chr12 : 93,007,683 93,007,874
191 bp 48 TFs 1 linked gene
This 191 bp open chromatin element is linked to LINC02413 and is bound by 48 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
LINC02413 8.5 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr12:93,002,683 – 93,012,874
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
48 transcription factors
Source
Cell type
AR 2 datasets
ChIP LNCaP_r1881 GSE94682.AR.LNCaP_r1881 140 bp overlap
ChIP VCaP_DHT24H_SHFOXP1 GSE58428.AR.VCaP_DHT24H_SHFOXP1 177 bp overlap
ARID2 1 dataset
ChIP Hep-G2 GSE69566.ARID2.Hep-G2 73 bp overlap
ARID5B 1 dataset
ChIP HepG2 ENCFF964FWK 191 bp overlap
BCL6 1 dataset
ChIP HepG2 ENCFF423EJH 191 bp overlap
BRD4 2 datasets
ChIP CHL-1 GSE95585.BRD4.CHL-1 191 bp overlap
ChIP SUM159PT_scramble GSE131097.BRD4.SUM159PT_scramble 67 bp overlap
CEBPA 1 dataset
ChIP HepG2 ENCFF175DFS 191 bp overlap
DPF2 1 dataset
ChIP GM12878 ENCFF681AJV 124 bp overlap
DRAP1 1 dataset
ChIP Hep-G2 ENCSR765MKZ.DRAP1.Hep-G2 191 bp overlap
EGR1 2 datasets
ChIP Hep-G2 ENCSR026GSW.EGR1.Hep-G2 191 bp overlap
ChIP HepG2 ENCFF674RQO 191 bp overlap
EP300 1 dataset
ChIP Hep-G2 ENCSR000BLW.EP300.Hep-G2 146 bp overlap
FOXA1 15 datasets
ChIP HepG2 ENCFF207NVJ 71 bp overlap
ChIP HepG2 ENCFF740VZW 191 bp overlap
ChIP MCF-7 ERP000380.FOXA1.MCF-7 128 bp overlap
ChIP MCF-7_TAMR_E2_TAM ERP000380.FOXA1.MCF-7_TAMR_E2_TAM 154 bp overlap
ChIP MCF-7_TNF GSE59530.FOXA1.MCF-7_TNF 173 bp overlap
ChIP T-47D_CR3flp GSE99479.FOXA1.T-47D_CR3flp 130 bp overlap
ChIP T-47D_DMSO GSE84593.FOXA1.T-47D_DMSO 116 bp overlap
ChIP T-47D_shRNF2 GSE137579.FOXA1.T-47D_shRNF2 165 bp overlap
ChIP T-47D_shRNF2_24h GSE137579.FOXA1.T-47D_shRNF2_24h 169 bp overlap
ChIP T-47D_shRNF2_8h GSE137579.FOXA1.T-47D_shRNF2_8h 149 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA1.pancreatic-progenitor_PP1 173 bp overlap
ChIP primary-prostate-cancer_G2_DSG GSE114737.FOXA1.primary-prostate-cancer_G2_DSG 159 bp overlap
ChIP primary-prostate-cancer_P2_DSG GSE114737.FOXA1.primary-prostate-cancer_P2_DSG 175 bp overlap
ChIP prostate_2483_T GSE130408.FOXA1.prostate_2483_T 170 bp overlap
ChIP prostate_P19_T GSE130408.FOXA1.prostate_P19_T 63 bp overlap
FOXA2 7 datasets
ChIP Caco-2 GSE66218.FOXA2.Caco-2 115 bp overlap
ChIP DE DE-FOXA2-1 191 bp overlap
ChIP DE DE-FOXA2-2 191 bp overlap
ChIP HepG2 ENCFF533COJ 191 bp overlap
ChIP HepG2 ENCFF894AYY 191 bp overlap
ChIP liver_CARN1618 ERP008682.FOXA2.liver_CARN1618 191 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA2.pancreatic-progenitor_PP1 178 bp overlap
FOXA3 1 dataset
ChIP HepG2 ENCFF005KGL 191 bp overlap
FOXP1 1 dataset
ChIP Hep-G2 ENCSR369YUK.FOXP1.Hep-G2 138 bp overlap
FOXP4 2 datasets
ChIP Hep-G2 ENCSR232LLP.FOXP4.Hep-G2 191 bp overlap
ChIP HepG2 ENCFF462ULY 191 bp overlap
GATA3 1 dataset
ChIP T-47D ENCSR000BMX.GATA3.T-47D 134 bp overlap
GATA4 4 datasets
ChIP DE DE-GATA4-1 191 bp overlap
ChIP DE DE-GATA4-2 191 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 191 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 191 bp overlap
GATA6 3 datasets
ChIP DE DE-GATA6-1 191 bp overlap
ChIP DE DE-GATA6-2 191 bp overlap
ChIP foregut GSE117136.GATA6.foregut 191 bp overlap
GATAD2A 1 dataset
ChIP HepG2 ENCFF252XNH 191 bp overlap
HDAC2 2 datasets
ChIP Hep-G2 ENCSR000BMC.HDAC2.Hep-G2 141 bp overlap
ChIP HepG2 ENCFF087XCR 191 bp overlap
HOXB13 2 datasets
ChIP prostate_P19_T GSE130408.HOXB13.prostate_P19_T 128 bp overlap
ChIP prostate_P29_T GSE130408.HOXB13.prostate_P29_T 167 bp overlap
ISL2 1 dataset
ChIP Hep-G2 ENCSR492IHH.ISL2.Hep-G2 181 bp overlap
KDM1A 1 dataset
ChIP pancreatic-progenitor_GT GSE104840.KDM1A.pancreatic-progenitor_GT 191 bp overlap
KMT2A 1 dataset
ChIP Hep-G2 ENCSR692GFR.KMT2A.Hep-G2 191 bp overlap
LCOR 1 dataset
ChIP HepG2 ENCFF499KCU 191 bp overlap
MAX 2 datasets
ChIP HepG2 ENCFF507HCX 191 bp overlap
ChIP HepG2 ENCFF507HCX 91 bp overlap
MEF2A 1 dataset
ChIP Hep-G2 ENCSR291MJH.MEF2A.Hep-G2 136 bp overlap
MGA 1 dataset
ChIP HepG2 ENCFF057YJE 162 bp overlap
NCOA2 1 dataset
ChIP MCF-7_E2 ERP000901.NCOA2.MCF-7_E2 107 bp overlap
NFIC 1 dataset
ChIP HepG2 ENCFF169TKU 191 bp overlap
PROX1 1 dataset
ChIP HepG2 ENCFF016ZJS 191 bp overlap
RBFOX2 2 datasets
ChIP HepG2 ENCFF554DMZ 191 bp overlap
ChIP HepG2 ENCFF939HTZ 191 bp overlap
RELA 7 datasets
ChIP aortic-endothelial-cell_IL1B_D13 GSE139377.RELA.aortic-endothelial-cell_IL1B_D13 185 bp overlap
ChIP aortic-endothelial-cell_IL1B_D16 GSE139377.RELA.aortic-endothelial-cell_IL1B_D16 191 bp overlap
ChIP aortic-endothelial-cell_IL1B_D2 GSE139377.RELA.aortic-endothelial-cell_IL1B_D2 180 bp overlap
ChIP aortic-endothelial-cell_IL1B_D21 GSE139377.RELA.aortic-endothelial-cell_IL1B_D21 147 bp overlap
ChIP aortic-endothelial-cell_IL1B_D22 GSE139377.RELA.aortic-endothelial-cell_IL1B_D22 190 bp overlap
ChIP aortic-endothelial-cell_IL1B_D39 GSE139377.RELA.aortic-endothelial-cell_IL1B_D39 191 bp overlap
ChIP aortic-endothelial-cell_IL1B_D6 GSE139377.RELA.aortic-endothelial-cell_IL1B_D6 142 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 191 bp overlap
SMARCB1 1 dataset
ChIP Hep-G2 GSE69566.SMARCB1.Hep-G2 178 bp overlap
SNAPC4 2 datasets
ChIP HepG2 ENCFF536CFY 173 bp overlap
ChIP HepG2 ENCFF536CFY 191 bp overlap
SOX13 1 dataset
ChIP HepG2 ENCFF062VSQ 172 bp overlap
SOX5 1 dataset
ChIP HepG2 ENCFF470KZD 95 bp overlap
SOX6 3 datasets
ChIP Hep-G2 ENCSR766TSU.SOX6.Hep-G2 191 bp overlap
ChIP HepG2 ENCFF767OCK 191 bp overlap
ChIP HepG2 ENCFF767OCK 116 bp overlap
ZBTB17 1 dataset
ChIP HEK293 ENCFF865LIO 191 bp overlap
ZGPAT 1 dataset
ChIP Hep-G2 ENCSR704IGU.ZGPAT.Hep-G2 191 bp overlap
ZNF221 1 dataset
ChIP HepG2 ENCFF374BUN 191 bp overlap
ZNF615 1 dataset
ChIP HepG2 ENCFF440YLL 191 bp overlap
ZNF710 1 dataset
ChIP HepG2 ENCFF170JWO 191 bp overlap