chr13 : 35,796,988 35,797,712
724 bp 54 TFs 0 linked genes
This 724 bp open chromatin element has no linked target genes and is bound by 54 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr13:35,791,988 – 35,802,712
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
54 transcription factors
Source
Cell type
ATF6 2 datasets
Motif DE_60h DE_60h-ATF6_MA1466.2 13 bp overlap
Motif DE_72h DE_72h-ATF6_MA1466.2 13 bp overlap
ATRX 1 dataset
ChIP metastatic-neuroblastoma_SKNMM GSE100148.ATRX.metastatic-neuroblastoma_SKNMM 280 bp overlap
BNC2 2 datasets
ChIP SK-N-SH ENCFF174EMC 91 bp overlap
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR754GYI.BNC2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 135 bp overlap
BRD4 5 datasets
ChIP BE2C GSE80151.BRD4.BE2C 219 bp overlap
ChIP Kelly_sensitive GSE103030.BRD4.Kelly_sensitive 608 bp overlap
ChIP SK-N-BE2-C GSE80151.BRD4.SK-N-BE2-C 219 bp overlap
ChIP SK-N-BE2-C_Naive-veh GSE107706.BRD4.SK-N-BE2-C_Naive-veh 155 bp overlap
ChIP SK-N-BE2-C_Naive-veh GSE107706.BRD4.SK-N-BE2-C_Naive-veh 291 bp overlap
CSDC2 1 dataset
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR474KBG.CSDC2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 559 bp overlap
ERF::HOXB13 2 datasets
Motif DE_60h DE_60h-ERFHOXB13_MA1937.2 13 bp overlap
Motif DE_72h DE_72h-ERFHOXB13_MA1937.2 13 bp overlap
ERG 1 dataset
ChIP aortic-endothelial-cell_D5 GSE139377.ERG.aortic-endothelial-cell_D5 56 bp overlap
ESR1 6 datasets
ChIP Ishikawa_siETV4-72h GSE129803.ESR1.Ishikawa_siETV4-72h 250 bp overlap
ChIP Ishikawa_siNTC-72h GSE129803.ESR1.Ishikawa_siNTC-72h 207 bp overlap
ChIP Ishikawa_siNTC-96h GSE129803.ESR1.Ishikawa_siNTC-96h 241 bp overlap
ChIP MCF-7 GSE45822.ESR1.MCF-7 162 bp overlap
ChIP MCF-7_E2 GSE60270.ESR1.MCF-7_E2 170 bp overlap
ChIP MCF-7_E2-5min-ERalpha GSE94023.ESR1.MCF-7_E2-5min-ERalpha 129 bp overlap
ESR1_Y537N 2 datasets
ChIP MCF-7_dox GSE94493.ESR1_Y537N.MCF-7_dox 177 bp overlap
ChIP MCF-7_dox_E2 GSE94493.ESR1_Y537N.MCF-7_dox_E2 125 bp overlap
ESRRG 1 dataset
ChIP cardiomyocyte GSE113760.ESRRG.cardiomyocyte 224 bp overlap
EZH2 2 datasets
ChIP SU-DHL-5 GSE45982.EZH2.SU-DHL-5 128 bp overlap
ChIP THP-1 GSE135024.EZH2.THP-1 230 bp overlap
Elf5 2 datasets
Motif DE_60h DE_60h-Elf5_MA0136.4 8 bp overlap
Motif DE_72h DE_72h-Elf5_MA0136.4 8 bp overlap
FOXA1 1 dataset
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA1.pancreatic-progenitor_PP1 456 bp overlap
FOXA2 3 datasets
ChIP DE DE-FOXA2-1 547 bp overlap
ChIP DE DE-FOXA2-2 424 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA2.pancreatic-progenitor_PP1 337 bp overlap
GATA1 2 datasets
Motif DE_60h DE_60h-GATA1_MA0035.5 7 bp overlap
Motif DE_72h DE_72h-GATA1_MA0035.5 7 bp overlap
GATA4 9 datasets
ChIP DE DE-GATA4-1 495 bp overlap
ChIP DE DE-GATA4-2 418 bp overlap
Motif DE_60h DE_60h-GATA4_MA0482.3 8 bp overlap
Motif DE_72h DE_72h-GATA4_MA0482.3 8 bp overlap
ChIP cardiomyocyte_5 GSE85628.GATA4.cardiomyocyte_5 216 bp overlap
ChIP cardiomyocyte_7 GSE85628.GATA4.cardiomyocyte_7 208 bp overlap
ChIP foregut GSE117136.GATA4.foregut 484 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 724 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 685 bp overlap
GATA5 2 datasets
Motif DE_60h DE_60h-GATA5_MA0766.3 8 bp overlap
Motif DE_72h DE_72h-GATA5_MA0766.3 8 bp overlap
GATA6 11 datasets
ChIP DE DE-GATA6-1 496 bp overlap
ChIP DE DE-GATA6-2 509 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 265 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 319 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 423 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 322 bp overlap
ChIP foregut GSE117136.GATA6.foregut 331 bp overlap
ChIP foregut_KO GSE117136.GATA6.foregut_KO 359 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 534 bp overlap
ChIP pancreatic-progenitor_KO GSE117136.GATA6.pancreatic-progenitor_KO 532 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 564 bp overlap
GLIS3 1 dataset
ChIP SK-N-SH ENCFF370MHZ 71 bp overlap
HAND2 5 datasets
ChIP CLB-Ga GSE90683.HAND2.CLB-Ga 77 bp overlap
ChIP Kelly GSE94822.HAND2.Kelly 114 bp overlap
ChIP Kelly GSE94822.HAND2.Kelly 177 bp overlap
ChIP SK-N-BE2-C GSE94822.HAND2.SK-N-BE2-C 212 bp overlap
ChIP SK-N-BE2-C GSE94822.HAND2.SK-N-BE2-C 287 bp overlap
IRF3 2 datasets
Motif DE_60h DE_60h-IRF3_MA1418.2 17 bp overlap
Motif DE_72h DE_72h-IRF3_MA1418.2 17 bp overlap
ISL1 1 dataset
ChIP SK-N-BE2-C GSE94822.ISL1.SK-N-BE2-C 193 bp overlap
KDM1A 1 dataset
ChIP pancreatic-progenitor_PP1 GSE104840.KDM1A.pancreatic-progenitor_PP1 394 bp overlap
MEIS1 2 datasets
Motif DE_60h DE_60h-MEIS1_MA0498.3 5 bp overlap
Motif DE_72h DE_72h-MEIS1_MA0498.3 5 bp overlap
MEIS2 2 datasets
Motif DE_60h DE_60h-MEIS2_MA0774.1 8 bp overlap
Motif DE_72h DE_72h-MEIS2_MA0774.1 8 bp overlap
MEIS3 2 datasets
Motif DE_60h DE_60h-MEIS3_MA0775.2 7 bp overlap
Motif DE_72h DE_72h-MEIS3_MA0775.2 7 bp overlap
MYCN 1 dataset
ChIP Kelly GSE94822.MYCN.Kelly 238 bp overlap
MYOD1 1 dataset
ChIP RH4 GSE83726.MYOD1.RH4 186 bp overlap
NR3C1 1 dataset
ChIP A-549 ENCSR000BHG.NR3C1.A-549 120 bp overlap
PDX1 1 dataset
ChIP hiPSC GSE125768.PDX1.hiPSC 215 bp overlap
Prdm5 2 datasets
Motif DE_60h DE_60h-Prdm5_MA1999.2 11 bp overlap
Motif DE_72h DE_72h-Prdm5_MA1999.2 11 bp overlap
RBPJ 2 datasets
Motif DE_60h DE_60h-RBPJ_MA1116.2 6 bp overlap
Motif DE_72h DE_72h-RBPJ_MA1116.2 6 bp overlap
RFX4 2 datasets
Motif DE_60h DE_60h-RFX4_MA0799.3 13 bp overlap
Motif DE_72h DE_72h-RFX4_MA0799.3 13 bp overlap
Rfx6 2 datasets
Motif DE_60h DE_60h-Rfx6_MA1724.2 9 bp overlap
Motif DE_72h DE_72h-Rfx6_MA1724.2 9 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 272 bp overlap
SMARCA4 3 datasets
ChIP NGP_ARID1A-mut1 GSE134626.SMARCA4.NGP_ARID1A-mut1 217 bp overlap
ChIP NGP_ARID1A-mut2 GSE134626.SMARCA4.NGP_ARID1A-mut2 724 bp overlap
ChIP TTC-1240_delC GSE124903.SMARCA4.TTC-1240_delC 327 bp overlap
SMARCC1 1 dataset
ChIP TTC-1240_delC GSE124903.SMARCC1.TTC-1240_delC 335 bp overlap
SOX13 2 datasets
Motif DE_60h DE_60h-SOX13_MA1120.2 7 bp overlap
Motif DE_72h DE_72h-SOX13_MA1120.2 7 bp overlap
SOX2 2 datasets
Motif DE_60h DE_60h-SOX2_MA0143.5 7 bp overlap
Motif DE_72h DE_72h-SOX2_MA0143.5 7 bp overlap
STAT1 2 datasets
Motif DE_60h DE_60h-STAT1_MA0137.4 9 bp overlap
Motif DE_72h DE_72h-STAT1_MA0137.4 9 bp overlap
STAT3 2 datasets
Motif DE_60h DE_60h-STAT3_MA0144.3 9 bp overlap
Motif DE_72h DE_72h-STAT3_MA0144.3 9 bp overlap
Sox3 2 datasets
Motif DE_60h DE_60h-Sox3_MA0514.3 7 bp overlap
Motif DE_72h DE_72h-Sox3_MA0514.3 7 bp overlap
Stat4 2 datasets
Motif DE_60h DE_60h-Stat4_MA0518.2 10 bp overlap
Motif DE_72h DE_72h-Stat4_MA0518.2 10 bp overlap
TBX5 1 dataset
ChIP hiPSC GSE81585.TBX5.hiPSC 200 bp overlap
TEAD1 1 dataset
ChIP pancreas_12D ERP008682.TEAD1.pancreas_12D 138 bp overlap
TFAP2A 1 dataset
ChIP WA09 GSE105081.TFAP2A.WA09 152 bp overlap
TSHZ2 1 dataset
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR282NLQ.TSHZ2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 148 bp overlap
Tfcp2l1 2 datasets
Motif DE_60h DE_60h-Tfcp2l1_MA0145.2 14 bp overlap
Motif DE_72h DE_72h-Tfcp2l1_MA0145.2 14 bp overlap
ZBTB17 2 datasets
Motif DE_60h DE_60h-ZBTB17_MA2102.1 8 bp overlap
Motif DE_72h DE_72h-ZBTB17_MA2102.1 8 bp overlap
ZBTB24 2 datasets
Motif DE_60h DE_60h-ZBTB24_MA2330.1 10 bp overlap
Motif DE_72h DE_72h-ZBTB24_MA2330.1 10 bp overlap
ZFP3 2 datasets
ChIP SK-N-SH ENCFF981MBE 66 bp overlap
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR581GUY.ZFP3.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 508 bp overlap
ZNF354A 2 datasets
Motif DE_60h DE_60h-ZNF354A_MA1978.2 20 bp overlap
Motif DE_72h DE_72h-ZNF354A_MA1978.2 20 bp overlap
Zfp809 2 datasets
Motif DE_60h DE_60h-Zfp809_MA2125.1 9 bp overlap
Motif DE_72h DE_72h-Zfp809_MA2125.1 9 bp overlap