chr19 : 43,673,253 – 43,674,111
858 bp 55 TFs 12 linked genes
This 858 bp open chromatin element is linked to 12 target genes and is bound by 55 transcription factors.
Linked Genes
12 genes
Distance
Link type
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
PLAUR 4.9 kb Proximal Proximity
ZNF428 54.2 kb Distal Multiome
ZNF576 77.5 kb Distal Multiome
IRGQ 77.7 kb Distal Multiome
SMG9 81.1 kb Distal Multiome
PINLYP 93.3 kb Distal Multiome
XRCC1 93.4 kb Distal Multiome
ETHE1 146.6 kb Distal Multiome
ZNF283 153.6 kb Distal Multiome
ZNF404 210.1 kb Distal Multiome
ENSG00000267058 227.9 kb Distal Multiome
ZNF45 261.4 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr19:43,668,253 – 43,679,111
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
55 transcription factors
Source
Cell type
ADNP 1 dataset
ChIP K562 ENCFF492SKF 443 bp overlap
ATF1 1 dataset
ChIP K562 ENCFF817JQF 100 bp overlap
BRD4 1 dataset
ChIP THP-1_DMSO-PMA GSE138084.BRD4.THP-1_DMSO-PMA 499 bp overlap
Bach1::Mafk 1 dataset
Motif DE_72h DE_72h-Bach1Mafk_MA0591.2 12 bp overlap
CBFA2T2 2 datasets
ChIP K-562 ENCSR699PVC.CBFA2T2.K-562 193 bp overlap
ChIP K562 ENCFF963TXY 381 bp overlap
CBFA2T3 2 datasets
ChIP K-562 ENCSR697YLJ.CBFA2T3.K-562 293 bp overlap
ChIP K562 ENCFF673OEZ 202 bp overlap
CEBPB 2 datasets
ChIP HL-60_CEBPB_overexpressed GSE100486.CEBPB.HL-60_CEBPB_overexpressed 196 bp overlap
ChIP K-562 ENCSR000BRQ.CEBPB.K-562 123 bp overlap
CEBPD 1 dataset
ChIP K-562 ENCSR000BVY.CEBPD.K-562 162 bp overlap
ELF4 1 dataset
ChIP HEK293T ENCFF509MGU 358 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 255 bp overlap
FOS 1 dataset
ChIP HCT-116_A7A GSE152144.FOS.HCT-116_A7A 271 bp overlap
FOSL2 1 dataset
Motif DE_72h DE_72h-FOSL2_MA0478.2 10 bp overlap
FOXA2 1 dataset
ChIP DE DE-FOXA2-1 419 bp overlap
GATA1 4 datasets
ChIP CD34_Day7_30min GSE104676.GATA1.CD34_Day7_30min 87 bp overlap
ChIP HUDEP-2_30min GSE104676.GATA1.HUDEP-2_30min 128 bp overlap
ChIP K-562 GSE107726.GATA1.K-562 227 bp overlap
ChIP K-562_enCRISPRi-LK GSE132212.GATA1.K-562_enCRISPRi-LK 138 bp overlap
GATA1::TAL1 1 dataset
Motif DE_72h DE_72h-GATA1TAL1_MA0140.3 17 bp overlap
GATA2 2 datasets
Motif DE_72h DE_72h-GATA2_MA0036.4 7 bp overlap
ChIP TF1 GSE73207.GATA2.TF1 180 bp overlap
GATA4 5 datasets
ChIP DE DE-GATA4-1 858 bp overlap
ChIP DE DE-GATA4-2 858 bp overlap
Motif DE_72h DE_72h-GATA4_MA0482.3 8 bp overlap
ChIP foregut GSE117136.GATA4.foregut 378 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 241 bp overlap
GATA5 1 dataset
Motif DE_72h DE_72h-GATA5_MA0766.3 8 bp overlap
GATA6 14 datasets
ChIP AGS GSE51705.GATA6.AGS 258 bp overlap
ChIP Caco-2_PROLIF GSE23436.GATA6.Caco-2_PROLIF 102 bp overlap
ChIP DE DE-GATA6-1 837 bp overlap
ChIP DE DE-GATA6-2 858 bp overlap
Motif DE_72h DE_72h-GATA6_MA1104.3 8 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 500 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 446 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 429 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 858 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 494 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 442 bp overlap
ChIP YCC-3 GSE51705.GATA6.YCC-3 212 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 467 bp overlap
ChIP foregut GSE117136.GATA6.foregut 425 bp overlap
Gata3 1 dataset
Motif DE_72h DE_72h-Gata3_MA0037.5 8 bp overlap
Hand1::Tcf3 1 dataset
Motif DE_72h DE_72h-Hand1Tcf3_MA0092.2 9 bp overlap
JMJD1C 1 dataset
ChIP NB4 GSE63484.JMJD1C.NB4 354 bp overlap
JUN 1 dataset
ChIP DE_D2 S02-DE-d2-JUN-exp1 248 bp overlap
JUND 1 dataset
ChIP K-562 ENCSR000EGN.JUND.K-562 111 bp overlap
KDM1A 1 dataset
ChIP NB4_DMSO GSE128528.KDM1A.NB4_DMSO 282 bp overlap
Lhx3 1 dataset
Motif DE_72h DE_72h-Lhx3_MA0135.2 12 bp overlap
MAF::NFE2 1 dataset
Motif DE_72h DE_72h-MAFNFE2_MA0501.2 11 bp overlap
MAFG::NFE2L1 1 dataset
Motif DE_72h DE_72h-MAFGNFE2L1_MA0089.3 11 bp overlap
MAFK 1 dataset
Motif DE_72h DE_72h-MAFK_MA0496.4 10 bp overlap
MGA::EVX1 1 dataset
Motif DE_72h DE_72h-MGAEVX1_MA1960.2 11 bp overlap
Mafg 1 dataset
Motif DE_72h DE_72h-Mafg_MA0659.4 12 bp overlap
NFATC3 1 dataset
Motif DE_72h DE_72h-NFATC3_MA0625.3 6 bp overlap
NFE2 1 dataset
ChIP ProEs GSE59087.NFE2.ProEs 96 bp overlap
Nfatc1 1 dataset
Motif DE_72h DE_72h-Nfatc1_MA0624.3 6 bp overlap
Nfe2l2 1 dataset
Motif DE_72h DE_72h-Nfe2l2_MA0150.3 11 bp overlap
RAD21 1 dataset
ChIP peripheral-blood-neutrophil_PMA-1 GSE126755.RAD21.peripheral-blood-neutrophil_PMA-1 343 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 644 bp overlap
SMAD2_3 2 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 401 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 254 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 273 bp overlap
SP5 1 dataset
Motif DE_72h DE_72h-SP5_MA1965.2 6 bp overlap
SREBP2 1 dataset
ChIP monocyte_TNF GSE129202.SREBP2.monocyte_TNF 620 bp overlap
SRF 1 dataset
Motif DE_72h DE_72h-SRF_MA0083.3 16 bp overlap
Stat6 1 dataset
Motif DE_72h DE_72h-Stat6_MA0520.2 10 bp overlap
TAL1 8 datasets
ChIP K-562 GSE107726.TAL1.K-562 243 bp overlap
ChIP K-562 ENCSR000EHB.TAL1.K-562 147 bp overlap
ChIP K-562_dCas9-KRAB GSE132212.TAL1.K-562_dCas9-KRAB 155 bp overlap
ChIP K-562_dCas9-LSD1 GSE132212.TAL1.K-562_dCas9-LSD1 190 bp overlap
ChIP K-562_enCRISPRi-KL GSE132212.TAL1.K-562_enCRISPRi-KL 186 bp overlap
ChIP K-562_enCRISPRi-LK GSE132212.TAL1.K-562_enCRISPRi-LK 187 bp overlap
ChIP K562 ENCFF620GMX 385 bp overlap
ChIP ProEs GSE59087.TAL1.ProEs 191 bp overlap
TCF3 1 dataset
ChIP Kasumi-1 GSE43834.TCF3.Kasumi-1 155 bp overlap
TP63 1 dataset
Motif DE_72h DE_72h-TP63_MA0525.2 18 bp overlap
TRPS1 1 dataset
Motif DE_72h DE_72h-TRPS1_MA1970.2 8 bp overlap
ZEB2 1 dataset
ChIP K562 ENCFF975RXS 390 bp overlap
ZIM3 1 dataset
Motif DE_72h DE_72h-ZIM3_MA1709.2 11 bp overlap
ZMYM3 2 datasets
ChIP K-562 ENCSR102KIN.ZMYM3.K-562 251 bp overlap
ChIP K-562_Ab_JH39-2-2F10 GSE97661.ZMYM3.K-562_Ab_JH39-2-2F10 186 bp overlap
ZNF121 1 dataset
ChIP HEK293 ENCFF839FUF 441 bp overlap
ZNF157 1 dataset
Motif DE_72h DE_72h-ZNF157_MA2331.1 21 bp overlap
ZNF354C 1 dataset
Motif DE_72h DE_72h-ZNF354C_MA0130.1 6 bp overlap
ZNF460 1 dataset
Motif DE_72h DE_72h-ZNF460_MA1596.1 16 bp overlap
ZNF682 1 dataset
Motif DE_72h DE_72h-ZNF682_MA1599.2 11 bp overlap
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