chr12 : 85,835,603 85,835,713
110 bp 47 TFs 1 linked gene
This 110 bp open chromatin element is linked to RASSF9 and is bound by 47 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
RASSF9 695 bp At TSS Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr12:85,830,603 – 85,840,713
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
47 transcription factors
Source
Cell type
ARID2 1 dataset
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.ARID2.BIN-67_lentivirus-SMARCA4 110 bp overlap
BRD2 3 datasets
ChIP SUM149PT_DMSO GSE131097.BRD2.SUM149PT_DMSO 110 bp overlap
ChIP SUM159PT_DMSO GSE116879.BRD2.SUM159PT_DMSO 70 bp overlap
ChIP SUM159PT_MGSK2801 GSE116879.BRD2.SUM159PT_MGSK2801 82 bp overlap
BRD4 5 datasets
ChIP HCC1395 GSE63581.BRD4.HCC1395 110 bp overlap
ChIP HeLa_JQ1 GSE151038.BRD4.HeLa_JQ1 84 bp overlap
ChIP SUM159PT_100nMtrametinib_24h GSE87418.BRD4.SUM159PT_100nMtrametinib_24h 110 bp overlap
ChIP SUM159PT_100nMtrametinib_72h GSE87418.BRD4.SUM159PT_100nMtrametinib_72h 110 bp overlap
ChIP SUM159PT_100nMtrametinib_8h GSE87418.BRD4.SUM159PT_100nMtrametinib_8h 110 bp overlap
CDK8 1 dataset
ChIP leiomyoma_PT886 GSE128230.CDK8.leiomyoma_PT886 62 bp overlap
CHD7 1 dataset
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 110 bp overlap
CTCFL 1 dataset
ChIP FT282 GSE131931.CTCFL.FT282 110 bp overlap
EP300 1 dataset
ChIP HeLa-S3 ENCSR680OFU.EP300.HeLa-S3 110 bp overlap
FOSL2 2 datasets
ChIP NPC_K755R-pos GSE122631.FOSL2.NPC_K755R-pos 110 bp overlap
ChIP NPC_R1159Q GSE122631.FOSL2.NPC_R1159Q 110 bp overlap
FOXL2 2 datasets
ChIP KGN_1512 GSE138496.FOXL2.KGN_1512 110 bp overlap
ChIP KGN_1513 GSE138496.FOXL2.KGN_1513 110 bp overlap
HOXB13 1 dataset
ChIP prostate_P29_T GSE130408.HOXB13.prostate_P29_T 80 bp overlap
HSF1 1 dataset
Motif DE_12h DE_12h-HSF1_MA0486.2 13 bp overlap
HSF4 1 dataset
Motif DE_12h DE_12h-HSF4_MA0771.1 13 bp overlap
IKZF3 2 datasets
ChIP HEK293 ENCFF518OXG 110 bp overlap
ChIP HEK293 ENCSR304AMN.IKZF3.HEK293 110 bp overlap
INO80 1 dataset
ChIP Huh-7 GSE97411.INO80.Huh-7 110 bp overlap
KMT2D 2 datasets
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.KMT2D.BIN-67_lentivirus-SMARCA4 89 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.KMT2D.BIN-67_lentivirus-SMARCA4-T910M 110 bp overlap
MAFF 1 dataset
ChIP HeLa-S3 ENCSR140DSL.MAFF.HeLa-S3 110 bp overlap
MCRS1 1 dataset
ChIP Huh-7 GSE97411.MCRS1.Huh-7 95 bp overlap
MED1 2 datasets
ChIP G296S GSE85628.MED1.G296S 110 bp overlap
ChIP G296S_2 GSE85628.MED1.G296S_2 110 bp overlap
MED12 1 dataset
ChIP leiomyoma_PT886 GSE128230.MED12.leiomyoma_PT886 57 bp overlap
NANOG 1 dataset
ChIP hESC GSE18292.NANOG.hESC 77 bp overlap
NFATC3 1 dataset
Motif DE_12h DE_12h-NFATC3_MA0625.3 6 bp overlap
NFATC4 1 dataset
Motif DE_12h DE_12h-NFATC4_MA1525.3 9 bp overlap
NFIB 1 dataset
Motif DE_12h DE_12h-NFIB_MA1643.2 17 bp overlap
NFIC 3 datasets
ChIP Ishikawa ENCSR000BUT.NFIC.Ishikawa 96 bp overlap
ChIP SK-N-SH ENCFF965AKM 110 bp overlap
ChIP SK-N-SH ENCSR000BSV.NFIC.SK-N-SH 110 bp overlap
Nfatc1 1 dataset
Motif DE_12h DE_12h-Nfatc1_MA0624.3 6 bp overlap
Nfatc2 1 dataset
Motif DE_12h DE_12h-Nfatc2_MA0152.3 8 bp overlap
PRDM4 1 dataset
ChIP HEK293 ENCFF069PHD 54 bp overlap
PRDM6 1 dataset
ChIP HEK293 GSE76494.PRDM6.HEK293 76 bp overlap
Prdm15 1 dataset
Motif DE_12h DE_12h-Prdm15_MA1616.2 11 bp overlap
RBPJ 1 dataset
Motif DE_12h DE_12h-RBPJ_MA1116.2 6 bp overlap
RCOR1 1 dataset
ChIP keratinocyte_diff GSE57702.RCOR1.keratinocyte_diff 110 bp overlap
RING1 1 dataset
ChIP SYO-1_shRING1A-B GSE139053.RING1.SYO-1_shRING1A-B 110 bp overlap
RNF2 1 dataset
ChIP SYO-1_shRING1A-B GSE139053.RNF2.SYO-1_shRING1A-B 110 bp overlap
SIX2 1 dataset
Motif DE_12h DE_12h-SIX2_MA1119.2 11 bp overlap
SMARCA2 4 datasets
ChIP NPC_K755R-pos GSE122631.SMARCA2.NPC_K755R-pos 110 bp overlap
ChIP NPC_K755R-pos_ab GSE122631.SMARCA2.NPC_K755R-pos_ab 101 bp overlap
ChIP NPC_K755R-siAP GSE122631.SMARCA2.NPC_K755R-siAP 110 bp overlap
ChIP NPC_K755R-siCT GSE122631.SMARCA2.NPC_K755R-siCT 110 bp overlap
SMARCA4 6 datasets
ChIP 22Rv1_PTEN-KO GSE115615.SMARCA4.22Rv1_PTEN-KO 90 bp overlap
ChIP A-549_AG15685 GSE132290.SMARCA4.A-549_AG15685 75 bp overlap
ChIP A-549_AG15723 GSE132290.SMARCA4.A-549_AG15723 52 bp overlap
ChIP NPC_K755R-siCT GSE122631.SMARCA4.NPC_K755R-siCT 110 bp overlap
ChIP endometrial-epithelial-cells_KO GSE106660.SMARCA4.endometrial-epithelial-cells_KO 110 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 110 bp overlap
SMARCC1 5 datasets
ChIP Aska-SS GSE108025.SMARCC1.Aska-SS 110 bp overlap
ChIP BIN-67 GSE117734.SMARCC1.BIN-67 54 bp overlap
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.SMARCC1.BIN-67_lentivirus-SMARCA4 110 bp overlap
ChIP DE_D1 S10-DE-d1-BAF155-exp1 110 bp overlap
ChIP HS-SY-2 GSE108025.SMARCC1.HS-SY-2 110 bp overlap
SS18 1 dataset
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.SS18.BIN-67_lentivirus-SMARCA4 110 bp overlap
STAT3 2 datasets
Motif DE_12h DE_12h-STAT3_MA0144.3 9 bp overlap
ChIP MDA-MB-157_EtOH GSE85579.STAT3.MDA-MB-157_EtOH 110 bp overlap
TEAD1 8 datasets
Motif DE_12h DE_12h-TEAD1_MA0090.4 9 bp overlap
Motif DE_12h DE_12h-TEAD1_MA0090.4 9 bp overlap
ChIP HEK293_siE1A GSE130135.TEAD1.HEK293_siE1A 110 bp overlap
ChIP HUCCT1 GSE68296.TEAD1.HUCCT1 110 bp overlap
ChIP MSTO GSE68170.TEAD1.MSTO 110 bp overlap
ChIP adipocyte GSE140782.TEAD1.adipocyte 110 bp overlap
ChIP keratinocyte GSE138727.TEAD1.keratinocyte 110 bp overlap
ChIP pancreas_12D ERP008682.TEAD1.pancreas_12D 110 bp overlap
TEAD2 1 dataset
Motif DE_12h DE_12h-TEAD2_MA1121.2 7 bp overlap
TEAD3 2 datasets
Motif DE_12h DE_12h-TEAD3_MA0808.1 8 bp overlap
Motif DE_12h DE_12h-TEAD3_MA0808.1 8 bp overlap
TEAD4 6 datasets
Motif DE_12h DE_12h-TEAD4_MA0809.3 8 bp overlap
ChIP H1 ENCFF778PAX 110 bp overlap
ChIP HEK293_siCtrl GSE130135.TEAD4.HEK293_siCtrl 102 bp overlap
ChIP HEK293_siE1A GSE130135.TEAD4.HEK293_siE1A 110 bp overlap
ChIP Ishikawa ENCFF772OTG 110 bp overlap
ChIP Ishikawa ENCSR000BSW.TEAD4.Ishikawa 110 bp overlap
TP63 1 dataset
ChIP MCF-10A_Nutlin3A GSE111009.TP63.MCF-10A_Nutlin3A 110 bp overlap
ZNF816 1 dataset
Motif DE_12h DE_12h-ZNF816_MA1719.2 15 bp overlap