chr13 : 35,551,687 35,552,356
669 bp 35 TFs 0 linked genes
This 669 bp open chromatin element has no linked target genes and is bound by 35 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr13:35,546,687 – 35,557,356
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
35 transcription factors
Source
Cell type
BRD4 3 datasets
ChIP HCC1806_DMSO_24h GSE87418.BRD4.HCC1806_DMSO_24h 240 bp overlap
ChIP PC-3_GDC-R_SAHA GSE137207.BRD4.PC-3_GDC-R_SAHA 196 bp overlap
ChIP SK-N-BE2-C_Naive-veh GSE107706.BRD4.SK-N-BE2-C_Naive-veh 138 bp overlap
CHD4 1 dataset
ChIP HaCaT GSE139685.CHD4.HaCaT 264 bp overlap
DUX4 1 dataset
ChIP WA01 GSE94322.DUX4.WA01 264 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 256 bp overlap
EP300 3 datasets
ChIP SK-N-SH ENCFF829RWA 149 bp overlap
ChIP SK-N-SH ENCSR000EHV.EP300.SK-N-SH 143 bp overlap
ChIP SK-N-SH ENCSR000BUA.EP300.SK-N-SH 54 bp overlap
ERG 1 dataset
ChIP RWPE-1 GSE114241.ERG.RWPE-1 599 bp overlap
FOXA1 2 datasets
ChIP PDAC_KOKLF5 GSE64557.FOXA1.PDAC_KOKLF5 204 bp overlap
ChIP PDAC_SHCTR GSE64557.FOXA1.PDAC_SHCTR 103 bp overlap
FOXA2 5 datasets
ChIP CFPAC-1 GSE119930.FOXA2.CFPAC-1 73 bp overlap
ChIP CFPAC-1_EV GSE119930.FOXA2.CFPAC-1_EV 84 bp overlap
ChIP CFPAC-1_HOXB8-OE GSE119930.FOXA2.CFPAC-1_HOXB8-OE 94 bp overlap
ChIP DE DE-FOXA2-1 669 bp overlap
ChIP DE DE-FOXA2-2 669 bp overlap
GATA2 2 datasets
ChIP SK-N-SH ENCFF764OZD 301 bp overlap
ChIP SK-N-SH ENCSR706VOO.GATA2.SK-N-SH 235 bp overlap
GATA3 4 datasets
ChIP Kelly GSE65664.GATA3.Kelly 197 bp overlap
ChIP Kelly GSE94822.GATA3.Kelly 189 bp overlap
ChIP SK-N-BE2-C GSE94822.GATA3.SK-N-BE2-C 236 bp overlap
ChIP SK-N-SH ENCFF040SSB 80 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 662 bp overlap
ChIP DE DE-GATA4-2 669 bp overlap
GATA6 4 datasets
ChIP DE DE-GATA6-1 656 bp overlap
ChIP DE DE-GATA6-2 669 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 373 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 350 bp overlap
HAND2 1 dataset
ChIP SK-N-BE2-C GSE94822.HAND2.SK-N-BE2-C 319 bp overlap
HOXB8 1 dataset
ChIP CFPAC-1_HOXB8-OE GSE119930.HOXB8.CFPAC-1_HOXB8-OE 126 bp overlap
ISL1 1 dataset
ChIP SK-N-BE2-C GSE94822.ISL1.SK-N-BE2-C 342 bp overlap
LHX2 1 dataset
ChIP retina_pigment GSE60024.LHX2.retina_pigment 83 bp overlap
MAF 1 dataset
ChIP CD4_TH2 GSE72266.MAF.CD4_TH2 177 bp overlap
MYCN 1 dataset
ChIP SK-N-BE2-C GSE94822.MYCN.SK-N-BE2-C 76 bp overlap
NEUROD1 2 datasets
ChIP D283-Med GSE92582.NEUROD1.D283-Med 669 bp overlap
ChIP D283-Med_shNEUROD1-1579 GSE92582.NEUROD1.D283-Med_shNEUROD1-1579 620 bp overlap
NKX2-1 1 dataset
ChIP NCI-H3122 GSE39998.NKX2-1.NCI-H3122 211 bp overlap
OTX2 1 dataset
ChIP retina_pigment GSE60024.OTX2.retina_pigment 194 bp overlap
PHOX2B 1 dataset
ChIP SK-N-BE2-C GSE94822.PHOX2B.SK-N-BE2-C 221 bp overlap
RCOR1 1 dataset
ChIP SK-N-SH ENCSR009TKN.RCOR1.SK-N-SH 122 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 552 bp overlap
SMARCA4 4 datasets
ChIP NGP_ARID1A-mut1 GSE134626.SMARCA4.NGP_ARID1A-mut1 288 bp overlap
ChIP NGP_ARID1A-mut2 GSE134626.SMARCA4.NGP_ARID1A-mut2 347 bp overlap
ChIP NPC_K755R-siAP GSE122631.SMARCA4.NPC_K755R-siAP 291 bp overlap
ChIP NPC_K755R-siCT GSE122631.SMARCA4.NPC_K755R-siCT 179 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 431 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 361 bp overlap
SOX2 3 datasets
ChIP HCC95 GSE137459.SOX2.HCC95 355 bp overlap
ChIP KYSE-70 GSE46837.SOX2.KYSE-70 394 bp overlap
ChIP LK2_GFP GSE137459.SOX2.LK2_GFP 245 bp overlap
TAF1 1 dataset
ChIP SK-N-SH ENCSR000BQF.TAF1.SK-N-SH 81 bp overlap
TBX2 2 datasets
ChIP Kelly GSE94822.TBX2.Kelly 176 bp overlap
ChIP SK-N-BE2-C GSE94822.TBX2.SK-N-BE2-C 254 bp overlap
TEAD4 1 dataset
ChIP SK-N-SH ENCSR000BUQ.TEAD4.SK-N-SH 61 bp overlap
TP63 2 datasets
ChIP BxPC-3 GSE115461.TP63.BxPC-3 167 bp overlap
ChIP keratinocyte_epidermal GSE67382.TP63.keratinocyte_epidermal 58 bp overlap
ZNF175 1 dataset
ChIP HEK293 GSE76494.ZNF175.HEK293 219 bp overlap
ZNF528 1 dataset
ChIP HEK293 GSE76494.ZNF528.HEK293 495 bp overlap