chr18 : 49,499,108 49,499,390
282 bp 40 TFs 4 linked genes
This 282 bp open chromatin element is linked to 4 target genes and is bound by 40 transcription factors.
Linked Genes
4 genes
Distance
Gene Expression Dist. to TSS Distance Link type
LINC02837 at TSS At TSS Proximity
RPL17 6.6 kb Proximal Proximity
RPL17-C18orf32 6.6 kb Proximal Proximity
SNORD58B 7.4 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr18:49,494,108 – 49,504,390
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
40 transcription factors
Source
Cell type
AR 2 datasets
ChIP MDA-MB-453 ERP003503.AR.MDA-MB-453 59 bp overlap
ChIP prostate_fetal-fibroblast GSE90772.AR.prostate_fetal-fibroblast 198 bp overlap
BCL11A 3 datasets
ChIP CD34_Day5_30min GSE104676.BCL11A.CD34_Day5_30min 53 bp overlap
ChIP CD34_Day9_30min GSE104676.BCL11A.CD34_Day9_30min 59 bp overlap
ChIP HUDEP-2_90min GSE104676.BCL11A.HUDEP-2_90min 93 bp overlap
BCL6 1 dataset
ChIP OCI-Ly1 GSE29282.BCL6.OCI-Ly1 148 bp overlap
BCOR 3 datasets
ChIP K-562 ENCSR808AKZ.BCOR.K-562 92 bp overlap
ChIP WA01 GSE104690.BCOR.WA01 194 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 177 bp overlap
BRD4 3 datasets
ChIP 22Rv1_DHT-ABBV-075 GSE118247.BRD4.22Rv1_DHT-ABBV-075 72 bp overlap
ChIP 22Rv1_DHT-ABBV-744 GSE118247.BRD4.22Rv1_DHT-ABBV-744 108 bp overlap
ChIP retina_AB1-FW15 GSE86981.BRD4.retina_AB1-FW15 252 bp overlap
CBX2 1 dataset
ChIP HEK293T GSE34774.CBX2.HEK293T 76 bp overlap
CREB1 1 dataset
ChIP WA01 ENCSR000BSN.CREB1.WA01 143 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF262VBH 184 bp overlap
E2F6 1 dataset
ChIP WA01 ENCSR000BSI.E2F6.WA01 117 bp overlap
EED 1 dataset
ChIP ProEs GSE59087.EED.ProEs 132 bp overlap
EGR1 1 dataset
ChIP A-375 GSE116190.EGR1.A-375 84 bp overlap
ESR1 2 datasets
ChIP Ishikawa_siETV4-72h GSE129803.ESR1.Ishikawa_siETV4-72h 267 bp overlap
ChIP Ishikawa_siNTC-72h GSE129803.ESR1.Ishikawa_siNTC-72h 207 bp overlap
GATA2 1 dataset
ChIP ME-1_CBFB-MYH11-KD GSE117138.GATA2.ME-1_CBFB-MYH11-KD 236 bp overlap
HDAC2 1 dataset
ChIP WA01 ENCSR000AVB.HDAC2.WA01 159 bp overlap
HNRNPH1 2 datasets
ChIP Hep-G2 GSE120104.HNRNPH1.Hep-G2 152 bp overlap
ChIP Hep-G2 ENCSR066FXN.HNRNPH1.Hep-G2 159 bp overlap
IRF4 1 dataset
ChIP OCI-Ly3 GSE142493.IRF4.OCI-Ly3 98 bp overlap
KDM1A 1 dataset
ChIP H1 ENCFF696SGD 180 bp overlap
KDM4C 1 dataset
ChIP KYSE-150 GSE53938.KDM4C.KYSE-150 226 bp overlap
KLF15 1 dataset
ChIP HEK293 GSE76494.KLF15.HEK293 147 bp overlap
KLF4 1 dataset
ChIP hiPSC GSE56567.KLF4.hiPSC 220 bp overlap
KLF5 1 dataset
ChIP HEK293_D418N GSE88976.KLF5.HEK293_D418N 168 bp overlap
NFKB1 1 dataset
ChIP HEK293T_2KR GSE129618.NFKB1.HEK293T_2KR 248 bp overlap
NFYB 1 dataset
ChIP Hep-G2 ENCSR935GZV.NFYB.Hep-G2 182 bp overlap
POLR2A 1 dataset
ChIP GM23338 ENCFF450WCS 282 bp overlap
POU2F1 2 datasets
ChIP 22Rv1_DHT GSE123565.POU2F1.22Rv1_DHT 265 bp overlap
ChIP 22Rv1_Veh GSE123565.POU2F1.22Rv1_Veh 282 bp overlap
POU4F2 1 dataset
ChIP HNPC_DIF GSE74814.POU4F2.HNPC_DIF 149 bp overlap
POU5F1 4 datasets
ChIP BG03 GSE21614.POU5F1.BG03 217 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 100 bp overlap
ChIP SKM-1 GSE93706.POU5F1.SKM-1 96 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 282 bp overlap
REST 1 dataset
ChIP PANC-1 ENCSR000BJO.REST.PANC-1 120 bp overlap
RUNX1T1 1 dataset
ChIP Kasumi-1 GSE102697.RUNX1T1.Kasumi-1 142 bp overlap
SOX2 1 dataset
ChIP hiPSC GSE56567.SOX2.hiPSC 239 bp overlap
SP1 1 dataset
ChIP HEK293 GSE76494.SP1.HEK293 148 bp overlap
SP4 1 dataset
ChIP HEK293 GSE76494.SP4.HEK293 229 bp overlap
T 1 dataset
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 183 bp overlap
TP53 1 dataset
ChIP Calu-1_MUT8-COMB GSE128673.TP53.Calu-1_MUT8-COMB 123 bp overlap
TRIM28 1 dataset
ChIP AF22 GSE84259.TRIM28.AF22 132 bp overlap
ZNF143 1 dataset
ChIP FLP143HA_T4 GSE39263.ZNF143.FLP143HA_T4 56 bp overlap
ZNF24 1 dataset
ChIP K-562 ENCSR099NCH.ZNF24.K-562 240 bp overlap
ZNF629 1 dataset
ChIP HepG2 ENCFF490FFQ 91 bp overlap