chr13:100,591,344–100,592,134

chr13 : 100,591,344 – 100,592,134

790 bp 51 TFs 5 linked genes

This 790 bp open chromatin element is linked to 5 target genes and is bound by 51 transcription factors.

Linked Genes

5 genes

Gene	Expression	Dist. to TSS	Distance	Link type
GGACT		2.6 kb	Proximal	Proximity
TMTC4		83.0 kb	Distal	Multiome
ZIC5		620.0 kb	Distal	Multiome+HiCAR
ENSG00000286757		635.9 kb	Distal	Multiome+HiCAR
CLYBL		985.1 kb	Distal	Multiome+HiCAR

Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

51 transcription factors

Motif DE_36h DE_36h-ATF4_MA0833.3 10 bp overlap

Ahr::Arnt 2 datasets

Motif DE_36h DE_36h-AhrArnt_MA0006.2 5 bp overlap

Motif DE_60h DE_60h-AhrArnt_MA0006.2 5 bp overlap

CBFA2T3 1 dataset

ChIP K-562 ENCSR697YLJ.CBFA2T3.K-562 226 bp overlap

CEBPG 1 dataset

Motif DE_36h DE_36h-CEBPG_MA1636.2 10 bp overlap

Cebpa 1 dataset

ChIP BLaER1 ENCFF896HSY 163 bp overlap

Motif DE_36h DE_36h-Crx_MA0467.3 6 bp overlap

Motif DE_60h DE_60h-Crx_MA0467.3 6 bp overlap

Motif DE_36h DE_36h-DUX4_MA0468.1 11 bp overlap

Motif DE_36h DE_36h-DUXA_MA0884.2 13 bp overlap

Motif DE_36h DE_36h-Dux_MA0611.3 11 bp overlap

Motif DE_36h DE_36h-E2F6_MA0471.3 8 bp overlap

EOMES 1 dataset

ChIP hESC GSE26097.EOMES.hESC 292 bp overlap

ETV5::DRGX 1 dataset

Motif DE_36h DE_36h-ETV5DRGX_MA1944.2 12 bp overlap

FIGLA 2 datasets

Motif DE_36h DE_36h-FIGLA_MA0820.2 6 bp overlap

Motif DE_60h DE_60h-FIGLA_MA0820.2 6 bp overlap

Motif DE_36h DE_36h-FOS_MA0476.2 8 bp overlap

FOSL1::JUND 1 dataset

Motif DE_36h DE_36h-FOSL1JUND_MA1142.2 8 bp overlap

FOXA1 1 dataset

ChIP breast-cancer_ENOB-2848 GSE128018.FOXA1.breast-cancer_ENOB-2848 162 bp overlap

FOXA2 2 datasets

ChIP DE DE-FOXA2-1 614 bp overlap

ChIP DE DE-FOXA2-2 546 bp overlap

GATA1::TAL1 1 dataset

Motif DE_36h DE_36h-GATA1TAL1_MA0140.3 17 bp overlap

GATA4 3 datasets

ChIP DE DE-GATA4-1 536 bp overlap

ChIP DE DE-GATA4-2 578 bp overlap

ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 396 bp overlap

GATA6 9 datasets

ChIP DE DE-GATA6-1 526 bp overlap

ChIP DE DE-GATA6-2 559 bp overlap

ChIP DE_D1 S14-DE-d1-GATA6-exp1 391 bp overlap

ChIP DE_D1 S41-DE-d1-GATA6-exp2 363 bp overlap

ChIP DE_D2 S55-DE-d2-GATA6-exp2 599 bp overlap

ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 455 bp overlap

ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 290 bp overlap

ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 282 bp overlap

ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 262 bp overlap

Motif DE_36h DE_36h-GFI1_MA0038.3 11 bp overlap

Motif DE_36h DE_36h-GSC_MA0648.2 6 bp overlap

Motif DE_60h DE_60h-GSC_MA0648.2 6 bp overlap

GSC2 2 datasets

Motif DE_36h DE_36h-GSC2_MA0891.2 6 bp overlap

Motif DE_60h DE_60h-GSC2_MA0891.2 6 bp overlap

HDAC2 1 dataset

ChIP K-562 ENCSR893WSB.HDAC2.K-562 253 bp overlap

INSM1 1 dataset

Motif DE_36h DE_36h-INSM1_MA0155.1 12 bp overlap

Motif DE_36h DE_36h-Jun_MA0489.3 8 bp overlap

KLF17 1 dataset

Motif DE_36h DE_36h-KLF17_MA1514.2 14 bp overlap

MEIS1 2 datasets

Motif DE_36h DE_36h-MEIS1_MA0498.3 5 bp overlap

Motif DE_60h DE_60h-MEIS1_MA0498.3 5 bp overlap

OTX1 2 datasets

Motif DE_36h DE_36h-OTX1_MA0711.2 6 bp overlap

Motif DE_60h DE_60h-OTX1_MA0711.2 6 bp overlap

OTX2 2 datasets

Motif DE_36h DE_36h-OTX2_MA0712.3 7 bp overlap

Motif DE_60h DE_60h-OTX2_MA0712.3 7 bp overlap

PHOX2A 1 dataset

Motif DE_36h DE_36h-PHOX2A_MA0713.1 11 bp overlap

PITX1 2 datasets

Motif DE_36h DE_36h-PITX1_MA0682.3 6 bp overlap

Motif DE_60h DE_60h-PITX1_MA0682.3 6 bp overlap

PITX3 2 datasets

Motif DE_36h DE_36h-PITX3_MA0714.2 6 bp overlap

Motif DE_60h DE_60h-PITX3_MA0714.2 6 bp overlap

POU2F3 1 dataset

ChIP NCI-H1048 GSE115123.POU2F3.NCI-H1048 221 bp overlap

PPARG 1 dataset

Motif DE_36h DE_36h-PPARG_MA0066.2 19 bp overlap

Motif DE_36h DE_36h-RBPJ_MA1116.2 6 bp overlap

RHOXF1 2 datasets

Motif DE_36h DE_36h-RHOXF1_MA0719.2 6 bp overlap

Motif DE_60h DE_60h-RHOXF1_MA0719.2 6 bp overlap

SMAD2-3 1 dataset

ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 460 bp overlap

SOX17 1 dataset

ChIP DE_D2 DED2-SOX17_Batch_II 273 bp overlap

SOX17_M 1 dataset

ChIP DE_D2 DED2-SOX17-M_Batch_II 269 bp overlap

ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 254 bp overlap

THRA 2 datasets

Motif DE_36h DE_36h-THRA_MA1969.2 18 bp overlap

Motif DE_60h DE_60h-THRA_MA1969.2 18 bp overlap

ZBTB33 1 dataset

ChIP HepG2 ENCFF339WCT 257 bp overlap

ZEB1 2 datasets

Motif DE_36h DE_36h-ZEB1_MA0103.4 6 bp overlap

Motif DE_60h DE_60h-ZEB1_MA0103.4 6 bp overlap

ZKSCAN5 1 dataset

Motif DE_36h DE_36h-ZKSCAN5_MA1652.2 9 bp overlap

ZNF143 1 dataset

Motif DE_36h DE_36h-ZNF143_MA0088.2 16 bp overlap

ZNF264 1 dataset

ChIP HEK293 GSE76494.ZNF264.HEK293 208 bp overlap

ZNF341 2 datasets

ChIP HEK293 ENCFF944VMC 195 bp overlap

ChIP HEK293 ENCSR185FOY.ZNF341.HEK293 417 bp overlap

ZNF530 2 datasets

Motif DE_36h DE_36h-ZNF530_MA1981.2 14 bp overlap

Motif DE_60h DE_60h-ZNF530_MA1981.2 14 bp overlap

ZNF75D 1 dataset

Motif DE_36h DE_36h-ZNF75D_MA1601.2 12 bp overlap

ZNF76 1 dataset

Motif DE_36h DE_36h-ZNF76_MA1716.2 17 bp overlap