chr18 : 46,661,070 – 46,661,299
229 bp 44 TFs 1 linked gene
This 229 bp open chromatin element is linked to LOXHD1 and is bound by 44 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
LOXHD1 3.9 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr18:46,656,070 – 46,666,299
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
44 transcription factors
Source
Cell type
ATF3 2 datasets
ChIP H1 ENCFF852GZY 191 bp overlap
ChIP WA01 ENCSR000BKC.ATF3.WA01 165 bp overlap
BRD4 2 datasets
ChIP cortical-interneuron_R133C_KCl-neg_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-neg_JQ1-neg 216 bp overlap
ChIP cortical-interneuron_R133C_KCl-pos_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-pos_JQ1-neg 206 bp overlap
CBFA2T2 1 dataset
ChIP NCCIT GSE71675.CBFA2T2.NCCIT 152 bp overlap
CHD2 2 datasets
ChIP H1 ENCFF991MKH 229 bp overlap
ChIP WA01 ENCSR000EBT.CHD2.WA01 153 bp overlap
CLOCK 1 dataset
ChIP BA40_3 GSE96659.CLOCK.BA40_3 119 bp overlap
CREB1 1 dataset
ChIP LNCaP-abl_SHFOXA1 GSE63034.CREB1.LNCaP-abl_SHFOXA1 192 bp overlap
CTCF 24 datasets
ChIP dorsolateral prefrontal cortex ENCFF041CKA 229 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF230SFD 229 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF235CPK 229 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF245PVD 229 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF245PVD 180 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF257LSY 229 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF265AZL 227 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF267VHH 229 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF267VHH 229 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF277CZQ 160 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF277CZQ 187 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF354RKX 229 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF377YBQ 229 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF394MUG 229 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF403LNW 229 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF433UFM 229 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF433UFM 220 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF458OBF 229 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF483ZLP 229 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF595WAL 229 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF748IBN 229 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF767LNC 229 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF835ZSJ 229 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF974AQC 229 bp overlap
DDX21 1 dataset
ChIP A-375 GSE128080.DDX21.A-375 140 bp overlap
DPF1 2 datasets
ChIP K-562 GSE97661.DPF1.K-562 77 bp overlap
ChIP MCF-7 GSE97661.DPF1.MCF-7 193 bp overlap
EZH2 1 dataset
ChIP RH30_DMSO GSE85169.EZH2.RH30_DMSO 196 bp overlap
HAND2 2 datasets
Motif DE_12h DE_12h-HAND2_MA1638.2 6 bp overlap
Motif ES_0h ES_0h-HAND2_MA1638.2 6 bp overlap
HNF4A 1 dataset
Motif DE_12h DE_12h-HNF4A_MA0114.5 9 bp overlap
HNF4G 1 dataset
Motif DE_12h DE_12h-HNF4G_MA0484.3 9 bp overlap
INSM1 2 datasets
Motif DE_12h DE_12h-INSM1_MA0155.1 12 bp overlap
Motif ES_0h ES_0h-INSM1_MA0155.1 12 bp overlap
JUN::JUNB 2 datasets
Motif DE_12h DE_12h-JUNJUNB_MA1132.2 8 bp overlap
Motif ES_0h ES_0h-JUNJUNB_MA1132.2 8 bp overlap
MAX 4 datasets
ChIP K-562 ENCSR000EFV.MAX.K-562 119 bp overlap
ChIP WA01 ENCSR000EUP.MAX.WA01 126 bp overlap
ChIP endothelial cell of umbilical vein ENCFF100YIN 209 bp overlap
ChIP endothelial_umbilical-vein ENCSR000EEZ.MAX.endothelial_umbilical-vein 129 bp overlap
MITF 2 datasets
Motif DE_12h DE_12h-MITF_MA0620.4 10 bp overlap
Motif ES_0h ES_0h-MITF_MA0620.4 10 bp overlap
MXI1 2 datasets
Motif DE_12h DE_12h-MXI1_MA1108.3 6 bp overlap
Motif ES_0h ES_0h-MXI1_MA1108.3 6 bp overlap
MYOD1 3 datasets
ChIP IMR-90_GM GSE128527.MYOD1.IMR-90_GM 196 bp overlap
ChIP myoblast GSE50413.MYOD1.myoblast 140 bp overlap
ChIP rhabdomyosarcoma GSE50413.MYOD1.rhabdomyosarcoma 139 bp overlap
NEUROG2 6 datasets
ChIP MRC-5_NFD_02DPT GSE75910.NEUROG2.MRC-5_NFD_02DPT 229 bp overlap
ChIP MRC-5_NFD_05DPT GSE75910.NEUROG2.MRC-5_NFD_05DPT 229 bp overlap
ChIP MRC-5_NFD_1DPT GSE75910.NEUROG2.MRC-5_NFD_1DPT 229 bp overlap
ChIP MRC-5_N_02DPT GSE75910.NEUROG2.MRC-5_N_02DPT 215 bp overlap
ChIP MRC-5_N_05DPT GSE75910.NEUROG2.MRC-5_N_05DPT 226 bp overlap
ChIP MRC-5_N_1DPT GSE75910.NEUROG2.MRC-5_N_1DPT 229 bp overlap
NFYA 5 datasets
Motif DE_12h DE_12h-NFYA_MA0060.4 8 bp overlap
Motif ES_0h ES_0h-NFYA_MA0060.4 8 bp overlap
ChIP HeLa-S3 ENCSR000DNS.NFYA.HeLa-S3 170 bp overlap
ChIP Hep-G2 ENCSR124APT.NFYA.Hep-G2 172 bp overlap
ChIP K-562 GSE26439.NFYA.K-562 187 bp overlap
NFYB 12 datasets
Motif DE_12h DE_12h-NFYB_MA0502.3 9 bp overlap
Motif ES_0h ES_0h-NFYB_MA0502.3 9 bp overlap
ChIP GM12878 ENCFF474DNH 229 bp overlap
ChIP GM12878 ENCSR000DNM.NFYB.GM12878 229 bp overlap
ChIP HeLa-S3 ENCFF854TNJ 229 bp overlap
ChIP HeLa-S3 ENCSR000DNR.NFYB.HeLa-S3 229 bp overlap
ChIP Hep-G2 ENCSR935GZV.NFYB.Hep-G2 229 bp overlap
ChIP HepG2 ENCFF174VYX 229 bp overlap
ChIP K-562 ENCSR000EGQ.NFYB.K-562 229 bp overlap
ChIP K-562 GSE26439.NFYB.K-562 229 bp overlap
ChIP K562 ENCFF709RXX 172 bp overlap
ChIP WTC11 ENCFF751ZTQ 229 bp overlap
NFYC 4 datasets
Motif DE_12h DE_12h-NFYC_MA1644.2 7 bp overlap
Motif ES_0h ES_0h-NFYC_MA1644.2 7 bp overlap
ChIP Hep-G2 ENCSR569ARC.NFYC.Hep-G2 215 bp overlap
ChIP HepG2 ENCFF836FYP 182 bp overlap
OLIG2 4 datasets
ChIP brain-prefrontal-cortex_2016018 GSE129039.OLIG2.brain-prefrontal-cortex_2016018 229 bp overlap
ChIP brain-prefrontal-cortex_2017011 GSE129039.OLIG2.brain-prefrontal-cortex_2017011 229 bp overlap
ChIP brain-prefrontal-cortex_2017014 GSE129039.OLIG2.brain-prefrontal-cortex_2017014 229 bp overlap
ChIP brain-prefrontal-cortex_2017039 GSE129039.OLIG2.brain-prefrontal-cortex_2017039 229 bp overlap
PKNOX1 1 dataset
Motif DE_12h DE_12h-PKNOX1_MA0782.3 10 bp overlap
POLR2A 1 dataset
ChIP GM23338 ENCFF450WCS 229 bp overlap
PRDM10 1 dataset
ChIP HEK293 ENCFF145WQQ 50 bp overlap
Pparg::Rxra 1 dataset
Motif DE_12h DE_12h-PpargRxra_MA0065.3 13 bp overlap
RAD21 2 datasets
ChIP HUVEC-C_hypoxia GSE94872.RAD21.HUVEC-C_hypoxia 150 bp overlap
ChIP neural ENCSR198ZYJ.RAD21.neural 204 bp overlap
RAD51 1 dataset
ChIP K-562 ENCSR524BUE.RAD51.K-562 177 bp overlap
RBPJ 2 datasets
ChIP GSC8-11_12d-das GSE74557.RBPJ.GSC8-11_12d-das 139 bp overlap
ChIP GSC8-11_dasatinib GSE74557.RBPJ.GSC8-11_dasatinib 156 bp overlap
SMAD2 2 datasets
Motif DE_12h DE_12h-SMAD2_MA1964.2 6 bp overlap
Motif ES_0h ES_0h-SMAD2_MA1964.2 6 bp overlap
SP1 3 datasets
ChIP H1 ENCFF263FUH 229 bp overlap
ChIP HCT-116 ENCSR000BSF.SP1.HCT-116 147 bp overlap
ChIP HCT116 ENCFF800LBN 229 bp overlap
STAT1 1 dataset
ChIP CD14_LPS GSE43036.STAT1.CD14_LPS 133 bp overlap
TAF1 1 dataset
ChIP WA01 ENCSR000BHO.TAF1.WA01 103 bp overlap
TBP 1 dataset
ChIP hESC_10h GSE122298.TBP.hESC_10h 110 bp overlap
TFE3 2 datasets
Motif DE_12h DE_12h-TFE3_MA0831.3 10 bp overlap
Motif ES_0h ES_0h-TFE3_MA0831.3 10 bp overlap
TFEB 2 datasets
Motif DE_12h DE_12h-TFEB_MA0692.2 8 bp overlap
Motif ES_0h ES_0h-TFEB_MA0692.2 8 bp overlap
USF1 23 datasets
ChIP A-549 ENCSR000BPV.USF1.A-549 177 bp overlap
ChIP A-549 ENCSR000BHX.USF1.A-549 169 bp overlap
ChIP A-549 ENCSR000BJB.USF1.A-549 167 bp overlap
Motif DE_12h DE_12h-USF1_MA0093.4 10 bp overlap
Motif ES_0h ES_0h-USF1_MA0093.4 10 bp overlap
ChIP GM12878 ENCFF880HJL 217 bp overlap
ChIP GM12878 ENCSR000BGI.USF1.GM12878 120 bp overlap
ChIP H1 ENCFF090WVU 185 bp overlap
ChIP HCT-116 ENCSR000BVK.USF1.HCT-116 229 bp overlap
ChIP HCT116 ENCFF330PYP 187 bp overlap
ChIP Hep-G2 ENCSR000BGM.USF1.Hep-G2 182 bp overlap
ChIP HepG2 ENCFF201JKA 207 bp overlap
ChIP HepG2 ENCFF807KYJ 157 bp overlap
ChIP Ishikawa ENCFF728IEG 182 bp overlap
ChIP Ishikawa ENCSR000BSX.USF1.Ishikawa 216 bp overlap
ChIP K-562 ENCSR000BKT.USF1.K-562 177 bp overlap
ChIP K562 ENCFF202SFC 229 bp overlap
ChIP K562 ENCFF633EZB 195 bp overlap
ChIP SK-N-SH ENCFF967PDP 184 bp overlap
ChIP SK-N-SH ENCSR000BMF.USF1.SK-N-SH 220 bp overlap
ChIP SK-N-SH ENCSR000BTZ.USF1.SK-N-SH 187 bp overlap
ChIP WA01 ENCSR000BIU.USF1.WA01 227 bp overlap
ChIP WTC11 ENCFF699QGS 209 bp overlap
USF2 18 datasets
ChIP A-549 ENCSR563FBT.USF2.A-549 211 bp overlap
ChIP A549 ENCFF343KII 229 bp overlap
ChIP GM12878 GSE97661.USF2.GM12878 227 bp overlap
ChIP H1 ENCFF434EDF 164 bp overlap
ChIP HeLa-S3 ENCFF765YUZ 211 bp overlap
ChIP HeLa-S3 ENCSR000ECW.USF2.HeLa-S3 189 bp overlap
ChIP Hep-G2 ENCSR145QNL.USF2.Hep-G2 229 bp overlap
ChIP Hep-G2 GSE97661.USF2.Hep-G2 227 bp overlap
ChIP Hep-G2 ENCSR000EEF.USF2.Hep-G2 148 bp overlap
ChIP HepG2 ENCFF433IUE 229 bp overlap
ChIP HepG2 ENCFF671JRC 202 bp overlap
ChIP IMR-90 ENCFF438KUN 175 bp overlap
ChIP IMR-90 ENCSR513UQG.USF2.IMR-90 229 bp overlap
ChIP K-562 ENCSR578KEN.USF2.K-562 181 bp overlap
ChIP K562 ENCFF397QGU 227 bp overlap
ChIP SK-N-SH ENCFF736ZYW 194 bp overlap
ChIP WA01 ENCSR000ECD.USF2.WA01 187 bp overlap
ChIP WTC11 ENCFF139JAW 229 bp overlap
YY1 1 dataset
ChIP WA01 ENCSR000BKD.YY1.WA01 141 bp overlap
ZNF143 10 datasets
ChIP CUTLL1 GSE29600.ZNF143.CUTLL1 146 bp overlap
ChIP FLP143HA_T4 GSE39263.ZNF143.FLP143HA_T4 193 bp overlap
ChIP Hep-G2 ENCSR080UEM.ZNF143.Hep-G2 209 bp overlap
ChIP HepG2 ENCFF658YIR 229 bp overlap
ChIP MCF-7 GSE76454.ZNF143.MCF-7 222 bp overlap
ChIP MCF-7_E2 GSE76454.ZNF143.MCF-7_E2 229 bp overlap
ChIP WA01 ENCSR000EBW.ZNF143.WA01 142 bp overlap
ChIP WA09 GSE105028.ZNF143.WA09 178 bp overlap
ChIP WA09_heat-shock GSE105028.ZNF143.WA09_heat-shock 181 bp overlap
ChIP WTC11 ENCFF249JUK 229 bp overlap
ZNF317 1 dataset
Motif DE_12h DE_12h-ZNF317_MA1593.2 8 bp overlap
ZNF549 1 dataset
Motif DE_12h DE_12h-ZNF549_MA1728.2 8 bp overlap
Huangfu Lab · Publications · Resources · Contact