chr18 : 41,396,045 41,396,582
537 bp 41 TFs 0 linked genes
This 537 bp open chromatin element has no linked target genes and is bound by 41 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr18:41,391,045 – 41,401,582
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
41 transcription factors
Source
Cell type
AR 4 datasets
ChIP LNCaP-abl_DMSO GSE80238.AR.LNCaP-abl_DMSO 106 bp overlap
ChIP LNCaP_R1881 GSE69043.AR.LNCaP_R1881 216 bp overlap
ChIP LNCaP_SHGATA2_R1881 GSE69043.AR.LNCaP_SHGATA2_R1881 170 bp overlap
ChIP VCaP GSE148358.AR.VCaP 192 bp overlap
ASH2L 1 dataset
ChIP VCaP GSE60841.ASH2L.VCaP 308 bp overlap
ATF1 1 dataset
ChIP K-562 ENCSR091GVJ.ATF1.K-562 343 bp overlap
ATF2 7 datasets
ChIP GM12878 ENCFF066HPG 229 bp overlap
ChIP GM12878 ENCSR961PPA.ATF2.GM12878 282 bp overlap
ChIP HEK293 ENCSR217HTK.ATF2.HEK293 180 bp overlap
ChIP Hep-G2 ENCSR047BUZ.ATF2.Hep-G2 347 bp overlap
ChIP HepG2 ENCFF955VER 298 bp overlap
ChIP K-562 ENCSR869IUD.ATF2.K-562 248 bp overlap
ChIP K562 ENCFF139ZZG 203 bp overlap
ATF3 2 datasets
ChIP liver ENCFF375GID 417 bp overlap
ChIP liver ENCFF375GID 213 bp overlap
ATF7 7 datasets
ChIP GM12878 ENCFF037PYH 340 bp overlap
ChIP GM12878 ENCSR014YCR.ATF7.GM12878 254 bp overlap
ChIP Hep-G2 ENCSR545FXC.ATF7.Hep-G2 310 bp overlap
ChIP HepG2 ENCFF470FKK 276 bp overlap
ChIP K-562 ENCSR972ZBV.ATF7.K-562 144 bp overlap
ChIP MCF-7 ENCFF578WKB 299 bp overlap
ChIP MCF-7 ENCSR866QPZ.ATF7.MCF-7 236 bp overlap
BAF155 2 datasets
ChIP VCaP_shARID1A GSE110655.BAF155.VCaP_shARID1A 351 bp overlap
ChIP VCaP_shERG GSE110655.BAF155.VCaP_shERG 283 bp overlap
BAP1 1 dataset
ChIP NCI-H1963_shASXL3 GSE145028.BAP1.NCI-H1963_shASXL3 392 bp overlap
BRD4 2 datasets
ChIP NCI-H1963_shASXL3 GSE145028.BRD4.NCI-H1963_shASXL3 179 bp overlap
ChIP PC-3_GDC-R GSE137207.BRD4.PC-3_GDC-R 302 bp overlap
CDX2 3 datasets
ChIP LS180 GSE31939.CDX2.LS180 257 bp overlap
ChIP LS180_125 GSE31939.CDX2.LS180_125 64 bp overlap
ChIP LS180_125 GSE31939.CDX2.LS180_125 213 bp overlap
CEBPA 2 datasets
ChIP Kasumi-1_CEBPA-ER_E2 GSE102697.CEBPA.Kasumi-1_CEBPA-ER_E2 109 bp overlap
ChIP liver ERP002306.CEBPA.liver 72 bp overlap
CREB1 8 datasets
ChIP Hep-G2 ENCSR112ALD.CREB1.Hep-G2 350 bp overlap
ChIP HepG2 ENCFF792THT 296 bp overlap
ChIP LNCaP-abl_SHCTR GSE63034.CREB1.LNCaP-abl_SHCTR 268 bp overlap
ChIP LNCaP-abl_SHFOXA1 GSE63034.CREB1.LNCaP-abl_SHFOXA1 471 bp overlap
ChIP MCF-7 ENCFF341ZEM 223 bp overlap
ChIP MCF-7 ENCFF867SAS 236 bp overlap
ChIP MCF-7 ENCSR897JAS.CREB1.MCF-7 287 bp overlap
ChIP MCF-7 ENCSR620DUQ.CREB1.MCF-7 262 bp overlap
CREB5 1 dataset
ChIP LNCaP GSE137775.CREB5.LNCaP 209 bp overlap
CRX 3 datasets
ChIP retina_Hu20 GSE137311.CRX.retina_Hu20 256 bp overlap
ChIP retina_Hu3 GSE137311.CRX.retina_Hu3 404 bp overlap
ChIP retina_Hu6 GSE137311.CRX.retina_Hu6 437 bp overlap
CTCF 65 datasets
ChIP 22Rv1 ENCFF466OXN 207 bp overlap
ChIP 22Rv1 ENCSR857PBV.CTCF.22Rv1 75 bp overlap
ChIP 22Rv1_hydroxy_10nM_4h ENCSR847XGE.CTCF.22Rv1_hydroxy_10nM_4h 94 bp overlap
ChIP C4-2B ENCFF821XVN 490 bp overlap
ChIP C4-2B ENCFF821XVN 50 bp overlap
ChIP Caco-2 ENCFF753NZV 92 bp overlap
ChIP Calu3 ENCFF526MDS 85 bp overlap
ChIP GM04025_B-lymphocytes GSE111170.CTCF.GM04025_B-lymphocytes 52 bp overlap
ChIP GM04604 GSE148179.CTCF.GM04604 59 bp overlap
ChIP GM23338 ENCFF531QOI 124 bp overlap
ChIP GM23338 ENCFF531QOI 325 bp overlap
ChIP GM23338 ENCFF832KWE 145 bp overlap
ChIP HAP1 GSE94992.CTCF.HAP1 64 bp overlap
ChIP HAP1_WaplKO-33_SCC4KO GSE94992.CTCF.HAP1_WaplKO-33_SCC4KO 68 bp overlap
ChIP HFFc6 ENCFF005CJI 131 bp overlap
ChIP HT-1080 GSE135580.CTCF.HT-1080 273 bp overlap
ChIP HeLa-S3 ENCFF255ASZ 64 bp overlap
ChIP HeLa-S3_shCtrl GSE137848.CTCF.HeLa-S3_shCtrl 50 bp overlap
ChIP KARPAS422 ENCSR113REG.CTCF.KARPAS422 72 bp overlap
ChIP KMS-11 ENCFF853JKX 155 bp overlap
ChIP KMS-11 ENCFF853JKX 356 bp overlap
ChIP LNCAP ENCFF223HIG 356 bp overlap
ChIP LNCaP ENCSR315NAC.CTCF.LNCaP 98 bp overlap
ChIP LNCaP-C4-2B ENCSR460LGH.CTCF.LNCaP-C4-2B 170 bp overlap
ChIP LNCaP_hydroxy_10nM_4h ENCSR673WZL.CTCF.LNCaP_hydroxy_10nM_4h 64 bp overlap
ChIP Loucy ENCFF359TVQ 119 bp overlap
ChIP MCF 10A ENCFF988BGF 51 bp overlap
ChIP MCF-10A GSE98551.CTCF.MCF-10A 55 bp overlap
ChIP MCF-10CA1a GSE98551.CTCF.MCF-10CA1a 67 bp overlap
ChIP MCF-7 ENCFF210JUZ 97 bp overlap
ChIP MCF-7 ENCSR560BUE.CTCF.MCF-7 147 bp overlap
ChIP NCI-H929 ENCFF305JAB 154 bp overlap
ChIP NCI-H929 ENCSR634OAQ.CTCF.NCI-H929 54 bp overlap
ChIP OCI-LY1 ENCFF455ESK 81 bp overlap
ChIP OCI-Ly3 ENCSR756ZKG.CTCF.OCI-Ly3 408 bp overlap
ChIP PC-3 ENCSR359LOD.CTCF.PC-3 97 bp overlap
ChIP RWPE-2 ENCSR856JJB.CTCF.RWPE-2 107 bp overlap
ChIP RWPE2 ENCFF911IEE 96 bp overlap
ChIP SK-N-AS GSE101295.CTCF.SK-N-AS 66 bp overlap
ChIP SK-N-SH ENCFF575DMG 51 bp overlap
ChIP SK-N-SH ENCSR541AMF.CTCF.SK-N-SH 116 bp overlap
ChIP SLK_Ctrl GSE138105.CTCF.SLK_Ctrl 152 bp overlap
ChIP SU-DHL-6 ENCFF116KKR 115 bp overlap
ChIP VCaP ENCSR265ARE.CTCF.VCaP 146 bp overlap
ChIP astrocyte ENCFF042YJV 54 bp overlap
ChIP brain ENCFF685VRG 258 bp overlap
ChIP cardiac muscle cell ENCFF777TNC 208 bp overlap
ChIP cardiac-muscle ENCSR713SXF.CTCF.cardiac-muscle 61 bp overlap
ChIP endodermal cell ENCFF471YCZ 138 bp overlap
ChIP endothelial cell ENCFF663LIE 82 bp overlap
ChIP epithelial cell of esophagus ENCFF946GGT 131 bp overlap
ChIP epithelial cell of esophagus ENCFF946GGT 305 bp overlap
ChIP hepatocyte ENCSR252QYR.CTCF.hepatocyte 87 bp overlap
ChIP keratinocyte ENCFF805QIE 50 bp overlap
ChIP keratinocyte GSE154221.CTCF.keratinocyte 418 bp overlap
ChIP keratinocyte ENCSR000ALJ.CTCF.keratinocyte 54 bp overlap
ChIP lymphoblast_mut GSE155324.CTCF.lymphoblast_mut 63 bp overlap
ChIP mesothelial cell of epicardium ENCFF427RFE 164 bp overlap
ChIP nephron progenitor cell ENCFF455DMI 137 bp overlap
ChIP neural crest cell ENCFF182LWK 117 bp overlap
ChIP osteocyte ENCFF929FPD 105 bp overlap
ChIP progenitor cell of endocrine pancreas ENCFF492KHV 128 bp overlap
ChIP prostate_epithelial ENCSR196HOM.CTCF.prostate_epithelial 95 bp overlap
ChIP retina_Hu6 GSE137311.CTCF.retina_Hu6 353 bp overlap
ChIP smooth muscle cell ENCFF656FBT 119 bp overlap
E2F1 1 dataset
ChIP K-562 ENCSR720HUL.E2F1.K-562 277 bp overlap
ERG 1 dataset
ChIP VCaP_shARID1A GSE110655.ERG.VCaP_shARID1A 224 bp overlap
ESR1 1 dataset
ChIP breast-cancer_3487 GSE126004.ESR1.breast-cancer_3487 166 bp overlap
FOXA1 4 datasets
ChIP LNCaP_ETOH24H GSE58428.FOXA1.LNCaP_ETOH24H 165 bp overlap
ChIP LNCaP_VEH GSE114266.FOXA1.LNCaP_VEH 363 bp overlap
ChIP LS180 GSE140533.FOXA1.LS180 225 bp overlap
ChIP prostate_P5_T GSE130408.FOXA1.prostate_P5_T 147 bp overlap
FOXA2 6 datasets
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.FOXA2.BJ1-hTERT_FOXA2_GATA4_Coexp 255 bp overlap
ChIP CFPAC-1_HOXB8-OE GSE119930.FOXA2.CFPAC-1_HOXB8-OE 145 bp overlap
ChIP DE DE-FOXA2-1 529 bp overlap
ChIP DE DE-FOXA2-2 537 bp overlap
ChIP PC-3_GSK GSE148982.FOXA2.PC-3_GSK 78 bp overlap
ChIP PC-3_Veh GSE148982.FOXA2.PC-3_Veh 115 bp overlap
GATA2 6 datasets
ChIP LNCaP_CSFCS GSE69043.GATA2.LNCaP_CSFCS 76 bp overlap
ChIP LNCaP_CSFCS GSE69043.GATA2.LNCaP_CSFCS 231 bp overlap
ChIP SH-SY5Y ENCSR000EYB.GATA2.SH-SY5Y 191 bp overlap
ChIP SK-N-SH ENCSR706VOO.GATA2.SK-N-SH 150 bp overlap
ChIP VCaP GSE125236.GATA2.VCaP 263 bp overlap
ChIP VCaP_JQ1 GSE125236.GATA2.VCaP_JQ1 211 bp overlap
GATA4 6 datasets
ChIP DE DE-GATA4-1 453 bp overlap
ChIP DE DE-GATA4-2 494 bp overlap
ChIP Hep-G2 GSE135714.GATA4.Hep-G2 390 bp overlap
ChIP foregut GSE117136.GATA4.foregut 375 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 449 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 406 bp overlap
GATA6 14 datasets
ChIP AGS GSE51705.GATA6.AGS 352 bp overlap
ChIP Caco-2_PROLIF GSE23436.GATA6.Caco-2_PROLIF 135 bp overlap
ChIP DE DE-GATA6-1 440 bp overlap
ChIP DE DE-GATA6-2 435 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 342 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 420 bp overlap
ChIP ESO-26 GSE132680.GATA6.ESO-26 300 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 408 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 399 bp overlap
ChIP YCC-3 GSE51705.GATA6.YCC-3 138 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 375 bp overlap
ChIP foregut GSE117136.GATA6.foregut 280 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 302 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 351 bp overlap
GRHL2 1 dataset
ChIP LNCaP GSE80256.GRHL2.LNCaP 290 bp overlap
HDAC2 1 dataset
ChIP PC-3 GSE147455.HDAC2.PC-3 219 bp overlap
HOXB8 1 dataset
ChIP CFPAC-1_HOXB8-OE GSE119930.HOXB8.CFPAC-1_HOXB8-OE 157 bp overlap
JUN 2 datasets
ChIP Hep-G2 ENCSR000EEK.JUN.Hep-G2 180 bp overlap
ChIP HepG2 ENCFF401CRH 209 bp overlap
JUND 1 dataset
ChIP HepG2 ENCFF869OPW 198 bp overlap
KDM1A 1 dataset
ChIP pancreatic-progenitor_PP2-KDM1A-inh GSE104840.KDM1A.pancreatic-progenitor_PP2-KDM1A-inh 220 bp overlap
MCRS1 1 dataset
ChIP Huh-7 GSE97411.MCRS1.Huh-7 240 bp overlap
MEF2D 3 datasets
ChIP retina_Hu13 GSE137311.MEF2D.retina_Hu13 309 bp overlap
ChIP retina_Hu21 GSE137311.MEF2D.retina_Hu21 233 bp overlap
ChIP retina_Hu25 GSE137311.MEF2D.retina_Hu25 379 bp overlap
NCOR2 1 dataset
ChIP LS180 GSE39277.NCOR2.LS180 100 bp overlap
NRL 1 dataset
ChIP retina_Hu13 GSE137311.NRL.retina_Hu13 302 bp overlap
OTX2 1 dataset
ChIP retina_Hu7 GSE137311.OTX2.retina_Hu7 424 bp overlap
RELA 1 dataset
ChIP Detroit-562_TNFa GSE91018.RELA.Detroit-562_TNFa 173 bp overlap
RORB 1 dataset
ChIP retina_Hu22 GSE137311.RORB.retina_Hu22 350 bp overlap
RXR 1 dataset
ChIP LS180_125 GSE31939.RXR.LS180_125 61 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 310 bp overlap
SMC3 1 dataset
ChIP GP5D GSE51234.SMC3.GP5D 227 bp overlap