chr12 : 60,980,429 – 60,980,979
550 bp 86 TFs 0 linked genes
This 550 bp open chromatin element has no linked target genes and is bound by 86 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr12:60,975,429 – 60,985,979
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
86 transcription factors
Source
Cell type
AR 1 dataset
ChIP LNCaP-clone-FGC_DHT-ABBV-744 GSE118247.AR.LNCaP-clone-FGC_DHT-ABBV-744 409 bp overlap
BARX1 3 datasets
Motif DE_36h DE_36h-BARX1_MA0875.2 6 bp overlap
Motif DE_48h DE_48h-BARX1_MA0875.2 6 bp overlap
Motif DE_60h DE_60h-BARX1_MA0875.2 6 bp overlap
BSX 3 datasets
Motif DE_36h DE_36h-BSX_MA0876.2 6 bp overlap
Motif DE_48h DE_48h-BSX_MA0876.2 6 bp overlap
Motif DE_60h DE_60h-BSX_MA0876.2 6 bp overlap
CHD7 1 dataset
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 456 bp overlap
DLX1 3 datasets
Motif DE_36h DE_36h-DLX1_MA0879.3 6 bp overlap
Motif DE_48h DE_48h-DLX1_MA0879.3 6 bp overlap
Motif DE_60h DE_60h-DLX1_MA0879.3 6 bp overlap
DLX6 3 datasets
Motif DE_36h DE_36h-DLX6_MA0882.2 6 bp overlap
Motif DE_48h DE_48h-DLX6_MA0882.2 6 bp overlap
Motif DE_60h DE_60h-DLX6_MA0882.2 6 bp overlap
Dlx2 3 datasets
Motif DE_36h DE_36h-Dlx2_MA0885.3 8 bp overlap
Motif DE_48h DE_48h-Dlx2_MA0885.3 8 bp overlap
Motif DE_60h DE_60h-Dlx2_MA0885.3 8 bp overlap
Dlx3 3 datasets
Motif DE_36h DE_36h-Dlx3_MA0880.2 6 bp overlap
Motif DE_48h DE_48h-Dlx3_MA0880.2 6 bp overlap
Motif DE_60h DE_60h-Dlx3_MA0880.2 6 bp overlap
Dlx4 3 datasets
Motif DE_36h DE_36h-Dlx4_MA0881.2 6 bp overlap
Motif DE_48h DE_48h-Dlx4_MA0881.2 6 bp overlap
Motif DE_60h DE_60h-Dlx4_MA0881.2 6 bp overlap
Dlx5 3 datasets
Motif DE_36h DE_36h-Dlx5_MA1476.3 8 bp overlap
Motif DE_48h DE_48h-Dlx5_MA1476.3 8 bp overlap
Motif DE_60h DE_60h-Dlx5_MA1476.3 8 bp overlap
EHF 3 datasets
Motif DE_36h DE_36h-EHF_MA0598.4 9 bp overlap
Motif DE_48h DE_48h-EHF_MA0598.4 9 bp overlap
Motif DE_60h DE_60h-EHF_MA0598.4 9 bp overlap
ELF3 3 datasets
Motif DE_36h DE_36h-ELF3_MA0640.3 9 bp overlap
Motif DE_48h DE_48h-ELF3_MA0640.3 9 bp overlap
Motif DE_60h DE_60h-ELF3_MA0640.3 9 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 370 bp overlap
ERG 1 dataset
ChIP Jurkat GSE49091.ERG.Jurkat 170 bp overlap
ETS1 2 datasets
ChIP GM23338 ENCFF701IZH 377 bp overlap
ChIP hESC ENCSR534VHI.ETS1.hESC 247 bp overlap
ETV1 4 datasets
Motif DE_36h DE_36h-ETV1_MA0761.3 9 bp overlap
Motif DE_48h DE_48h-ETV1_MA0761.3 9 bp overlap
Motif DE_60h DE_60h-ETV1_MA0761.3 9 bp overlap
ChIP MDA-Pca-2b GSE106624.ETV1.MDA-Pca-2b 76 bp overlap
ETV2::DRGX 1 dataset
Motif DE_48h DE_48h-ETV2DRGX_MA1940.2 12 bp overlap
ETV5::DRGX 1 dataset
Motif DE_48h DE_48h-ETV5DRGX_MA1944.2 12 bp overlap
ETV5::FOXO1 1 dataset
Motif DE_48h DE_48h-ETV5FOXO1_MA1947.2 10 bp overlap
EZH2_phosphoT487 1 dataset
ChIP neural_progenitor ENCSR656MXA.EZH2_phosphoT487.neural_progenitor 304 bp overlap
Elf5 1 dataset
Motif DE_48h DE_48h-Elf5_MA0136.4 8 bp overlap
FLI1 4 datasets
ChIP A-673_1_KRAB_GFP GSE106914.FLI1.A-673_1_KRAB_GFP 416 bp overlap
ChIP A-673_2_KRAB_eSOX2_1 GSE106914.FLI1.A-673_2_KRAB_eSOX2_1 370 bp overlap
ChIP A-673_D14 GSE129155.FLI1.A-673_D14 478 bp overlap
ChIP A-673_D17 GSE129155.FLI1.A-673_D17 404 bp overlap
FOXA1 1 dataset
ChIP ZR751_E2_TAM ERP000380.FOXA1.ZR751_E2_TAM 127 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 550 bp overlap
ChIP DE DE-FOXA2-2 550 bp overlap
GABPA 1 dataset
ChIP VCaP_ETOH GSE49091.GABPA.VCaP_ETOH 169 bp overlap
GATA1 3 datasets
Motif DE_36h DE_36h-GATA1_MA0035.5 7 bp overlap
Motif DE_48h DE_48h-GATA1_MA0035.5 7 bp overlap
Motif DE_60h DE_60h-GATA1_MA0035.5 7 bp overlap
GATA2 2 datasets
ChIP LNCaP GSE38391.GATA2.LNCaP 174 bp overlap
ChIP LNCaP GSE52725.GATA2.LNCaP 174 bp overlap
GATA4 3 datasets
ChIP DE DE-GATA4-1 548 bp overlap
ChIP DE DE-GATA4-2 507 bp overlap
ChIP foregut GSE117136.GATA4.foregut 396 bp overlap
GATA6 10 datasets
ChIP DE DE-GATA6-1 482 bp overlap
ChIP DE DE-GATA6-2 510 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 453 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 539 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 459 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 396 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 518 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 468 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 426 bp overlap
ChIP foregut GSE117136.GATA6.foregut 346 bp overlap
GBX2 3 datasets
Motif DE_36h DE_36h-GBX2_MA0890.2 6 bp overlap
Motif DE_48h DE_48h-GBX2_MA0890.2 6 bp overlap
Motif DE_60h DE_60h-GBX2_MA0890.2 6 bp overlap
HESX1 3 datasets
Motif DE_36h DE_36h-HESX1_MA0894.2 6 bp overlap
Motif DE_48h DE_48h-HESX1_MA0894.2 6 bp overlap
Motif DE_60h DE_60h-HESX1_MA0894.2 6 bp overlap
HOXA6 3 datasets
Motif DE_36h DE_36h-HOXA6_MA1497.2 7 bp overlap
Motif DE_48h DE_48h-HOXA6_MA1497.2 7 bp overlap
Motif DE_60h DE_60h-HOXA6_MA1497.2 7 bp overlap
HOXA7 3 datasets
Motif DE_36h DE_36h-HOXA7_MA1498.3 6 bp overlap
Motif DE_48h DE_48h-HOXA7_MA1498.3 6 bp overlap
Motif DE_60h DE_60h-HOXA7_MA1498.3 6 bp overlap
HOXB13 1 dataset
ChIP LNCaP GSE56288.HOXB13.LNCaP 165 bp overlap
HOXB6 3 datasets
Motif DE_36h DE_36h-HOXB6_MA1500.2 7 bp overlap
Motif DE_48h DE_48h-HOXB6_MA1500.2 7 bp overlap
Motif DE_60h DE_60h-HOXB6_MA1500.2 7 bp overlap
HOXB7 3 datasets
Motif DE_36h DE_36h-HOXB7_MA1501.2 7 bp overlap
Motif DE_48h DE_48h-HOXB7_MA1501.2 7 bp overlap
Motif DE_60h DE_60h-HOXB7_MA1501.2 7 bp overlap
HOXB8 3 datasets
Motif DE_36h DE_36h-HOXB8_MA1502.2 7 bp overlap
Motif DE_48h DE_48h-HOXB8_MA1502.2 7 bp overlap
Motif DE_60h DE_60h-HOXB8_MA1502.2 7 bp overlap
HOXD3 3 datasets
Motif DE_36h DE_36h-HOXD3_MA0912.2 8 bp overlap
Motif DE_48h DE_48h-HOXD3_MA0912.2 8 bp overlap
Motif DE_60h DE_60h-HOXD3_MA0912.2 8 bp overlap
HOXD8 3 datasets
Motif DE_36h DE_36h-HOXD8_MA0910.3 7 bp overlap
Motif DE_48h DE_48h-HOXD8_MA0910.3 7 bp overlap
Motif DE_60h DE_60h-HOXD8_MA0910.3 7 bp overlap
Hic1 3 datasets
Motif DE_36h DE_36h-Hic1_MA0739.2 8 bp overlap
Motif DE_48h DE_48h-Hic1_MA0739.2 8 bp overlap
Motif DE_60h DE_60h-Hic1_MA0739.2 8 bp overlap
Hmga1 3 datasets
Motif DE_36h DE_36h-Hmga1_MA2124.1 8 bp overlap
Motif DE_48h DE_48h-Hmga1_MA2124.1 8 bp overlap
Motif DE_60h DE_60h-Hmga1_MA2124.1 8 bp overlap
JUN 3 datasets
ChIP DE_D1 S40-DE-d1-JUN-exp2 387 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 336 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 329 bp overlap
LBX2 3 datasets
Motif DE_36h DE_36h-LBX2_MA0699.2 6 bp overlap
Motif DE_48h DE_48h-LBX2_MA0699.2 6 bp overlap
Motif DE_60h DE_60h-LBX2_MA0699.2 6 bp overlap
LHX2 3 datasets
Motif DE_36h DE_36h-LHX2_MA0700.3 6 bp overlap
Motif DE_48h DE_48h-LHX2_MA0700.3 6 bp overlap
Motif DE_60h DE_60h-LHX2_MA0700.3 6 bp overlap
MEF2A 3 datasets
Motif DE_36h DE_36h-MEF2A_MA0052.5 10 bp overlap
Motif DE_48h DE_48h-MEF2A_MA0052.5 10 bp overlap
Motif DE_60h DE_60h-MEF2A_MA0052.5 10 bp overlap
MEF2C 3 datasets
Motif DE_36h DE_36h-MEF2C_MA0497.2 11 bp overlap
Motif DE_48h DE_48h-MEF2C_MA0497.2 11 bp overlap
Motif DE_60h DE_60h-MEF2C_MA0497.2 11 bp overlap
MORC2 1 dataset
ChIP H9 GSE95374.MORC2.H9 242 bp overlap
MSX1 3 datasets
Motif DE_36h DE_36h-MSX1_MA0666.3 6 bp overlap
Motif DE_48h DE_48h-MSX1_MA0666.3 6 bp overlap
Motif DE_60h DE_60h-MSX1_MA0666.3 6 bp overlap
MSX2 3 datasets
Motif DE_36h DE_36h-MSX2_MA0708.3 6 bp overlap
Motif DE_48h DE_48h-MSX2_MA0708.3 6 bp overlap
Motif DE_60h DE_60h-MSX2_MA0708.3 6 bp overlap
MYBL2 1 dataset
ChIP A-673 GSE119971.MYBL2.A-673 277 bp overlap
Msx3 3 datasets
Motif DE_36h DE_36h-Msx3_MA0709.2 6 bp overlap
Motif DE_48h DE_48h-Msx3_MA0709.2 6 bp overlap
Motif DE_60h DE_60h-Msx3_MA0709.2 6 bp overlap
NANOG 10 datasets
ChIP GM23338 ENCFF065NZG 174 bp overlap
ChIP GM23338 ENCSR061DGF.NANOG.GM23338 385 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 459 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 550 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 228 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 550 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 550 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 449 bp overlap
ChIP hESC GSE18292.NANOG.hESC 113 bp overlap
ChIP hESC GSE20650.NANOG.hESC 151 bp overlap
NEUROD1 1 dataset
ChIP D283-Med_shNEUROD1-1579 GSE92582.NEUROD1.D283-Med_shNEUROD1-1579 223 bp overlap
NFIA 3 datasets
Motif DE_36h DE_36h-NFIA_MA0670.2 6 bp overlap
Motif DE_48h DE_48h-NFIA_MA0670.2 6 bp overlap
Motif DE_60h DE_60h-NFIA_MA0670.2 6 bp overlap
NFIX 3 datasets
Motif DE_36h DE_36h-NFIX_MA0671.2 6 bp overlap
Motif DE_48h DE_48h-NFIX_MA0671.2 6 bp overlap
Motif DE_60h DE_60h-NFIX_MA0671.2 6 bp overlap
NFYB 3 datasets
Motif DE_36h DE_36h-NFYB_MA0502.3 9 bp overlap
Motif DE_48h DE_48h-NFYB_MA0502.3 9 bp overlap
Motif DE_60h DE_60h-NFYB_MA0502.3 9 bp overlap
NIPBL 3 datasets
ChIP hESC GSE64758.NIPBL.hESC 212 bp overlap
ChIP hESC_WNT3A_ACTIVIN GSE64758.NIPBL.hESC_WNT3A_ACTIVIN 285 bp overlap
ChIP hESC_activin GSE64758.NIPBL.hESC_activin 300 bp overlap
Nobox 3 datasets
Motif DE_36h DE_36h-Nobox_MA0125.2 6 bp overlap
Motif DE_48h DE_48h-Nobox_MA0125.2 6 bp overlap
Motif DE_60h DE_60h-Nobox_MA0125.2 6 bp overlap
POU2F1::SOX2 3 datasets
Motif DE_36h DE_36h-POU2F1SOX2_MA1962.1 17 bp overlap
Motif DE_48h DE_48h-POU2F1SOX2_MA1962.1 17 bp overlap
Motif DE_60h DE_60h-POU2F1SOX2_MA1962.1 17 bp overlap
POU5F1 2 datasets
ChIP GM23338 ENCFF333SNB 311 bp overlap
ChIP hESC ENCSR264RJX.POU5F1.hESC 144 bp overlap
Pax7 1 dataset
Motif DE_48h DE_48h-Pax7_MA0680.3 10 bp overlap
Pou5f1::Sox2 3 datasets
Motif DE_36h DE_36h-Pou5f1Sox2_MA0142.1 15 bp overlap
Motif DE_48h DE_48h-Pou5f1Sox2_MA0142.1 15 bp overlap
Motif DE_60h DE_60h-Pou5f1Sox2_MA0142.1 15 bp overlap
Prdm15 1 dataset
Motif DE_48h DE_48h-Prdm15_MA1616.2 11 bp overlap
RAX 3 datasets
Motif DE_36h DE_36h-RAX_MA0718.2 6 bp overlap
Motif DE_48h DE_48h-RAX_MA0718.2 6 bp overlap
Motif DE_60h DE_60h-RAX_MA0718.2 6 bp overlap
Rhox11 3 datasets
Motif DE_36h DE_36h-Rhox11_MA0629.2 9 bp overlap
Motif DE_48h DE_48h-Rhox11_MA0629.2 9 bp overlap
Motif DE_60h DE_60h-Rhox11_MA0629.2 9 bp overlap
SIX2 2 datasets
ChIP HEK GSE73865.SIX2.HEK 339 bp overlap
ChIP kidney_fetal_17w GSE75948.SIX2.kidney_fetal_17w 332 bp overlap
SMAD2 1 dataset
ChIP endoderm GSE29422.SMAD2.endoderm 173 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 513 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 414 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 408 bp overlap
SMAD2_3 4 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 381 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 349 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 472 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 445 bp overlap
SMAD3 2 datasets
ChIP BG03 GSE21614.SMAD3.BG03 192 bp overlap
ChIP endoderm GSE29422.SMAD3.endoderm 220 bp overlap
SMAD4 1 dataset
ChIP endoderm GSE29422.SMAD4.endoderm 164 bp overlap
SMARCA4 1 dataset
ChIP hiPSC GSE124903.SMARCA4.hiPSC 537 bp overlap
SMARCB1 1 dataset
ChIP hiPSC GSE124903.SMARCB1.hiPSC 310 bp overlap
SMARCC1 3 datasets
ChIP SK-N-MC GSE94275.SMARCC1.SK-N-MC 171 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 203 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 219 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 220 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 349 bp overlap
SOX2 1 dataset
ChIP hiPSC GSE56567.SOX2.hiPSC 178 bp overlap
Stat6 3 datasets
Motif DE_36h DE_36h-Stat6_MA0520.2 10 bp overlap
Motif DE_48h DE_48h-Stat6_MA0520.2 10 bp overlap
Motif DE_60h DE_60h-Stat6_MA0520.2 10 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 294 bp overlap
ZKSCAN1 3 datasets
Motif DE_36h DE_36h-ZKSCAN1_MA1585.2 9 bp overlap
Motif DE_48h DE_48h-ZKSCAN1_MA1585.2 9 bp overlap
Motif DE_60h DE_60h-ZKSCAN1_MA1585.2 9 bp overlap
ZNF143 3 datasets
Motif DE_36h DE_36h-ZNF143_MA0088.2 16 bp overlap
Motif DE_48h DE_48h-ZNF143_MA0088.2 16 bp overlap
Motif DE_60h DE_60h-ZNF143_MA0088.2 16 bp overlap
ZNF24 1 dataset
Motif DE_48h DE_48h-ZNF24_MA1124.1 13 bp overlap
ZNF416 3 datasets
Motif DE_36h DE_36h-ZNF416_MA1979.2 10 bp overlap
Motif DE_48h DE_48h-ZNF416_MA1979.2 10 bp overlap
Motif DE_60h DE_60h-ZNF416_MA1979.2 10 bp overlap
ZNF558 1 dataset
Motif DE_48h DE_48h-ZNF558_MA2335.1 29 bp overlap
ZNF85 3 datasets
Motif DE_36h DE_36h-ZNF85_MA1720.2 12 bp overlap
Motif DE_48h DE_48h-ZNF85_MA1720.2 12 bp overlap
Motif DE_60h DE_60h-ZNF85_MA1720.2 12 bp overlap
Znf423 3 datasets
Motif DE_36h DE_36h-Znf423_MA0116.1 15 bp overlap
Motif DE_48h DE_48h-Znf423_MA0116.1 15 bp overlap
Motif DE_60h DE_60h-Znf423_MA0116.1 15 bp overlap
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