chr18 : 42,560,979 42,561,874
895 bp 66 TFs 0 linked genes
This 895 bp open chromatin element has no linked target genes and is bound by 66 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr18:42,555,979 – 42,566,874
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
66 transcription factors
Source
Cell type
BARX1 1 dataset
Motif DE_36h DE_36h-BARX1_MA0875.2 6 bp overlap
BSX 1 dataset
Motif DE_36h DE_36h-BSX_MA0876.2 6 bp overlap
CBX1 1 dataset
ChIP DKO GSE135580.CBX1.DKO 519 bp overlap
CEBPA 1 dataset
Motif DE_36h DE_36h-CEBPA_MA0102.5 10 bp overlap
CRX 3 datasets
ChIP retina_Hu20 GSE137311.CRX.retina_Hu20 296 bp overlap
ChIP retina_Hu3 GSE137311.CRX.retina_Hu3 360 bp overlap
ChIP retina_Hu6 GSE137311.CRX.retina_Hu6 400 bp overlap
CTCF 3 datasets
ChIP omental-fat-pad ENCSR225OKX.CTCF.omental-fat-pad 192 bp overlap
ChIP retina_Hu25 GSE137311.CTCF.retina_Hu25 295 bp overlap
ChIP retina_Hu6 GSE137311.CTCF.retina_Hu6 353 bp overlap
Crx 1 dataset
Motif DE_36h DE_36h-Crx_MA0467.3 6 bp overlap
DLX1 1 dataset
Motif DE_36h DE_36h-DLX1_MA0879.3 6 bp overlap
DLX6 1 dataset
Motif DE_36h DE_36h-DLX6_MA0882.2 6 bp overlap
DPRX 1 dataset
Motif DE_36h DE_36h-DPRX_MA1480.2 9 bp overlap
DUX4 1 dataset
Motif DE_36h DE_36h-DUX4_MA0468.1 11 bp overlap
DUXA 1 dataset
Motif DE_36h DE_36h-DUXA_MA0884.2 13 bp overlap
Dlx2 1 dataset
Motif DE_36h DE_36h-Dlx2_MA0885.3 8 bp overlap
Dlx3 1 dataset
Motif DE_36h DE_36h-Dlx3_MA0880.2 6 bp overlap
Dlx4 1 dataset
Motif DE_36h DE_36h-Dlx4_MA0881.2 6 bp overlap
Dlx5 1 dataset
Motif DE_36h DE_36h-Dlx5_MA1476.3 8 bp overlap
Dmbx1 1 dataset
Motif DE_36h DE_36h-Dmbx1_MA0883.2 10 bp overlap
EN2 1 dataset
Motif DE_36h DE_36h-EN2_MA0642.3 7 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 269 bp overlap
FLI1 1 dataset
ChIP A-673_1_KRAB_GFP GSE106914.FLI1.A-673_1_KRAB_GFP 264 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 267 bp overlap
ChIP DE DE-FOXA2-2 318 bp overlap
GATA3 1 dataset
ChIP Kelly GSE94822.GATA3.Kelly 166 bp overlap
GATA4 3 datasets
ChIP DE DE-GATA4-1 758 bp overlap
ChIP DE DE-GATA4-2 814 bp overlap
Motif DE_36h DE_36h-GATA4_MA0482.3 8 bp overlap
GATA5 1 dataset
Motif DE_36h DE_36h-GATA5_MA0766.3 8 bp overlap
GATA6 9 datasets
ChIP DE DE-GATA6-1 629 bp overlap
ChIP DE DE-GATA6-2 835 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 834 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 758 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 737 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 706 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 807 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 780 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 839 bp overlap
GBX1 1 dataset
Motif DE_36h DE_36h-GBX1_MA0889.2 7 bp overlap
GBX2 1 dataset
Motif DE_36h DE_36h-GBX2_MA0890.2 6 bp overlap
GSC 1 dataset
Motif DE_36h DE_36h-GSC_MA0648.2 6 bp overlap
GSC2 1 dataset
Motif DE_36h DE_36h-GSC2_MA0891.2 6 bp overlap
HAND2 1 dataset
ChIP SK-N-BE2-C GSE94822.HAND2.SK-N-BE2-C 180 bp overlap
HESX1 1 dataset
Motif DE_36h DE_36h-HESX1_MA0894.2 6 bp overlap
HOXA7 1 dataset
Motif DE_36h DE_36h-HOXA7_MA1498.3 6 bp overlap
ISL1 1 dataset
ChIP SK-N-BE2-C GSE94822.ISL1.SK-N-BE2-C 278 bp overlap
JUN 4 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 285 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 239 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 321 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 309 bp overlap
LBX1 1 dataset
Motif DE_36h DE_36h-LBX1_MA0618.2 7 bp overlap
LBX2 1 dataset
Motif DE_36h DE_36h-LBX2_MA0699.2 6 bp overlap
LHX2 2 datasets
Motif DE_36h DE_36h-LHX2_MA0700.3 6 bp overlap
ChIP retina_pigment GSE60024.LHX2.retina_pigment 271 bp overlap
LHX9 1 dataset
Motif DE_36h DE_36h-LHX9_MA0701.3 7 bp overlap
Lhx1 1 dataset
Motif DE_36h DE_36h-Lhx1_MA1518.3 10 bp overlap
MEF2D 3 datasets
ChIP retina_Hu13 GSE137311.MEF2D.retina_Hu13 295 bp overlap
ChIP retina_Hu21 GSE137311.MEF2D.retina_Hu21 217 bp overlap
ChIP retina_Hu25 GSE137311.MEF2D.retina_Hu25 309 bp overlap
MSX1 1 dataset
Motif DE_36h DE_36h-MSX1_MA0666.3 6 bp overlap
MSX2 1 dataset
Motif DE_36h DE_36h-MSX2_MA0708.3 6 bp overlap
MYCN 1 dataset
ChIP SK-N-BE2-C GSE94822.MYCN.SK-N-BE2-C 127 bp overlap
Msx3 1 dataset
Motif DE_36h DE_36h-Msx3_MA0709.2 6 bp overlap
NEUROD1 2 datasets
ChIP D283-Med GSE92582.NEUROD1.D283-Med 265 bp overlap
ChIP D283-Med_shNEUROD1-1579 GSE92582.NEUROD1.D283-Med_shNEUROD1-1579 210 bp overlap
Nobox 1 dataset
Motif DE_36h DE_36h-Nobox_MA0125.2 6 bp overlap
OTX1 1 dataset
Motif DE_36h DE_36h-OTX1_MA0711.2 6 bp overlap
OTX2 1 dataset
ChIP retina_Hu7 GSE137311.OTX2.retina_Hu7 375 bp overlap
PHOX2A 1 dataset
Motif DE_36h DE_36h-PHOX2A_MA0713.1 11 bp overlap
PHOX2B 3 datasets
ChIP CLB-Ga GSE90683.PHOX2B.CLB-Ga 283 bp overlap
Motif DE_36h DE_36h-PHOX2B_MA0681.3 12 bp overlap
ChIP SK-N-BE2-C GSE94822.PHOX2B.SK-N-BE2-C 233 bp overlap
PITX1 1 dataset
Motif DE_36h DE_36h-PITX1_MA0682.3 6 bp overlap
PITX3 1 dataset
Motif DE_36h DE_36h-PITX3_MA0714.2 6 bp overlap
POU4F2 1 dataset
ChIP HNPC_DIF GSE74814.POU4F2.HNPC_DIF 126 bp overlap
PROP1 1 dataset
Motif DE_36h DE_36h-PROP1_MA0715.1 11 bp overlap
PRRX2 1 dataset
Motif DE_36h DE_36h-PRRX2_MA0075.4 7 bp overlap
RAX 1 dataset
Motif DE_36h DE_36h-RAX_MA0718.2 6 bp overlap
RHOXF1 1 dataset
Motif DE_36h DE_36h-RHOXF1_MA0719.2 6 bp overlap
RORB 1 dataset
ChIP retina_Hu22 GSE137311.RORB.retina_Hu22 239 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 646 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 365 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 303 bp overlap
SMAD2_3 4 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 266 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 342 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 581 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 342 bp overlap
TEAD4 2 datasets
ChIP BE2C GSE84389.TEAD4.BE2C 306 bp overlap
ChIP SK-N-BE2 GSE84389.TEAD4.SK-N-BE2 306 bp overlap
VENTX 1 dataset
Motif DE_36h DE_36h-VENTX_MA0724.1 9 bp overlap
ZNF324 1 dataset
Motif DE_36h DE_36h-ZNF324_MA1977.2 14 bp overlap
ZNF496 1 dataset
ChIP HEK293T GSE78099.ZNF496.HEK293T 294 bp overlap