chr13 : 53,382,089 53,382,504
415 bp 68 TFs 0 linked genes
This 415 bp open chromatin element has no linked target genes and is bound by 68 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr13:53,377,089 – 53,387,504
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
68 transcription factors
Source
Cell type
BRD4 1 dataset
ChIP HUVEC-C GSE60171.BRD4.HUVEC-C 210 bp overlap
CTCF 84 datasets
ChIP 22Rv1 ENCFF466OXN 415 bp overlap
ChIP 22Rv1 ENCSR857PBV.CTCF.22Rv1 270 bp overlap
ChIP 22Rv1_hydroxy_10nM_4h ENCSR847XGE.CTCF.22Rv1_hydroxy_10nM_4h 271 bp overlap
ChIP A-549 ENCSR000AUF.CTCF.A-549 246 bp overlap
ChIP A-549 ENCSR000AUE.CTCF.A-549 211 bp overlap
ChIP A-549 ENCSR000DPF.CTCF.A-549 138 bp overlap
ChIP C4-2B ENCFF821XVN 415 bp overlap
ChIP CUTLL1_DMSO GSE130140.CTCF.CUTLL1_DMSO 134 bp overlap
ChIP D721Med ENCFF513FYD 211 bp overlap
ChIP DND41 ENCSR000AQU.CTCF.DND41 132 bp overlap
ChIP GM04025_B-lymphocytes GSE111170.CTCF.GM04025_B-lymphocytes 197 bp overlap
ChIP GM23338 ENCFF531QOI 220 bp overlap
ChIP GM23338 ENCFF772DML 127 bp overlap
ChIP GP5D GSE51234.CTCF.GP5D 413 bp overlap
ChIP H1 ENCFF414GZI 217 bp overlap
ChIP H1 ENCFF764RHO 176 bp overlap
ChIP H9 ENCFF152GTF 260 bp overlap
ChIP HAP1 GSE152721.CTCF.HAP1 264 bp overlap
ChIP HAP1_2kb GSE152721.CTCF.HAP1_2kb 276 bp overlap
ChIP HAP1_WT GSE126634.CTCF.HAP1_WT 238 bp overlap
ChIP HAP1_clone25 GSE152721.CTCF.HAP1_clone25 339 bp overlap
ChIP HEC-1-B_R1-mutation GSE140868.CTCF.HEC-1-B_R1-mutation 76 bp overlap
ChIP HEK293 ENCSR000DTW.CTCF.HEK293 182 bp overlap
ChIP HEK293T GSE115862.CTCF.HEK293T 182 bp overlap
ChIP HL-60 GSE131577.CTCF.HL-60 173 bp overlap
ChIP HT-1080_CBL0137-6h GSE122462.CTCF.HT-1080_CBL0137-6h 236 bp overlap
ChIP HUES-64 GSE97394.CTCF.HUES-64 166 bp overlap
ChIP HeLa-Kyoto GSE102884.CTCF.HeLa-Kyoto 158 bp overlap
ChIP HeLa-Kyoto_WAPL-depleted GSE102884.CTCF.HeLa-Kyoto_WAPL-depleted 202 bp overlap
ChIP HeLa-Kyoto_WAPL_PDS-depleted GSE102884.CTCF.HeLa-Kyoto_WAPL_PDS-depleted 235 bp overlap
ChIP Hep-G2 ENCSR000DLS.CTCF.Hep-G2 91 bp overlap
ChIP Hep-G2 ENCSR000DUG.CTCF.Hep-G2 123 bp overlap
ChIP K-562_11698 GSE131349.CTCF.K-562_11698 109 bp overlap
ChIP K-562_12040 GSE131349.CTCF.K-562_12040 99 bp overlap
ChIP K-562_7140 GSE131349.CTCF.K-562_7140 136 bp overlap
ChIP K-562_8005 GSE131349.CTCF.K-562_8005 119 bp overlap
ChIP KARPAS422 ENCSR113REG.CTCF.KARPAS422 283 bp overlap
ChIP Kelly_sensitive GSE103030.CTCF.Kelly_sensitive 136 bp overlap
ChIP LNCaP-C4-2B ENCSR460LGH.CTCF.LNCaP-C4-2B 307 bp overlap
ChIP Loucy ENCSR464DKE.CTCF.Loucy 163 bp overlap
ChIP MCF-7 GSE137216.CTCF.MCF-7 169 bp overlap
ChIP MCF-7 GSE70764.CTCF.MCF-7 92 bp overlap
ChIP MCF-7_NORMOXIA GSE78113.CTCF.MCF-7_NORMOXIA 282 bp overlap
ChIP MDA-MB-435_Asynchronous GSE102019.CTCF.MDA-MB-435_Asynchronous 168 bp overlap
ChIP OCI-LY1 ENCFF455ESK 318 bp overlap
ChIP OCI-LY7 ENCFF086AXQ 350 bp overlap
ChIP OCI-Ly1 ENCSR072EUE.CTCF.OCI-Ly1 290 bp overlap
ChIP OCI-Ly3 ENCSR756ZKG.CTCF.OCI-Ly3 174 bp overlap
ChIP OCI-Ly7 ENCSR027HML.CTCF.OCI-Ly7 296 bp overlap
ChIP OVCAR-8 GSE70764.CTCF.OVCAR-8 159 bp overlap
ChIP SU-DHL-6 ENCFF116KKR 356 bp overlap
ChIP THP-1_Pam3csk-045m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-045m-Flavo-000m 166 bp overlap
ChIP WA01 ENCSR000BNH.CTCF.WA01 132 bp overlap
ChIP WA01_NEUR GSE52457.CTCF.WA01_NEUR 216 bp overlap
ChIP cardiac-muscle ENCSR713SXF.CTCF.cardiac-muscle 180 bp overlap
ChIP endodermal cell ENCFF471YCZ 244 bp overlap
ChIP epithelial cell of prostate ENCFF086GTI 415 bp overlap
ChIP hESC_D0 GSE116862.CTCF.hESC_D0 244 bp overlap
ChIP hESC_D5 GSE116862.CTCF.hESC_D5 330 bp overlap
ChIP hESC_D7 GSE116862.CTCF.hESC_D7 142 bp overlap
ChIP hESC_NAIVE GSE69646.CTCF.hESC_NAIVE 279 bp overlap
ChIP hESC_PRIMED GSE69646.CTCF.hESC_PRIMED 299 bp overlap
ChIP hiPSC_Angelman GSE117283.CTCF.hiPSC_Angelman 291 bp overlap
ChIP hiPSC_CVI GSE106870.CTCF.hiPSC_CVI 213 bp overlap
ChIP hiPSC_HUES9 GSE106870.CTCF.hiPSC_HUES9 173 bp overlap
ChIP hiPSC_IB12 GSE106870.CTCF.hiPSC_IB12 222 bp overlap
ChIP hiPSC_IB7 GSE106870.CTCF.hiPSC_IB7 276 bp overlap
ChIP hiPSC_IIA11 GSE106870.CTCF.hiPSC_IIA11 188 bp overlap
ChIP hiPSC_IID12 GSE106870.CTCF.hiPSC_IID12 190 bp overlap
ChIP hiPSC_IIIB12 GSE106870.CTCF.hiPSC_IIIB12 130 bp overlap
ChIP hiPSC_IV8 GSE106870.CTCF.hiPSC_IV8 236 bp overlap
ChIP hiPSC_Prader-Willi GSE117283.CTCF.hiPSC_Prader-Willi 171 bp overlap
ChIP hiPSC_failed-genome-editing GSE106870.CTCF.hiPSC_failed-genome-editing 275 bp overlap
ChIP hiPSC_parental-line GSE106870.CTCF.hiPSC_parental-line 127 bp overlap
ChIP leukemia GSE142161.CTCF.leukemia 273 bp overlap
ChIP leukemia_CEBPA-24h GSE142161.CTCF.leukemia_CEBPA-24h 238 bp overlap
ChIP leukemia_CEBPA-96h GSE142161.CTCF.leukemia_CEBPA-96h 188 bp overlap
ChIP medulloblastoma ENCSR000DMY.CTCF.medulloblastoma 111 bp overlap
ChIP neural progenitor cell ENCFF420RBO 247 bp overlap
ChIP neural_progenitor ENCSR125NBL.CTCF.neural_progenitor 288 bp overlap
ChIP neuron_bipolar_doxy_4d ENCSR619IUE.CTCF.neuron_bipolar_doxy_4d 184 bp overlap
ChIP primary-glioblastoma_G583 GSE121601.CTCF.primary-glioblastoma_G583 211 bp overlap
ChIP progenitor cell of endocrine pancreas ENCFF492KHV 330 bp overlap
ChIP prostate_epithelial ENCSR196HOM.CTCF.prostate_epithelial 286 bp overlap
E2F2 1 dataset
Motif DE_12h DE_12h-E2F2_MA0864.3 13 bp overlap
E2F4 1 dataset
Motif DE_12h DE_12h-E2F4_MA0470.3 13 bp overlap
E2F6 1 dataset
ChIP WA01 ENCSR000BSI.E2F6.WA01 133 bp overlap
EHF 1 dataset
Motif DE_12h DE_12h-EHF_MA0598.4 9 bp overlap
ELF1 2 datasets
Motif DE_12h DE_12h-ELF1_MA0473.4 9 bp overlap
Motif DE_12h DE_12h-ELF1_MA0473.4 9 bp overlap
ELF3 1 dataset
Motif DE_12h DE_12h-ELF3_MA0640.3 9 bp overlap
ETV1 1 dataset
Motif DE_12h DE_12h-ETV1_MA0761.3 9 bp overlap
Erg 1 dataset
Motif DE_12h DE_12h-Erg_MA0474.4 10 bp overlap
FERD3L 1 dataset
Motif DE_12h DE_12h-FERD3L_MA1485.1 14 bp overlap
FIGLA 1 dataset
Motif DE_12h DE_12h-FIGLA_MA0820.2 6 bp overlap
FOXH1 1 dataset
Motif DE_12h DE_12h-FOXH1_MA0479.2 8 bp overlap
GABPA 1 dataset
Motif DE_12h DE_12h-GABPA_MA0062.4 10 bp overlap
GATA2 1 dataset
Motif DE_12h DE_12h-GATA2_MA0036.4 7 bp overlap
GATA4 1 dataset
Motif DE_12h DE_12h-GATA4_MA0482.3 8 bp overlap
GATA6 1 dataset
Motif DE_12h DE_12h-GATA6_MA1104.3 8 bp overlap
GRHL1 1 dataset
Motif DE_12h DE_12h-GRHL1_MA0647.2 10 bp overlap
GRHL2 1 dataset
Motif DE_12h DE_12h-GRHL2_MA1105.3 8 bp overlap
Gata3 1 dataset
Motif DE_12h DE_12h-Gata3_MA0037.5 8 bp overlap
Hoxd13 1 dataset
Motif DE_12h DE_12h-Hoxd13_MA0909.4 7 bp overlap
IKZF1 1 dataset
Motif DE_12h DE_12h-IKZF1_MA1508.2 8 bp overlap
IKZF2 1 dataset
Motif DE_12h DE_12h-IKZF2_MA2326.1 6 bp overlap
IRF9 1 dataset
Motif DE_12h DE_12h-IRF9_MA0653.1 15 bp overlap
ISL2 2 datasets
Motif DE_12h DE_12h-ISL2_MA0914.2 6 bp overlap
Motif DE_12h DE_12h-ISL2_MA0914.2 6 bp overlap
Ikzf3 1 dataset
Motif DE_12h DE_12h-Ikzf3_MA1992.2 9 bp overlap
MAFF 1 dataset
Motif DE_12h DE_12h-MAFF_MA0495.4 11 bp overlap
MEIS1 1 dataset
Motif DE_12h DE_12h-MEIS1_MA0498.3 5 bp overlap
Mafb 1 dataset
Motif DE_12h DE_12h-Mafb_MA0117.3 11 bp overlap
NANOG 2 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 239 bp overlap
ChIP hESC GSE18292.NANOG.hESC 105 bp overlap
NOTCH1 1 dataset
ChIP HPBALL GSE39263.NOTCH1.HPBALL 164 bp overlap
NRL 1 dataset
Motif DE_12h DE_12h-NRL_MA0842.3 12 bp overlap
ONECUT3 1 dataset
Motif DE_12h DE_12h-ONECUT3_MA0757.2 12 bp overlap
Pgr 1 dataset
Motif DE_12h DE_12h-Pgr_MA2323.1 17 bp overlap
Prdm15 1 dataset
Motif DE_12h DE_12h-Prdm15_MA1616.2 11 bp overlap
Ptf1A 1 dataset
Motif DE_12h DE_12h-Ptf1A_MA1620.2 8 bp overlap
RAD21 2 datasets
ChIP H1 ENCFF698EWO 241 bp overlap
ChIP H1 ENCFF967OJF 192 bp overlap
RBPJ 1 dataset
Motif DE_12h DE_12h-RBPJ_MA1116.2 6 bp overlap
SOX10 1 dataset
Motif DE_12h DE_12h-SOX10_MA0442.3 6 bp overlap
SOX2 2 datasets
ChIP hESC GSE18292.SOX2.hESC 95 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 216 bp overlap
Sox11 1 dataset
Motif DE_12h DE_12h-Sox11_MA0869.3 8 bp overlap
Sox17 1 dataset
Motif DE_12h DE_12h-Sox17_MA0078.3 10 bp overlap
Sox6 1 dataset
Motif DE_12h DE_12h-Sox6_MA0515.1 10 bp overlap
Sox7 1 dataset
Motif DE_12h DE_12h-Sox7_MA2095.1 10 bp overlap
Spi1 1 dataset
Motif DE_12h DE_12h-Spi1_MA0080.7 13 bp overlap
Stat4 1 dataset
Motif DE_12h DE_12h-Stat4_MA0518.2 10 bp overlap
TBX5 1 dataset
Motif DE_12h DE_12h-TBX5_MA0807.1 8 bp overlap
TCF3 1 dataset
ChIP NPC GSE154479.TCF3.NPC 160 bp overlap
TFCP2 1 dataset
Motif DE_12h DE_12h-TFCP2_MA1968.2 9 bp overlap
TRPS1 1 dataset
Motif DE_12h DE_12h-TRPS1_MA1970.2 8 bp overlap
VEZF1 1 dataset
Motif DE_12h DE_12h-VEZF1_MA1578.2 6 bp overlap
ZBTB18 1 dataset
Motif DE_12h DE_12h-ZBTB18_MA0698.2 11 bp overlap
ZEB1 1 dataset
Motif DE_12h DE_12h-ZEB1_MA0103.4 6 bp overlap
ZIC1 1 dataset
Motif DE_12h DE_12h-ZIC1_MA0696.1 14 bp overlap
ZIC4 1 dataset
Motif DE_12h DE_12h-ZIC4_MA0751.2 14 bp overlap
ZIC5 1 dataset
Motif DE_12h DE_12h-ZIC5_MA1584.2 15 bp overlap
ZNF175 1 dataset
Motif DE_12h DE_12h-ZNF175_MA2332.1 9 bp overlap
ZNF418 1 dataset
Motif DE_12h DE_12h-ZNF418_MA1980.1 15 bp overlap
ZNF707 1 dataset
Motif DE_12h DE_12h-ZNF707_MA1715.1 15 bp overlap
ZSCAN4 1 dataset
Motif DE_12h DE_12h-ZSCAN4_MA1155.1 15 bp overlap
Zfp335 1 dataset
Motif DE_12h DE_12h-Zfp335_MA2002.2 7 bp overlap
Zfp809 1 dataset
Motif DE_12h DE_12h-Zfp809_MA2125.1 9 bp overlap
Zic2 1 dataset
Motif DE_12h DE_12h-Zic2_MA1629.2 9 bp overlap