chr12 : 42,804,763 42,805,443
680 bp 46 TFs 0 linked genes
This 680 bp open chromatin element has no linked target genes and is bound by 46 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr12:42,799,763 – 42,810,443
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
46 transcription factors
Source
Cell type
AR 1 dataset
ChIP LNCaP GSE80256.AR.LNCaP 273 bp overlap
Atoh1 1 dataset
Motif DE_48h DE_48h-Atoh1_MA0461.3 8 bp overlap
BRD3 1 dataset
ChIP H-1_DE GSE126661.BRD3.H-1_DE 479 bp overlap
BRD4 1 dataset
ChIP hESC GSE33281.BRD4.hESC 61 bp overlap
CEBPB 1 dataset
ChIP MCF-7 ENCSR000BSR.CEBPB.MCF-7 140 bp overlap
CTCF 106 datasets
ChIP Caco-2 ENCFF934QYS 217 bp overlap
Motif DE_60h DE_60h-CTCF_MA0139.2 15 bp overlap
ChIP GM04648 GSE148179.CTCF.GM04648 185 bp overlap
ChIP GM06077 GSE148179.CTCF.GM06077 165 bp overlap
ChIP GM09236__B-lymphocytes GSE111170.CTCF.GM09236__B-lymphocytes 131 bp overlap
ChIP GM10266 ENCFF241YYF 177 bp overlap
ChIP GM12866 ENCSR000DRF.CTCF.GM12866 111 bp overlap
ChIP GM12871 ENCSR000DRL.CTCF.GM12871 204 bp overlap
ChIP GM12878 ENCFF217EAX 357 bp overlap
ChIP GM23338 ENCFF531QOI 425 bp overlap
ChIP GM23338 ENCFF772DML 201 bp overlap
ChIP H1 ENCFF414GZI 217 bp overlap
ChIP H1 ENCFF764RHO 277 bp overlap
ChIP H9 ENCFF152GTF 198 bp overlap
ChIP HCT-116 ENCSR240PRQ.CTCF.HCT-116 209 bp overlap
ChIP HCT-116 ENCSR000BSE.CTCF.HCT-116 186 bp overlap
ChIP HEC-1-B_R1-mutation GSE140868.CTCF.HEC-1-B_R1-mutation 91 bp overlap
ChIP HEC-1-B_WT GSE140868.CTCF.HEC-1-B_WT 320 bp overlap
ChIP HEC-1-B_a12-CBS-deletion GSE140868.CTCF.HEC-1-B_a12-CBS-deletion 69 bp overlap
ChIP HeLa GSE126990.CTCF.HeLa 216 bp overlap
ChIP HeLa-Kyoto GSE138405.CTCF.HeLa-Kyoto 216 bp overlap
ChIP HeLa-Kyoto_WAPL-depleted GSE102884.CTCF.HeLa-Kyoto_WAPL-depleted 166 bp overlap
ChIP HeLa-S3 ENCFF565UFR 161 bp overlap
ChIP ID00016 GSE76922.CTCF.ID00016 296 bp overlap
ChIP K-562_MonoC GSE137216.CTCF.K-562_MonoC 282 bp overlap
ChIP Kelly_resistant GSE103030.CTCF.Kelly_resistant 147 bp overlap
ChIP Kelly_sensitive GSE103030.CTCF.Kelly_sensitive 111 bp overlap
ChIP MCF-10A GSE98551.CTCF.MCF-10A 320 bp overlap
ChIP MCF-10AT1 GSE98551.CTCF.MCF-10AT1 241 bp overlap
ChIP MCF-7 ENCFF139NQI 277 bp overlap
ChIP MCF-7 ENCFF162GNE 245 bp overlap
ChIP MCF-7 ENCFF198DQX 231 bp overlap
ChIP MCF-7 ENCFF210JUZ 421 bp overlap
ChIP MCF-7 ENCFF414SZG 191 bp overlap
ChIP MCF-7 ENCFF424NQR 191 bp overlap
ChIP MCF-7 ENCFF494VXA 231 bp overlap
ChIP MCF-7 ENCFF844STM 191 bp overlap
ChIP MCF-7 ENCFF954TUV 205 bp overlap
ChIP MCF-7 ENCSR560BUE.CTCF.MCF-7 404 bp overlap
ChIP MCF-7 GSE137216.CTCF.MCF-7 174 bp overlap
ChIP MCF-7 ENCSR000DWH.CTCF.MCF-7 211 bp overlap
ChIP MCF-7 ENCSR000AHD.CTCF.MCF-7 200 bp overlap
ChIP MCF-7 ENCSR000DMR.CTCF.MCF-7 175 bp overlap
ChIP MCF-7 ENCSR000DMS.CTCF.MCF-7 136 bp overlap
ChIP MCF-7 ERP000380.CTCF.MCF-7 116 bp overlap
ChIP MCF-7 GSE70764.CTCF.MCF-7 119 bp overlap
ChIP MCF-7L_t0 GSE108787.CTCF.MCF-7L_t0 397 bp overlap
ChIP MCF-7L_t1 GSE108787.CTCF.MCF-7L_t1 259 bp overlap
ChIP MCF-7L_t24 GSE108787.CTCF.MCF-7L_t24 320 bp overlap
ChIP MCF-7_E2 ERP000380.CTCF.MCF-7_E2 130 bp overlap
ChIP MCF-7_TAM ERP000380.CTCF.MCF-7_TAM 143 bp overlap
ChIP MCF-7_TAM ERP000783.CTCF.MCF-7_TAM 111 bp overlap
ChIP OCI-Ly1 ENCSR072EUE.CTCF.OCI-Ly1 195 bp overlap
ChIP OCI-Ly3 ENCSR756ZKG.CTCF.OCI-Ly3 191 bp overlap
ChIP OVCAR-8 GSE70764.CTCF.OVCAR-8 162 bp overlap
ChIP PC-3 ENCFF487TUI 485 bp overlap
ChIP PC-3 ENCSR359LOD.CTCF.PC-3 313 bp overlap
ChIP PC-9 ENCFF539ULB 531 bp overlap
ChIP RH4 GSE83726.CTCF.RH4 210 bp overlap
ChIP RWPE-2 ENCSR856JJB.CTCF.RWPE-2 508 bp overlap
ChIP RWPE2 ENCFF911IEE 680 bp overlap
ChIP T-47D GSE111923.CTCF.T-47D 284 bp overlap
ChIP T-47D_NaCl-isotonic GSE111923.CTCF.T-47D_NaCl-isotonic 397 bp overlap
ChIP T-47D_NaCl-isotonic-triptolide GSE111923.CTCF.T-47D_NaCl-isotonic-triptolide 312 bp overlap
ChIP THP-1_Pam3csk-000m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-000m-Flavo-000m 239 bp overlap
ChIP THP-1_Pam3csk-000m-Flavo-240m GSE103477.CTCF.THP-1_Pam3csk-000m-Flavo-240m 233 bp overlap
ChIP THP-1_siCtrl-NS1-Pam3csk-4h GSE103477.CTCF.THP-1_siCtrl-NS1-Pam3csk-4h 249 bp overlap
ChIP THP-1_siNIPBL-NS1-Pam3csk-7h-Flavo-3h GSE103477.CTCF.THP-1_siNIPBL-NS1-Pam3csk-7h-Flavo-3h 196 bp overlap
ChIP WA01 ENCSR000DLK.CTCF.WA01 113 bp overlap
ChIP WERI-Rb-1 ENCFF349QKF 231 bp overlap
ChIP WERI-Rb-1 ENCSR000DXW.CTCF.WERI-Rb-1 221 bp overlap
ChIP ZR751 ERP000783.CTCF.ZR751 135 bp overlap
ChIP bonchial_epithelial ENCSR000DXI.CTCF.bonchial_epithelial 223 bp overlap
ChIP bronchial epithelial cell ENCFF500SEA 271 bp overlap
ChIP choroid plexus epithelial cell ENCFF407YNR 277 bp overlap
ChIP endodermal cell ENCFF471YCZ 276 bp overlap
ChIP endothelial_brain-microvascular ENCSR000DTA.CTCF.endothelial_brain-microvascular 139 bp overlap
ChIP epithelial cell of esophagus ENCFF946GGT 305 bp overlap
ChIP epithelial cell of prostate ENCFF086GTI 336 bp overlap
ChIP epithelial cell of proximal tubule ENCFF763ZKS 331 bp overlap
ChIP epithelial_esophagus ENCSR000DTR.CTCF.epithelial_esophagus 244 bp overlap
ChIP epithelial_mammary ENCSR000DUS.CTCF.epithelial_mammary 224 bp overlap
ChIP epithelial_proximal_tubule ENCSR000DXD.CTCF.epithelial_proximal_tubule 205 bp overlap
ChIP esophagus squamous epithelium ENCFF037IYT 397 bp overlap
ChIP esophagus_squamous-epithelium ENCSR450FRI.CTCF.esophagus_squamous-epithelium 240 bp overlap
ChIP heart_left-ventricle ENCSR791AYW.CTCF.heart_left-ventricle 203 bp overlap
ChIP heart_left-ventricle ENCSR544APK.CTCF.heart_left-ventricle 273 bp overlap
ChIP hiPSC_HUES9 GSE106870.CTCF.hiPSC_HUES9 167 bp overlap
ChIP hiPSC_IB12 GSE106870.CTCF.hiPSC_IB12 132 bp overlap
ChIP hiPSC_IB7 GSE106870.CTCF.hiPSC_IB7 151 bp overlap
ChIP hiPSC_IID12 GSE106870.CTCF.hiPSC_IID12 168 bp overlap
ChIP hiPSC_IV8 GSE106870.CTCF.hiPSC_IV8 194 bp overlap
ChIP hiPSC_parental-line GSE106870.CTCF.hiPSC_parental-line 251 bp overlap
ChIP keratinocyte ENCFF046PBT 65 bp overlap
ChIP keratinocyte ENCFF291YDC 53 bp overlap
ChIP keratinocyte ENCFF667ULX 325 bp overlap
ChIP keratinocyte ENCSR000DWX.CTCF.keratinocyte 363 bp overlap
ChIP keratinocyte GSE154221.CTCF.keratinocyte 351 bp overlap
ChIP keratinocyte ENCSR000ALJ.CTCF.keratinocyte 192 bp overlap
ChIP keratinocyte ENCSR000DNC.CTCF.keratinocyte 192 bp overlap
ChIP mammary epithelial cell ENCFF164SPU 265 bp overlap
ChIP mammary epithelial cell ENCFF873ERE 271 bp overlap
ChIP mammary epithelial cell ENCFF873ERE 232 bp overlap
ChIP primary-epidermal-keratinocyte_diff_d3 GSE84657.CTCF.primary-epidermal-keratinocyte_diff_d3 170 bp overlap
ChIP primary-epidermal-keratinocyte_diff_d6 GSE84657.CTCF.primary-epidermal-keratinocyte_diff_d6 222 bp overlap
ChIP prostate_epithelial ENCSR196HOM.CTCF.prostate_epithelial 522 bp overlap
Cebpa 3 datasets
ChIP BLaER1 ENCFF093OYK 251 bp overlap
ChIP BLaER1 ENCFF364PUR 327 bp overlap
ChIP BLaER1 ENCFF896HSY 358 bp overlap
DPRX 1 dataset
Motif DE_60h DE_60h-DPRX_MA1480.2 9 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 132 bp overlap
ESR1 11 datasets
ChIP Ishikawa_E2-1h GSE129803.ESR1.Ishikawa_E2-1h 226 bp overlap
ChIP MCF-7 GSE119057.ESR1.MCF-7 208 bp overlap
ChIP MCF-7_E2 GSE102410.ESR1.MCF-7_E2 169 bp overlap
ChIP MCF-7_ER_t10 GSE119057.ESR1.MCF-7_ER_t10 240 bp overlap
ChIP MCF-7_ER_t20 GSE119057.ESR1.MCF-7_ER_t20 238 bp overlap
ChIP MCF-7_ER_t30 GSE119057.ESR1.MCF-7_ER_t30 202 bp overlap
ChIP MCF-7_ER_t40 GSE119057.ESR1.MCF-7_ER_t40 217 bp overlap
ChIP MCF-7_ER_t50 GSE119057.ESR1.MCF-7_ER_t50 230 bp overlap
ChIP MCF-7_ER_t60 GSE119057.ESR1.MCF-7_ER_t60 177 bp overlap
ChIP MCF-7_ER_t80 GSE119057.ESR1.MCF-7_ER_t80 220 bp overlap
ChIP MCF-7_ER_t90 GSE119057.ESR1.MCF-7_ER_t90 190 bp overlap
FIGLA 1 dataset
Motif DE_60h DE_60h-FIGLA_MA0820.2 6 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 349 bp overlap
ChIP DE DE-FOXA2-2 379 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 310 bp overlap
ChIP DE DE-GATA4-2 349 bp overlap
GATA6 5 datasets
ChIP DE DE-GATA6-2 268 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 312 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 274 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 419 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 342 bp overlap
HDAC3 1 dataset
ChIP RH4_DMSO-6H GSE116344.HDAC3.RH4_DMSO-6H 193 bp overlap
MAX 2 datasets
ChIP H1 ENCFF914VQY 357 bp overlap
ChIP WA01 ENCSR000EUP.MAX.WA01 132 bp overlap
MED1 2 datasets
ChIP MCF-7_SHRARS GSE60270.MED1.MCF-7_SHRARS 483 bp overlap
ChIP RH4 GSE83726.MED1.RH4 537 bp overlap
MYB 1 dataset
Motif DE_48h DE_48h-MYB_MA0100.4 6 bp overlap
NANOG 6 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 328 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 200 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 469 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 295 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 219 bp overlap
ChIP hESC GSE18292.NANOG.hESC 127 bp overlap
NFIA 1 dataset
Motif DE_48h DE_48h-NFIA_MA0670.2 6 bp overlap
NFIX 1 dataset
Motif DE_48h DE_48h-NFIX_MA0671.2 6 bp overlap
PRDM14 1 dataset
ChIP hESC GSE22767.PRDM14.hESC 238 bp overlap
Ptf1A 1 dataset
Motif DE_60h DE_60h-Ptf1A_MA1620.2 8 bp overlap
RAD21 25 datasets
ChIP A-549 ENCSR000BUC.RAD21.A-549 155 bp overlap
ChIP H1 ENCFF698EWO 97 bp overlap
ChIP H1 ENCFF967OJF 245 bp overlap
ChIP HAP1 GSE152721.RAD21.HAP1 207 bp overlap
ChIP HCT-116 ENCSR000BSB.RAD21.HCT-116 210 bp overlap
ChIP HCT-116_RAD21-mAC GSE104888.RAD21.HCT-116_RAD21-mAC 254 bp overlap
ChIP HCT116 ENCFF568PEO 311 bp overlap
ChIP Ishikawa ENCFF570JVV 225 bp overlap
ChIP Ishikawa ENCSR000BTU.RAD21.Ishikawa 199 bp overlap
ChIP K-562 ENCSR000BKV.RAD21.K-562 109 bp overlap
ChIP K-562_RF2-insertion GSE140868.RAD21.K-562_RF2-insertion 195 bp overlap
ChIP MCF-7 ENCFF694KOM 337 bp overlap
ChIP MCF-7 ENCFF724VCQ 257 bp overlap
ChIP MCF-7 ENCSR703TNG.RAD21.MCF-7 245 bp overlap
ChIP MCF-7 ENCSR000BTQ.RAD21.MCF-7 156 bp overlap
ChIP MCF-7 GSE72082.RAD21.MCF-7 147 bp overlap
ChIP MCF-7 GSE137216.RAD21.MCF-7 194 bp overlap
ChIP MCF-7 ERP000209.RAD21.MCF-7 182 bp overlap
ChIP MCF-7_E2 ERP000209.RAD21.MCF-7_E2 164 bp overlap
ChIP RH4 GSE83726.RAD21.RH4 222 bp overlap
ChIP SLK_Ctrl GSE138105.RAD21.SLK_Ctrl 351 bp overlap
ChIP THP-1_Pam3csk-000m-Flavo-240m GSE103477.RAD21.THP-1_Pam3csk-000m-Flavo-240m 273 bp overlap
ChIP WA09 GSE105028.RAD21.WA09 254 bp overlap
ChIP hiPSC_IIA12 GSE106870.RAD21.hiPSC_IIA12 183 bp overlap
ChIP hiPSC_failed-genome-editing GSE106870.RAD21.hiPSC_failed-genome-editing 181 bp overlap
Rarg 1 dataset
Motif DE_60h DE_60h-Rarg_MA0860.1 17 bp overlap
SMAD1 1 dataset
ChIP BG03 GSE36578.SMAD1.BG03 133 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 459 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 680 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 579 bp overlap
SMAD2_3 4 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 374 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 587 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 284 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 300 bp overlap
SMC1 2 datasets
ChIP HCAEC GSE101921.SMC1.HCAEC 284 bp overlap
ChIP MCF-10A GSE101921.SMC1.MCF-10A 322 bp overlap
SMC1A 2 datasets
ChIP MCF-7 GSE76893.SMC1A.MCF-7 231 bp overlap
ChIP primary-epidermal-keratinocyte_diff_d6 GSE84657.SMC1A.primary-epidermal-keratinocyte_diff_d6 340 bp overlap
SMC3 1 dataset
ChIP GP5D GSE51234.SMC3.GP5D 335 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 382 bp overlap
SOX2 1 dataset
ChIP hiPSC GSE56567.SOX2.hiPSC 178 bp overlap
SREBF2 1 dataset
Motif DE_60h DE_60h-SREBF2_MA0596.1 10 bp overlap
STAG1 4 datasets
ChIP HeLa GSE126990.STAG1.HeLa 316 bp overlap
ChIP HeLa-Kyoto GSE138405.STAG1.HeLa-Kyoto 316 bp overlap
ChIP MCF-7 ERP000209.STAG1.MCF-7 239 bp overlap
ChIP MCF-7_E2 ERP000209.STAG1.MCF-7_E2 155 bp overlap
T 1 dataset
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 253 bp overlap
TEAD4 1 dataset
ChIP hMSC-TERT4 GSE140782.TEAD4.hMSC-TERT4 205 bp overlap
TFAP2C 1 dataset
ChIP HCC1954 GSE126897.TFAP2C.HCC1954 107 bp overlap
THRA 1 dataset
Motif DE_60h DE_60h-THRA_MA1969.2 18 bp overlap
THRB 1 dataset
Motif DE_60h DE_60h-THRB_MA1576.2 18 bp overlap
USF1 2 datasets
ChIP H1 ENCFF090WVU 225 bp overlap
ChIP WA01 ENCSR000BIU.USF1.WA01 216 bp overlap
ZEB1 1 dataset
Motif DE_60h DE_60h-ZEB1_MA0103.4 6 bp overlap
ZNF143 1 dataset
ChIP MCF-7 GSE76454.ZNF143.MCF-7 166 bp overlap
ZNF317 2 datasets
Motif DE_60h DE_60h-ZNF317_MA1593.2 8 bp overlap
Motif DE_60h DE_60h-ZNF317_MA1593.2 8 bp overlap
Zfp809 1 dataset
Motif DE_60h DE_60h-Zfp809_MA2125.1 9 bp overlap