chr12 : 24,888,740 – 24,889,719
979 bp 50 TFs 1 linked gene
This 979 bp open chromatin element is linked to BCAT1 and is bound by 50 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
BCAT1 60.1 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr12:24,883,740 – 24,894,719
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
50 transcription factors
Source
Cell type
BARHL1 1 dataset
Motif DE_48h DE_48h-BARHL1_MA0877.4 6 bp overlap
BARHL2 1 dataset
Motif DE_48h DE_48h-BARHL2_MA0635.2 6 bp overlap
BRD2 1 dataset
ChIP HCC1806_NTsiRNA GSE116879.BRD2.HCC1806_NTsiRNA 325 bp overlap
BRD4 2 datasets
ChIP NMC24335 GSE96775.BRD4.NMC24335 130 bp overlap
ChIP SK-N-BE2-C_Naive-veh GSE107706.BRD4.SK-N-BE2-C_Naive-veh 250 bp overlap
CREBBP 1 dataset
ChIP keratinocyte_KLF3i GSE140991.CREBBP.keratinocyte_KLF3i 205 bp overlap
CTCF 2 datasets
ChIP Panc1 ENCFF056JQX 671 bp overlap
ChIP Panc1 ENCFF056JQX 705 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF460KDD 375 bp overlap
ELF1 1 dataset
ChIP K-562 ENCSR000BMD.ELF1.K-562 160 bp overlap
ELF3 2 datasets
ChIP PDAC GSE64557.ELF3.PDAC 979 bp overlap
ChIP PDAC_SHCTR GSE64557.ELF3.PDAC_SHCTR 979 bp overlap
ERG 2 datasets
ChIP aortic-endothelial-cell_D19 GSE139377.ERG.aortic-endothelial-cell_D19 159 bp overlap
ChIP aortic-endothelial-cell_D49 GSE139377.ERG.aortic-endothelial-cell_D49 167 bp overlap
ESR1 2 datasets
ChIP primary-endometrium-cancer_E1_DSG GSE114737.ESR1.primary-endometrium-cancer_E1_DSG 104 bp overlap
ChIP primary-endometrium-cancer_E1_DSG GSE114737.ESR1.primary-endometrium-cancer_E1_DSG 456 bp overlap
FLI1 1 dataset
ChIP HUVEC-C GSE109695.FLI1.HUVEC-C 125 bp overlap
FOXA1 9 datasets
ChIP CFPAC-1 GSE119930.FOXA1.CFPAC-1 476 bp overlap
ChIP CFPAC-1_FOXA1-KO GSE119930.FOXA1.CFPAC-1_FOXA1-KO 328 bp overlap
ChIP CFPAC-1_FOXA2-KO GSE119930.FOXA1.CFPAC-1_FOXA2-KO 939 bp overlap
ChIP PDAC GSE64557.FOXA1.PDAC 979 bp overlap
ChIP PDAC_KOKLF5 GSE64557.FOXA1.PDAC_KOKLF5 421 bp overlap
ChIP PDAC_SHCTR GSE64557.FOXA1.PDAC_SHCTR 947 bp overlap
ChIP ZR-75-1_estrogen_ab2 GSE112969.FOXA1.ZR-75-1_estrogen_ab2 363 bp overlap
ChIP ZR-75-1_vehicle_ab2 GSE112969.FOXA1.ZR-75-1_vehicle_ab2 268 bp overlap
ChIP ZR751_E2_TAM ERP000380.FOXA1.ZR751_E2_TAM 123 bp overlap
FOXA2 7 datasets
ChIP CFPAC-1 GSE119930.FOXA2.CFPAC-1 305 bp overlap
ChIP CFPAC-1_EV GSE119930.FOXA2.CFPAC-1_EV 929 bp overlap
ChIP CFPAC-1_HNF1B-KO GSE119930.FOXA2.CFPAC-1_HNF1B-KO 234 bp overlap
ChIP CFPAC-1_HOXB8-OE GSE119930.FOXA2.CFPAC-1_HOXB8-OE 275 bp overlap
ChIP CFPAC-1_HOXB8-OE GSE119930.FOXA2.CFPAC-1_HOXB8-OE 339 bp overlap
ChIP DE DE-FOXA2-1 955 bp overlap
ChIP DE DE-FOXA2-2 973 bp overlap
FOXB1 1 dataset
Motif DE_48h DE_48h-FOXB1_MA0845.1 11 bp overlap
FOXC1 1 dataset
Motif DE_48h DE_48h-FOXC1_MA0032.2 11 bp overlap
Foxl2 1 dataset
Motif DE_48h DE_48h-Foxl2_MA1607.2 10 bp overlap
GATA3 2 datasets
ChIP BE2C GSE65664.GATA3.BE2C 199 bp overlap
ChIP SK-N-BE2-C GSE94822.GATA3.SK-N-BE2-C 278 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 914 bp overlap
ChIP DE DE-GATA4-2 958 bp overlap
GATA6 11 datasets
ChIP DE DE-GATA6-1 890 bp overlap
ChIP DE DE-GATA6-2 905 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 873 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 507 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 644 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 415 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 442 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 516 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 864 bp overlap
ChIP HUG1N GSE51936.GATA6.HUG1N 292 bp overlap
ChIP HUG1N GSE51936.GATA6.HUG1N 269 bp overlap
GRHL2 1 dataset
ChIP HBE GSE46194.GRHL2.HBE 193 bp overlap
HAND2 1 dataset
ChIP SK-N-BE2-C GSE94822.HAND2.SK-N-BE2-C 447 bp overlap
ISL1 1 dataset
ChIP SK-N-BE2-C GSE94822.ISL1.SK-N-BE2-C 367 bp overlap
JUN 3 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 298 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 366 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 394 bp overlap
KDM1A 1 dataset
ChIP SH-SY5Y_B3 GSE58258.KDM1A.SH-SY5Y_B3 229 bp overlap
KLF4 2 datasets
ChIP BJ_INDUCED GSE36570.KLF4.BJ_INDUCED 112 bp overlap
ChIP HAP1 GSE130417.KLF4.HAP1 248 bp overlap
KLF6 1 dataset
ChIP PDAC GSE64557.KLF6.PDAC 625 bp overlap
MED1 1 dataset
ChIP HUVEC-C_siERG GSE124892.MED1.HUVEC-C_siERG 306 bp overlap
MEIS1 1 dataset
ChIP CHRF28811 ERR063469.MEIS1.CHRF28811 238 bp overlap
MEIS2 1 dataset
ChIP K-562 ENCSR851BNE.MEIS2.K-562 222 bp overlap
MYCN 1 dataset
ChIP LA-N-5 GSE138295.MYCN.LA-N-5 273 bp overlap
NUTM1 2 datasets
ChIP NMC24335 GSE96775.NUTM1.NMC24335 434 bp overlap
ChIP NMC24335 GSE96775.NUTM1.NMC24335 453 bp overlap
PAX8 1 dataset
Motif DE_48h DE_48h-PAX8_MA2094.1 16 bp overlap
PBX2 2 datasets
ChIP K-562 ENCSR263DFP.PBX2.K-562 266 bp overlap
ChIP K562 ENCFF286KMN 384 bp overlap
PDX1 1 dataset
ChIP hiPSC GSE125768.PDX1.hiPSC 185 bp overlap
POU2F1 2 datasets
ChIP 22Rv1_DHT GSE123565.POU2F1.22Rv1_DHT 485 bp overlap
ChIP 22Rv1_Veh GSE123565.POU2F1.22Rv1_Veh 427 bp overlap
POU5F1 3 datasets
Motif DE_48h DE_48h-POU5F1_MA1115.2 7 bp overlap
ChIP DE_D1 DED1-OCT4_Batch_II 260 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 804 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 268 bp overlap
RELA 6 datasets
ChIP aortic-endothelial-cell_IL1B_D14 GSE139377.RELA.aortic-endothelial-cell_IL1B_D14 213 bp overlap
ChIP aortic-endothelial-cell_IL1B_D2 GSE139377.RELA.aortic-endothelial-cell_IL1B_D2 255 bp overlap
ChIP aortic-endothelial-cell_IL1B_D21 GSE139377.RELA.aortic-endothelial-cell_IL1B_D21 167 bp overlap
ChIP aortic-endothelial-cell_IL1B_D31 GSE139377.RELA.aortic-endothelial-cell_IL1B_D31 217 bp overlap
ChIP aortic-endothelial-cell_IL1B_D47 GSE139377.RELA.aortic-endothelial-cell_IL1B_D47 163 bp overlap
ChIP aortic-endothelial-cell_IL1B_D7 GSE139377.RELA.aortic-endothelial-cell_IL1B_D7 143 bp overlap
SMAD2 2 datasets
ChIP endoderm GSE29422.SMAD2.endoderm 283 bp overlap
ChIP hESC_YAP-_activinA_15h GSE99202.SMAD2.hESC_YAP-_activinA_15h 410 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 486 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 897 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 750 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 645 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 895 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 768 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 613 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 361 bp overlap
SMAD3 1 dataset
ChIP endoderm GSE29422.SMAD3.endoderm 157 bp overlap
SMAD4 1 dataset
ChIP endoderm GSE29422.SMAD4.endoderm 211 bp overlap
SMARCC1 1 dataset
ChIP DE_D1 S15-DE-d1-BAF155-exp1 386 bp overlap
SOX11 1 dataset
ChIP GRANT-A519 GSE52146.SOX11.GRANT-A519 96 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 274 bp overlap
TFAP2B 1 dataset
ChIP SK-N-SH ENCFF869XXQ 380 bp overlap
YY1 1 dataset
ChIP SK-N-SH ENCSR000BLZ.YY1.SK-N-SH 160 bp overlap
ZNF532 2 datasets
ChIP NMC24335 GSE96775.ZNF532.NMC24335 293 bp overlap
ChIP NMC24335 GSE96775.ZNF532.NMC24335 279 bp overlap
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