chr1 : 224,175,702 – 224,175,939
237 bp 45 TFs 2 linked genes
This 237 bp open chromatin element is linked to ENSG00000236773 and DEGS1 and is bound by 45 transcription factors.
Linked Genes
2 genes
Distance
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
ENSG00000236773 at TSS At TSS Proximity
DEGS1 7.3 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:224,170,702 – 224,180,939
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
45 transcription factors
Source
Cell type
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 237 bp overlap
BCOR 2 datasets
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 237 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 234 bp overlap
BRD2 6 datasets
ChIP HCC1806_BAZ2BsiRNA GSE116879.BRD2.HCC1806_BAZ2BsiRNA 223 bp overlap
ChIP HCC1806_NTsiRNA GSE116879.BRD2.HCC1806_NTsiRNA 226 bp overlap
ChIP THP-1_DMSO GSE138084.BRD2.THP-1_DMSO 237 bp overlap
ChIP THP-1_iBET GSE138084.BRD2.THP-1_iBET 212 bp overlap
ChIP THP-1_iBET-BD1 GSE138084.BRD2.THP-1_iBET-BD1 237 bp overlap
ChIP THP-1_iBET-BD2 GSE138084.BRD2.THP-1_iBET-BD2 237 bp overlap
BRD4 4 datasets
ChIP THP-1_DMSO GSE138084.BRD4.THP-1_DMSO 214 bp overlap
ChIP THP-1_DMSO-PMA GSE138084.BRD4.THP-1_DMSO-PMA 98 bp overlap
ChIP THP-1_iBET-BD2 GSE138084.BRD4.THP-1_iBET-BD2 237 bp overlap
ChIP thyroid-cancer GSE114068.BRD4.thyroid-cancer 107 bp overlap
CBFB 1 dataset
ChIP ME-1 GSE46044.CBFB.ME-1 204 bp overlap
CREB1 1 dataset
ChIP WA01 ENCSR000BSN.CREB1.WA01 159 bp overlap
CTCF 35 datasets
ChIP AG04449 ENCFF248MBD 145 bp overlap
ChIP GM23338 ENCFF772DML 181 bp overlap
ChIP H1 ENCFF764RHO 203 bp overlap
ChIP HepG2 ENCFF757EKU 215 bp overlap
ChIP IMR-90 ENCFF887MRH 176 bp overlap
ChIP Kelly_sensitive GSE103030.CTCF.Kelly_sensitive 213 bp overlap
ChIP OVCAR-8 GSE70764.CTCF.OVCAR-8 185 bp overlap
ChIP THP-1_Pam3csk-045m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-045m-Flavo-000m 116 bp overlap
ChIP THP-1_siCtrl-eGFP-Pam3csk-0h GSE103477.CTCF.THP-1_siCtrl-eGFP-Pam3csk-0h 175 bp overlap
ChIP WA01_NEUR GSE52457.CTCF.WA01_NEUR 139 bp overlap
ChIP astrocyte of the cerebellum ENCFF511OCS 237 bp overlap
ChIP astrocyte of the spinal cord ENCFF213GKL 179 bp overlap
ChIP brain microvascular endothelial cell ENCFF526VHE 208 bp overlap
ChIP cardiac fibroblast ENCFF326EDY 161 bp overlap
ChIP choroid plexus epithelial cell ENCFF407YNR 190 bp overlap
ChIP endodermal cell ENCFF471YCZ 237 bp overlap
ChIP endothelial_brain-microvascular ENCSR000DTA.CTCF.endothelial_brain-microvascular 183 bp overlap
ChIP epithelial cell of prostate ENCFF086GTI 237 bp overlap
ChIP epithelial_kidney ENCSR000DVH.CTCF.epithelial_kidney 141 bp overlap
ChIP fibroblast of lung ENCFF505HVQ 165 bp overlap
ChIP foreskin keratinocyte ENCFF980OWR 190 bp overlap
ChIP gastroesophageal sphincter ENCFF607YRA 237 bp overlap
ChIP gastroesophageal-sphincter ENCSR298ZPF.CTCF.gastroesophageal-sphincter 223 bp overlap
ChIP heart left ventricle ENCFF548XHH 237 bp overlap
ChIP heart right ventricle ENCFF435TKW 237 bp overlap
ChIP heart right ventricle ENCFF577TID 237 bp overlap
ChIP hepatocyte ENCFF263BLJ 200 bp overlap
ChIP keratinocyte ENCFF291YDC 178 bp overlap
ChIP keratinocyte GSE154221.CTCF.keratinocyte 237 bp overlap
ChIP keratinocyte ENCSR000DNC.CTCF.keratinocyte 100 bp overlap
ChIP kidney epithelial cell ENCFF173LWY 210 bp overlap
ChIP neuron_bipolar_doxy_4d ENCSR619IUE.CTCF.neuron_bipolar_doxy_4d 197 bp overlap
ChIP primary-glioblastoma_G523 GSE121601.CTCF.primary-glioblastoma_G523 133 bp overlap
ChIP prostate_epithelial ENCSR196HOM.CTCF.prostate_epithelial 237 bp overlap
ChIP right atrium auricular region ENCFF696NTN 237 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF274GAT 193 bp overlap
EGR1 1 dataset
ChIP Hep-G2 ENCSR026GSW.EGR1.Hep-G2 185 bp overlap
ERF::FOXO1 1 dataset
Motif DE_24h DE_24h-ERFFOXO1_MA1936.2 12 bp overlap
ERG 3 datasets
ChIP MCF-7 GSE23730.ERG.MCF-7 237 bp overlap
ChIP ME-1 GSE46044.ERG.ME-1 207 bp overlap
ChIP TSU-1621MT GSE60477.ERG.TSU-1621MT 236 bp overlap
ETV2::FIGLA 1 dataset
Motif DE_24h DE_24h-ETV2FIGLA_MA1941.2 13 bp overlap
ETV5::FIGLA 1 dataset
Motif DE_24h DE_24h-ETV5FIGLA_MA1945.2 14 bp overlap
ETV5::FOXI1 1 dataset
Motif DE_24h DE_24h-ETV5FOXI1_MA1946.2 12 bp overlap
ETV5::FOXO1 1 dataset
Motif DE_24h DE_24h-ETV5FOXO1_MA1947.2 10 bp overlap
FLI1 1 dataset
ChIP TSU-1621MT GSE60477.FLI1.TSU-1621MT 216 bp overlap
FLI1::FOXI1 1 dataset
Motif DE_24h DE_24h-FLI1FOXI1_MA1950.2 11 bp overlap
GATA2 1 dataset
ChIP ME-1_CBFB-MYH11-KD GSE117138.GATA2.ME-1_CBFB-MYH11-KD 230 bp overlap
KLF3 1 dataset
Motif DE_24h DE_24h-KLF3_MA1516.2 10 bp overlap
MAX 2 datasets
ChIP H1 ENCFF914VQY 237 bp overlap
ChIP MCF-7 ENCSR000BUL.MAX.MCF-7 140 bp overlap
MAZ 1 dataset
Motif DE_24h DE_24h-MAZ_MA1522.2 8 bp overlap
MTF1 1 dataset
Motif DE_24h DE_24h-MTF1_MA0863.1 14 bp overlap
MYCN 1 dataset
ChIP LA-N-5 GSE138295.MYCN.LA-N-5 188 bp overlap
OGG1 2 datasets
ChIP HEK293 GSE89017.OGG1.HEK293 237 bp overlap
ChIP HEK293_60_min GSE89017.OGG1.HEK293_60_min 237 bp overlap
POLR2A 1 dataset
ChIP spleen ENCFF706IUS 237 bp overlap
POU5F1 3 datasets
ChIP BG03 GSE21614.POU5F1.BG03 150 bp overlap
ChIP DE_D1 DED1-OCT4_Batch_II 237 bp overlap
ChIP WA01_3IL ERP004238.POU5F1.WA01_3IL 224 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 153 bp overlap
PRDM1 1 dataset
ChIP HEK293 ENCFF302TBP 235 bp overlap
RAD21 3 datasets
ChIP H1 ENCFF698EWO 200 bp overlap
ChIP H1 ENCFF967OJF 213 bp overlap
ChIP HepG2 ENCFF360ZSW 166 bp overlap
RORC 1 dataset
ChIP HCC70_XY018 GSE126380.RORC.HCC70_XY018 223 bp overlap
SMARCC1 1 dataset
ChIP hiPSC GSE124903.SMARCC1.hiPSC 158 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 237 bp overlap
SREBP2 2 datasets
ChIP HCC70 GSE126380.SREBP2.HCC70 237 bp overlap
ChIP HCC70_XY018 GSE126380.SREBP2.HCC70_XY018 234 bp overlap
STAT1_pS727 1 dataset
ChIP SET-2 GSE100566.STAT1_pS727.SET-2 236 bp overlap
TFAP4::ETV1 1 dataset
Motif DE_24h DE_24h-TFAP4ETV1_MA1966.2 13 bp overlap
Wt1 1 dataset
Motif DE_24h DE_24h-Wt1_MA1627.2 10 bp overlap
ZBTB11 2 datasets
ChIP HEK293 ENCFF262GZJ 237 bp overlap
ChIP HEK293 ENCSR882ZTS.ZBTB11.HEK293 129 bp overlap
ZBTB33 4 datasets
ChIP K-562 ENCSR876GXA.ZBTB33.K-562 237 bp overlap
ChIP K562 ENCFF427SDV 237 bp overlap
ChIP K562 ENCFF427SDV 121 bp overlap
ChIP K562 ENCFF875HLX 176 bp overlap
ZNF263 1 dataset
ChIP Hep-G2 ENCSR313MMD.ZNF263.Hep-G2 129 bp overlap
ZNF454 1 dataset
Motif DE_24h DE_24h-ZNF454_MA1712.2 17 bp overlap
ZNF687 1 dataset
ChIP HepG2 ENCFF653WIX 237 bp overlap
ZNF750 1 dataset
ChIP keratinocyte_diff GSE57702.ZNF750.keratinocyte_diff 158 bp overlap
ZNF768 1 dataset
ChIP HepG2 ENCFF388QCK 226 bp overlap
ZNF770 2 datasets
ChIP HEK293 ENCFF468FCG 153 bp overlap
ChIP HEK293 ENCSR242BGR.ZNF770.HEK293 121 bp overlap
Zfx 1 dataset
Motif DE_24h DE_24h-Zfx_MA0146.3 10 bp overlap
Huangfu Lab · Publications · Resources · Contact