chr13 : 110,360,447 110,361,003
556 bp 47 TFs 0 linked genes
This 556 bp open chromatin element has no linked target genes and is bound by 47 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr13:110,355,447 – 110,366,003
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
47 transcription factors
Source
Cell type
AHR 1 dataset
ChIP MCF-7_TCDD_45min GSE90550.AHR.MCF-7_TCDD_45min 250 bp overlap
ARID1A 2 datasets
ChIP MCF-7_4-hydroxytamoxifen GSE123284.ARID1A.MCF-7_4-hydroxytamoxifen 339 bp overlap
ChIP MCF-7_Fulvestrant GSE123284.ARID1A.MCF-7_Fulvestrant 53 bp overlap
BRD4 1 dataset
ChIP Kelly_sensitive GSE103030.BRD4.Kelly_sensitive 203 bp overlap
CDK8 2 datasets
ChIP leiomyoma_PT886 GSE128230.CDK8.leiomyoma_PT886 155 bp overlap
ChIP leiomyoma_PT886 GSE128230.CDK8.leiomyoma_PT886 238 bp overlap
CRX 3 datasets
ChIP retina_Hu20 GSE137311.CRX.retina_Hu20 309 bp overlap
ChIP retina_Hu3 GSE137311.CRX.retina_Hu3 411 bp overlap
ChIP retina_Hu6 GSE137311.CRX.retina_Hu6 431 bp overlap
CTCF 1 dataset
ChIP retina_Hu6 GSE137311.CTCF.retina_Hu6 439 bp overlap
ESR1 15 datasets
ChIP Ishikawa_DMSO_D538G_clone3 GSE132426.ESR1.Ishikawa_DMSO_D538G_clone3 290 bp overlap
ChIP Ishikawa_siNTC-96h GSE129803.ESR1.Ishikawa_siNTC-96h 218 bp overlap
ChIP MCF-7_E2-20min-ERalpha GSE94023.ESR1.MCF-7_E2-20min-ERalpha 52 bp overlap
ChIP MCF-7_E2-80min-ERalpha GSE94023.ESR1.MCF-7_E2-80min-ERalpha 59 bp overlap
ChIP MCF-7_estradiol-DHT_4h GSE99626.ESR1.MCF-7_estradiol-DHT_4h 176 bp overlap
ChIP MCF-7_estradiol_4h GSE99626.ESR1.MCF-7_estradiol_4h 240 bp overlap
ChIP MCF-7_jc5850 GSE126004.ESR1.MCF-7_jc5850 75 bp overlap
ChIP MCF-7_jc5852 GSE126004.ESR1.MCF-7_jc5852 176 bp overlap
ChIP MCF-7_jc5853 GSE126004.ESR1.MCF-7_jc5853 153 bp overlap
ChIP MCF-7_jc5854 GSE126004.ESR1.MCF-7_jc5854 71 bp overlap
ChIP MCF-7_jc5855 GSE126004.ESR1.MCF-7_jc5855 119 bp overlap
ChIP MCF-7_jc5856 GSE126004.ESR1.MCF-7_jc5856 295 bp overlap
ChIP MDA-MB-134-VI_E2 GSE109103.ESR1.MDA-MB-134-VI_E2 231 bp overlap
ChIP SUM44PE_ESR1_wildtype GSE100074.ESR1.SUM44PE_ESR1_wildtype 54 bp overlap
ChIP T-47D_D538G_E2 GSE148277.ESR1.T-47D_D538G_E2 162 bp overlap
ESR1_Y537C 1 dataset
ChIP SUM44PE__ESR1_mutant_LTED GSE100074.ESR1_Y537C.SUM44PE__ESR1_mutant_LTED 62 bp overlap
FOS 1 dataset
ChIP IMR-90 ENCFF179EDA 70 bp overlap
FOXA1 25 datasets
ChIP MCF-7 GSE72249.FOXA1.MCF-7 78 bp overlap
ChIP MCF-7_DEX GSE72249.FOXA1.MCF-7_DEX 109 bp overlap
ChIP MCF-7_E2 GSE72249.FOXA1.MCF-7_E2 89 bp overlap
ChIP MCF-7_E2 GSE60270.FOXA1.MCF-7_E2 50 bp overlap
ChIP MCF-7_E2_TNF GSE59530.FOXA1.MCF-7_E2_TNF 89 bp overlap
ChIP MCF-7_JC4691 GSE126004.FOXA1.MCF-7_JC4691 101 bp overlap
ChIP MCF-7_JC4692 GSE126004.FOXA1.MCF-7_JC4692 61 bp overlap
ChIP MCF-7_JC4693 GSE126004.FOXA1.MCF-7_JC4693 115 bp overlap
ChIP MCF-7_JC4694 GSE126004.FOXA1.MCF-7_JC4694 61 bp overlap
ChIP MCF-7_JC4697 GSE126004.FOXA1.MCF-7_JC4697 57 bp overlap
ChIP MCF-7_TAMR_E2_TAM ERP000380.FOXA1.MCF-7_TAMR_E2_TAM 85 bp overlap
ChIP MCF-7_TNF GSE59530.FOXA1.MCF-7_TNF 108 bp overlap
ChIP MCF-7_estrogen_ab1 GSE112969.FOXA1.MCF-7_estrogen_ab1 171 bp overlap
ChIP MCF-7_estrogen_ab2 GSE112969.FOXA1.MCF-7_estrogen_ab2 197 bp overlap
ChIP MCF-7_vehicle_ab1 GSE112969.FOXA1.MCF-7_vehicle_ab1 106 bp overlap
ChIP MCF-7_vehicle_ab2 GSE112969.FOXA1.MCF-7_vehicle_ab2 125 bp overlap
ChIP T-47D_JC4743 GSE126004.FOXA1.T-47D_JC4743 74 bp overlap
ChIP T-47D_JC4744 GSE126004.FOXA1.T-47D_JC4744 90 bp overlap
ChIP T-47D_JC4747 GSE126004.FOXA1.T-47D_JC4747 85 bp overlap
ChIP T-47D_JC4748 GSE126004.FOXA1.T-47D_JC4748 109 bp overlap
ChIP ZR-75-1_estrogen_ab2 GSE112969.FOXA1.ZR-75-1_estrogen_ab2 61 bp overlap
ChIP ZR-75-1_vehicle_ab2 GSE112969.FOXA1.ZR-75-1_vehicle_ab2 69 bp overlap
ChIP ZR751_DEX GSE72249.FOXA1.ZR751_DEX 83 bp overlap
ChIP ZR751_E2 GSE72249.FOXA1.ZR751_E2 60 bp overlap
ChIP breast_tumor_Male_13 GSE104399.FOXA1.breast_tumor_Male_13 317 bp overlap
FOXA2 1 dataset
ChIP DE DE-FOXA2-1 372 bp overlap
FOXL2 3 datasets
ChIP HGrC1_C134W-TGF GSE138496.FOXL2.HGrC1_C134W-TGF 197 bp overlap
ChIP HGrC1_C134W-TGF_parental GSE138496.FOXL2.HGrC1_C134W-TGF_parental 148 bp overlap
ChIP KGN_1513 GSE138496.FOXL2.KGN_1513 78 bp overlap
GATA3 1 dataset
ChIP MCF-7 GSE122847.GATA3.MCF-7 77 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 514 bp overlap
ChIP DE DE-GATA4-2 546 bp overlap
GATA6 9 datasets
ChIP DE DE-GATA6-1 439 bp overlap
ChIP DE DE-GATA6-2 540 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 514 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 533 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 472 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 470 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 556 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 543 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 352 bp overlap
HAND2 1 dataset
ChIP SK-N-BE2-C GSE94822.HAND2.SK-N-BE2-C 172 bp overlap
JUN 1 dataset
ChIP leiomyoma_PT886 GSE128230.JUN.leiomyoma_PT886 69 bp overlap
MED1 2 datasets
ChIP cardiomyocyte_5 GSE85628.MED1.cardiomyocyte_5 168 bp overlap
ChIP cardiomyocyte_5 GSE85628.MED1.cardiomyocyte_5 329 bp overlap
MED12 1 dataset
ChIP leiomyoma_PT886 GSE128230.MED12.leiomyoma_PT886 57 bp overlap
MEF2D 2 datasets
ChIP retina_Hu13 GSE137311.MEF2D.retina_Hu13 229 bp overlap
ChIP retina_Hu25 GSE137311.MEF2D.retina_Hu25 240 bp overlap
MLLT1 1 dataset
ChIP GM12878 ENCSR552XSN.MLLT1.GM12878 525 bp overlap
MYCN 2 datasets
ChIP IMR-5_CD532 GSE78957.MYCN.IMR-5_CD532 83 bp overlap
ChIP Kelly_sensitive GSE115249.MYCN.Kelly_sensitive 154 bp overlap
NCAPH2 1 dataset
ChIP IMR-90_FLAG_OIS GSE118494.NCAPH2.IMR-90_FLAG_OIS 255 bp overlap
NEUROD1 3 datasets
ChIP D283-Med GSE92582.NEUROD1.D283-Med 354 bp overlap
ChIP D283-Med_shNEUROD1-1579 GSE92582.NEUROD1.D283-Med_shNEUROD1-1579 252 bp overlap
ChIP D341-Med_shNEUROD1-1579 GSE92582.NEUROD1.D341-Med_shNEUROD1-1579 151 bp overlap
NR3C1 2 datasets
ChIP BEAS-2B_TNF_IA1 GSE125623.NR3C1.BEAS-2B_TNF_IA1 264 bp overlap
ChIP BEAS-2B_shNR3C1_TNF_IA1 GSE125623.NR3C1.BEAS-2B_shNR3C1_TNF_IA1 125 bp overlap
OTX2 1 dataset
ChIP retina_Hu7 GSE137311.OTX2.retina_Hu7 405 bp overlap
OVOL1 1 dataset
ChIP MCF-7 ENCFF537GWI 113 bp overlap
PHIP 1 dataset
ChIP HEK293_ab833 GSE101646.PHIP.HEK293_ab833 511 bp overlap
POLR2A 2 datasets
ChIP IMR-90 ENCFF672YWV 556 bp overlap
ChIP sigmoid colon ENCFF754JQR 275 bp overlap
RELA 2 datasets
ChIP FaDu_LPS GSE132018.RELA.FaDu_LPS 286 bp overlap
ChIP IMR-90_TNF GSE43070.RELA.IMR-90_TNF 71 bp overlap
RORB 1 dataset
ChIP retina_Hu22 GSE137311.RORB.retina_Hu22 208 bp overlap
SMAD2-3 4 datasets
ChIP HGrC1_C134W-TGF GSE138496.SMAD2-3.HGrC1_C134W-TGF 132 bp overlap
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 436 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 525 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 501 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 473 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 477 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 376 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 358 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 463 bp overlap
SMARCA4 1 dataset
ChIP NPC_K755R-siAP GSE122631.SMARCA4.NPC_K755R-siAP 61 bp overlap
SMARCB1 1 dataset
ChIP MCF-7_estrogen GSE123284.SMARCB1.MCF-7_estrogen 359 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 339 bp overlap
SSRP1 1 dataset
ChIP hiF-T GSE98758.SSRP1.hiF-T 309 bp overlap
STAT3 1 dataset
ChIP MCF-7_jc5840 GSE126004.STAT3.MCF-7_jc5840 64 bp overlap
TFAP2C 2 datasets
ChIP MCF-7_E2 GSE23852.TFAP2C.MCF-7_E2 61 bp overlap
ChIP MCF-7_ETOH GSE23852.TFAP2C.MCF-7_ETOH 71 bp overlap
ZNF143 1 dataset
ChIP MCF-7 GSE76454.ZNF143.MCF-7 220 bp overlap
ZNF335 1 dataset
ChIP HEK293 ENCFF784SLD 61 bp overlap
ZNF600 1 dataset
ChIP HEK293 ENCFF785JSX 177 bp overlap
ZSCAN5C 2 datasets
ChIP HEK293 ENCFF343DTU 206 bp overlap
ChIP HEK293 ENCSR731AGO.ZSCAN5C.HEK293 181 bp overlap