chr13 : 90,395,771 – 90,396,935

1,164 bp 66 TFs 0 linked genes

This 1.2 kb open chromatin element has no linked target genes and is bound by 66 transcription factors.

Linked Genes

No linked genes

Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

66 transcription factors

ATF3 1 dataset

ChIP K562 ENCFF921JQW 90 bp overlap

Arid3a 1 dataset

Motif DE_60h DE_60h-Arid3a_MA0151.1 6 bp overlap

BRD9 2 datasets

ChIP G-401 GSE120234.BRD9.G-401 161 bp overlap

ChIP G-401 GSE120234.BRD9.G-401 210 bp overlap

CEBPG 1 dataset

ChIP K562 ENCFF783ADE 86 bp overlap

Dux 1 dataset

Motif DE_60h DE_60h-Dux_MA0611.3 11 bp overlap

E2F7 1 dataset

Motif DE_60h DE_60h-E2F7_MA0758.1 14 bp overlap

EHF 1 dataset

Motif DE_60h DE_60h-EHF_MA0598.4 9 bp overlap

ELF3 1 dataset

Motif DE_60h DE_60h-ELF3_MA0640.3 9 bp overlap

EOMES 1 dataset

ChIP hESC GSE26097.EOMES.hESC 141 bp overlap

ETV2 1 dataset

Motif DE_60h DE_60h-ETV2_MA0762.2 9 bp overlap

ETV7 1 dataset

Motif DE_60h DE_60h-ETV7_MA1708.2 9 bp overlap

Erg 1 dataset

Motif DE_60h DE_60h-Erg_MA0474.4 10 bp overlap

FIGLA 1 dataset

Motif DE_60h DE_60h-FIGLA_MA0820.2 6 bp overlap

FOXA2 2 datasets

ChIP DE DE-FOXA2-1 928 bp overlap

ChIP DE DE-FOXA2-2 982 bp overlap

Foxq1 3 datasets

Motif DE_60h DE_60h-Foxq1_MA0040.2 10 bp overlap

Motif DE_72h DE_72h-Foxq1_MA0040.2 10 bp overlap

GABPA 1 dataset

Motif DE_60h DE_60h-GABPA_MA0062.4 10 bp overlap

GATA3 1 dataset

ChIP T-47D ENCSR000BMX.GATA3.T-47D 184 bp overlap

GATA4 2 datasets

ChIP DE DE-GATA4-1 878 bp overlap

ChIP DE DE-GATA4-2 1039 bp overlap

GATA6 8 datasets

ChIP DE DE-GATA6-1 293 bp overlap

ChIP DE DE-GATA6-1 372 bp overlap

ChIP DE DE-GATA6-2 902 bp overlap

ChIP DE_D1 S09-DE-d1-GATA6-exp1 295 bp overlap

ChIP DE_D1 S14-DE-d1-GATA6-exp1 381 bp overlap

ChIP DE_D1 S41-DE-d1-GATA6-exp2 415 bp overlap

ChIP DE_D2 S55-DE-d2-GATA6-exp2 302 bp overlap

ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 290 bp overlap

HOXB13 1 dataset

ChIP G-401 GSE65381.HOXB13.G-401 1164 bp overlap

HOXB4 1 dataset

Motif DE_60h DE_60h-HOXB4_MA1499.2 6 bp overlap

HOXB9 1 dataset

Motif DE_60h DE_60h-HOXB9_MA1503.2 9 bp overlap

HOXC10 1 dataset

Motif DE_60h DE_60h-HOXC10_MA0905.2 9 bp overlap

HOXC13 3 datasets

Motif DE_60h DE_60h-HOXC13_MA0907.2 9 bp overlap

Motif DE_72h DE_72h-HOXC13_MA0907.2 9 bp overlap

HOXC4 1 dataset

Motif DE_60h DE_60h-HOXC4_MA1504.2 6 bp overlap

HOXD12 1 dataset

Motif DE_60h DE_60h-HOXD12_MA0873.2 10 bp overlap

HOXD4 1 dataset

Motif DE_60h DE_60h-HOXD4_MA1507.2 6 bp overlap

Hoxa11 1 dataset

Motif DE_60h DE_60h-Hoxa11_MA0911.2 9 bp overlap

JUN 1 dataset

ChIP DE_D2 S02-DE-d2-JUN-exp1 467 bp overlap

Lhx3 1 dataset

Motif DE_60h DE_60h-Lhx3_MA0135.2 12 bp overlap

MEIS1 1 dataset

Motif DE_60h DE_60h-MEIS1_MA0498.3 5 bp overlap

NANOG 2 datasets

ChIP HUES-8 GSE109524.NANOG.HUES-8 341 bp overlap

ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 368 bp overlap

NEUROD1 1 dataset

ChIP D283-Med_shNEUROD1-1579 GSE92582.NEUROD1.D283-Med_shNEUROD1-1579 158 bp overlap

NKX6-1 1 dataset

Motif DE_60h DE_60h-NKX6-1_MA0674.2 7 bp overlap

NKX6-3 1 dataset

Motif DE_60h DE_60h-NKX6-3_MA1530.2 8 bp overlap

NR1I3 2 datasets

Motif DE_60h DE_60h-NR1I3_MA1534.2 8 bp overlap

Motif DE_72h DE_72h-NR1I3_MA1534.2 8 bp overlap

Nr2e3 1 dataset

Motif DE_60h DE_60h-Nr2e3_MA0164.2 6 bp overlap

PHF8 1 dataset

ChIP K562 ENCFF217UCA 544 bp overlap

POU1F1 1 dataset

Motif DE_60h DE_60h-POU1F1_MA0784.3 14 bp overlap

POU2F3 1 dataset

Motif DE_60h DE_60h-POU2F3_MA0627.3 9 bp overlap

POU4F2 1 dataset

Motif DE_60h DE_60h-POU4F2_MA0683.2 15 bp overlap

POU5F1 1 dataset

Motif DE_60h DE_60h-POU5F1_MA1115.2 7 bp overlap

POU6F1 1 dataset

Motif DE_60h DE_60h-POU6F1_MA1549.2 7 bp overlap

POU6F2 1 dataset

Motif DE_60h DE_60h-POU6F2_MA0793.2 9 bp overlap

Pax7 1 dataset

Motif DE_60h DE_60h-Pax7_MA0680.3 10 bp overlap

Pou5f1::Sox2 1 dataset

Motif DE_60h DE_60h-Pou5f1Sox2_MA0142.1 15 bp overlap

SMAD2-3 1 dataset

ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 268 bp overlap

SMARCB1 1 dataset

ChIP hiPSC GSE124903.SMARCB1.hiPSC 179 bp overlap

SMARCC1 2 datasets

ChIP G-401_Dox GSE71504.SMARCC1.G-401_Dox 189 bp overlap

ChIP G-401_NoDox GSE71504.SMARCC1.G-401_NoDox 317 bp overlap

SPIB 1 dataset

Motif DE_60h DE_60h-SPIB_MA0081.3 13 bp overlap

Spi1 1 dataset

Motif DE_60h DE_60h-Spi1_MA0080.7 13 bp overlap

TBX18 1 dataset

Motif DE_60h DE_60h-TBX18_MA1565.2 9 bp overlap

TEAD1 1 dataset

Motif DE_60h DE_60h-TEAD1_MA0090.4 9 bp overlap

TEAD2 1 dataset

Motif DE_60h DE_60h-TEAD2_MA1121.2 7 bp overlap

TEAD3 1 dataset

Motif DE_60h DE_60h-TEAD3_MA0808.1 8 bp overlap

TEAD4 1 dataset

Motif DE_60h DE_60h-TEAD4_MA0809.3 8 bp overlap

TGIF2 2 datasets

ChIP K562 ENCFF931EYZ 142 bp overlap

ChIP K562 ENCFF931EYZ 411 bp overlap

Tfcp2l1 1 dataset

Motif DE_60h DE_60h-Tfcp2l1_MA0145.2 14 bp overlap

ZBTB12 1 dataset

Motif DE_60h DE_60h-ZBTB12_MA1649.2 7 bp overlap

ZEB1 1 dataset

Motif DE_60h DE_60h-ZEB1_MA0103.4 6 bp overlap

ZNF311 2 datasets

ChIP K562 ENCFF986QSP 161 bp overlap

ChIP K562 ENCFF986QSP 365 bp overlap

ZNF354A 1 dataset

Motif DE_60h DE_60h-ZNF354A_MA1978.2 20 bp overlap

ZNF528 1 dataset

Motif DE_60h DE_60h-ZNF528_MA1597.1 17 bp overlap

ZNF652 1 dataset

Motif DE_60h DE_60h-ZNF652_MA1657.2 9 bp overlap

ZNF667 2 datasets

Motif DE_60h DE_60h-ZNF667_MA1984.2 11 bp overlap

Motif DE_72h DE_72h-ZNF667_MA1984.2 11 bp overlap

ZNF701 1 dataset

Motif DE_60h DE_60h-ZNF701_MA1987.2 17 bp overlap