR000BTI.GATA3.A-549 138 bp overlap
ChIP CLB-Ga GSE90683.GATA3.CLB-Ga 152 bp overlap
ChIP Kelly GSE65664.GATA3.Kelly 139 bp overlap
ChIP Kelly GSE94822.GATA3.Kelly 108 bp overlap
ChIP MCF-7 ENCFF352QVM 184 bp overlap
ChIP MCF-7 GSE133072.GATA3.MCF-7 129 bp overlap
ChIP MCF-7_sgScr GSE133072.GATA3.MCF-7_sgScr 124 bp overlap
ChIP SK-N-BE2-C GSE94822.GATA3.SK-N-BE2-C 109 bp overlap
GATA4 5 datasets
ChIP DE DE-GATA4-1 163 bp overlap
ChIP DE DE-GATA4-2 184 bp overlap
ChIP foregut GSE117136.GATA4.foregut 184 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 184 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 184 bp overlap
GATA6 6 datasets
ChIP DE DE-GATA6-1 132 bp overlap
ChIP DE DE-GATA6-2 184 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 179 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 158 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 184 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 184 bp overlap
HNF1A 1 dataset
ChIP NY15 GSE108150.HNF1A.NY15 184 bp overlap
HNF1B 2 datasets
ChIP PANC-1_HNF1B-OE GSE119930.HNF1B.PANC-1_HNF1B-OE 79 bp overlap
ChIP PDAC GSE64557.HNF1B.PDAC 184 bp overlap
ISL1 1 dataset
ChIP SK-N-BE2-C GSE94822.ISL1.SK-N-BE2-C 184 bp overlap
MXI1 1 dataset
ChIP SK-N-SH ENCSR000EIA.MXI1.SK-N-SH 151 bp overlap
MYCN 2 datasets
ChIP Kelly GSE94822.MYCN.Kelly 184 bp overlap
ChIP SK-N-BE2-C GSE94822.MYCN.SK-N-BE2-C 129 bp overlap
NEUROD1 3 datasets
ChIP D283-Med GSE92582.NEUROD1.D283-Med 184 bp overlap
ChIP D283-Med_shNEUROD1-1579 GSE92582.NEUROD1.D283-Med_shNEUROD1-1579 184 bp overlap
ChIP D341-Med_shGFP GSE92582.NEUROD1.D341-Med_shGFP 128 bp overlap
NKX3-1 1 dataset
ChIP islet ERP004003.NKX3-1.islet 91 bp overlap
NR3C1 1 dataset
ChIP A-549 ENCSR000BHF.NR3C1.A-549 129 bp overlap
PBX1 2 datasets
ChIP A-549 ENCSR637RKG.PBX1.A-549 184 bp overlap
ChIP A549 ENCFF475JCE 184 bp overlap
PKNOX1 1 dataset
ChIP MCF-7 ENCSR986XYK.PKNOX1.MCF-7 156 bp overlap
POU2F1 1 dataset
ChIP 22Rv1_Veh GSE123565.POU2F1.22Rv1_Veh 134 bp overlap
RAD21 1 dataset
ChIP SK-N-SH ENCSR000EHX.RAD21.SK-N-SH 118 bp overlap
RCOR1 1 dataset
ChIP SK-N-SH ENCSR009TKN.RCOR1.SK-N-SH 143 bp overlap
REST 1 dataset
ChIP A-549 ENCSR000BQP.REST.A-549 146 bp overlap
RFX1 4 datasets
ChIP MCF-7 ENCFF782EZS 184 bp overlap
ChIP MCF-7 ENCFF973QAD 184 bp overlap
ChIP MCF-7 ENCSR066TET.RFX1.MCF-7 184 bp overlap
ChIP MCF-7 ENCSR788XNX.RFX1.MCF-7 184 bp overlap
SMARCA4 10 datasets
ChIP A-549_AG15677 GSE132290.SMARCA4.A-549_AG15677 167 bp overlap
ChIP A-549_AG15678 GSE132290.SMARCA4.A-549_AG15678 123 bp overlap
ChIP A-549_AG15684 GSE132290.SMARCA4.A-549_AG15684 184 bp overlap
ChIP A-549_AG15685 GSE132290.SMARCA4.A-549_AG15685 184 bp overlap
ChIP A-549_AG15721 GSE132290.SMARCA4.A-549_AG15721 180 bp overlap
ChIP A-549_AG15722 GSE132290.SMARCA4.A-549_AG15722 152 bp overlap
ChIP A-549_AG15723 GSE132290.SMARCA4.A-549_AG15723 169 bp overlap
ChIP A-549_AG15724 GSE132290.SMARCA4.A-549_AG15724 169 bp overlap
ChIP A-549_AG15725 GSE132290.SMARCA4.A-549_AG15725 113 bp overlap
ChIP NSC GSE125033.SMARCA4.NSC 159 bp overlap
SMARCC1 1 dataset
ChIP DE_D1 S15-DE-d1-BAF155-exp1 181 bp overlap
SP1 1 dataset
ChIP A-549 ENCSR000BPE.SP1.A-549 138 bp overlap
TBX2 2 datasets
ChIP Kelly GSE94822.TBX2.Kelly 184 bp overlap
ChIP SK-N-BE2-C GSE94822.TBX2.SK-N-BE2-C 153 bp overlap
TCF12 1 dataset
ChIP A-549 ENCSR000BQQ.TCF12.A-549 176 bp overlap
TFAP2B 1 dataset
ChIP SK-N-SH ENCFF869XXQ 184 bp overlap
TFAP2C 1 dataset
ChIP MCF-7_E2 GSE23852.TFAP2C.MCF-7_E2 184 bp overlap
TLE3 1 dataset
ChIP 22Rv1_WT3_Crispr GSE123618.TLE3.22Rv1_WT3_Crispr 106 bp overlap
TRPS1 1 dataset
ChIP MCF-7 GSE133072.TRPS1.MCF-7 142 bp overlap
USF1 1 dataset
ChIP SK-N-SH ENCSR000BMF.USF1.SK-N-SH 156 bp overlap
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