chr12 : 10,098,859 – 10,099,139
280 bp 42 TFs 1 linked gene
This 280 bp open chromatin element is linked to CLEC1A and is bound by 42 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
CLEC1A at TSS At TSS Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr12:10,093,859 – 10,104,139
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
42 transcription factors
Source
Cell type
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 146 bp overlap
BCOR 1 dataset
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 180 bp overlap
BRD4 1 dataset
ChIP HUVEC-C_TNF GSE53998.BRD4.HUVEC-C_TNF 280 bp overlap
CDK8 3 datasets
ChIP myometrium_PT1063 GSE128230.CDK8.myometrium_PT1063 244 bp overlap
ChIP myometrium_PT848 GSE128230.CDK8.myometrium_PT848 73 bp overlap
ChIP myometrium_PT916 GSE128230.CDK8.myometrium_PT916 96 bp overlap
CHD7 1 dataset
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 176 bp overlap
CTCF 3 datasets
ChIP anterior-temporal-cortex_adult GSE116825.CTCF.anterior-temporal-cortex_adult 69 bp overlap
ChIP heart_left-ventricle ENCSR544APK.CTCF.heart_left-ventricle 228 bp overlap
ChIP hiPSC_failed-genome-editing GSE106870.CTCF.hiPSC_failed-genome-editing 189 bp overlap
CTNNB1 1 dataset
ChIP hiPSC_D2 GSE132532.CTNNB1.hiPSC_D2 144 bp overlap
Cebpa 4 datasets
ChIP BLaER1 ENCFF262VBH 57 bp overlap
ChIP BLaER1 ENCFF274GAT 230 bp overlap
ChIP BLaER1 ENCFF364PUR 198 bp overlap
ChIP BLaER1 ENCFF460KDD 227 bp overlap
EP300 2 datasets
ChIP tibial nerve ENCFF346AYA 269 bp overlap
ChIP upper lobe of left lung ENCFF024QBJ 169 bp overlap
ERG 1 dataset
ChIP HUVEC-C GSE124891.ERG.HUVEC-C 144 bp overlap
ESR1 5 datasets
ChIP Ishikawa_E2-1h GSE129803.ESR1.Ishikawa_E2-1h 267 bp overlap
ChIP Ishikawa_siETV4-72h GSE129803.ESR1.Ishikawa_siETV4-72h 129 bp overlap
ChIP Ishikawa_siNTC-96h GSE129803.ESR1.Ishikawa_siNTC-96h 182 bp overlap
ChIP MCF-7_E2-ICI GSE67295.ESR1.MCF-7_E2-ICI 171 bp overlap
ChIP MDA-MB-134-VI_ESTROGEN GSE51022.ESR1.MDA-MB-134-VI_ESTROGEN 95 bp overlap
ETS1 4 datasets
ChIP HUVEC-C_12h GSE93030.ETS1.HUVEC-C_12h 113 bp overlap
ChIP HUVEC-C_VEGF_12H GSE41166.ETS1.HUVEC-C_VEGF_12H 250 bp overlap
ChIP HUVEC-C_VEGF_12h GSE109625.ETS1.HUVEC-C_VEGF_12h 113 bp overlap
ChIP HUVEC-C_VEGF_4H GSE41166.ETS1.HUVEC-C_VEGF_4H 173 bp overlap
EZH2 3 datasets
ChIP DND41 ENCSR000ASW.EZH2.DND41 280 bp overlap
ChIP HCT-116 ENCSR046HGP.EZH2.HCT-116 229 bp overlap
ChIP SU-DHL-5 GSE45982.EZH2.SU-DHL-5 78 bp overlap
FOS 1 dataset
ChIP myometrium_PT916 GSE128230.FOS.myometrium_PT916 63 bp overlap
FOXA1 1 dataset
ChIP breast-cancer_heregulin GSE101407.FOXA1.breast-cancer_heregulin 152 bp overlap
GATA2 1 dataset
ChIP ME-1_CBFB-MYH11-KD GSE117138.GATA2.ME-1_CBFB-MYH11-KD 156 bp overlap
GTF3C2 1 dataset
ChIP H9 GSE94418.GTF3C2.H9 203 bp overlap
HNRNPH1 2 datasets
ChIP Hep-G2 ENCSR066FXN.HNRNPH1.Hep-G2 198 bp overlap
ChIP Hep-G2 GSE120104.HNRNPH1.Hep-G2 198 bp overlap
MED1 1 dataset
ChIP HUVEC-C_siCTL GSE124892.MED1.HUVEC-C_siCTL 124 bp overlap
MYC 3 datasets
ChIP U2OS_Doxy GSE44672.MYC.U2OS_Doxy 79 bp overlap
ChIP U2OS_Doxy GSE77356.MYC.U2OS_Doxy 81 bp overlap
ChIP endothelial_umbilical-vein ENCSR000DLU.MYC.endothelial_umbilical-vein 78 bp overlap
NFATC1 2 datasets
ChIP HUVEC-C GSE49428.NFATC1.HUVEC-C 280 bp overlap
ChIP HUVEC-C_VEGF GSE49428.NFATC1.HUVEC-C_VEGF 280 bp overlap
NR3C1 1 dataset
ChIP A-549 ENCSR000BHE.NR3C1.A-549 190 bp overlap
POLR2A 54 datasets
ChIP H1 ENCFF566JSR 280 bp overlap
ChIP adrenal gland ENCFF843OBJ 280 bp overlap
ChIP body of pancreas ENCFF501FEC 230 bp overlap
ChIP body of pancreas ENCFF675RCN 230 bp overlap
ChIP body of pancreas ENCFF727UBE 280 bp overlap
ChIP breast epithelium ENCFF045XXN 280 bp overlap
ChIP breast epithelium ENCFF065JSZ 280 bp overlap
ChIP breast epithelium ENCFF960NNA 280 bp overlap
ChIP endothelial cell of umbilical vein ENCFF091YHT 171 bp overlap
ChIP endothelial cell of umbilical vein ENCFF131DWO 199 bp overlap
ChIP endothelial cell of umbilical vein ENCFF467WJF 280 bp overlap
ChIP esophagus muscularis mucosa ENCFF432ZCY 280 bp overlap
ChIP esophagus muscularis mucosa ENCFF617PTB 247 bp overlap
ChIP esophagus muscularis mucosa ENCFF759BBR 280 bp overlap
ChIP esophagus muscularis mucosa ENCFF791ZXN 280 bp overlap
ChIP esophagus squamous epithelium ENCFF297FPP 280 bp overlap
ChIP esophagus squamous epithelium ENCFF708IOX 280 bp overlap
ChIP gastrocnemius medialis ENCFF081DTE 214 bp overlap
ChIP gastrocnemius medialis ENCFF145VIB 280 bp overlap
ChIP gastroesophageal sphincter ENCFF043KAM 274 bp overlap
ChIP gastroesophageal sphincter ENCFF070PCA 280 bp overlap
ChIP gastroesophageal sphincter ENCFF238INU 280 bp overlap
ChIP gastroesophageal sphincter ENCFF826EZZ 280 bp overlap
ChIP heart left ventricle ENCFF591JWH 192 bp overlap
ChIP lower leg skin ENCFF058ULB 268 bp overlap
ChIP lower leg skin ENCFF687RJC 268 bp overlap
ChIP prostate gland ENCFF881OMH 280 bp overlap
ChIP right lobe of liver ENCFF026NCK 280 bp overlap
ChIP sigmoid colon ENCFF101ILL 255 bp overlap
ChIP sigmoid colon ENCFF653CQA 280 bp overlap
ChIP sigmoid colon ENCFF725QFT 209 bp overlap
ChIP sigmoid colon ENCFF748YVT 196 bp overlap
ChIP sigmoid colon ENCFF754JQR 119 bp overlap
ChIP spleen ENCFF044PYR 280 bp overlap
ChIP spleen ENCFF446ZGT 280 bp overlap
ChIP spleen ENCFF706IUS 195 bp overlap
ChIP stomach ENCFF607ZPU 193 bp overlap
ChIP stomach ENCFF820WZN 171 bp overlap
ChIP suprapubic skin ENCFF748PRQ 233 bp overlap
ChIP thyroid gland ENCFF979LRR 229 bp overlap
ChIP tibial nerve ENCFF983HAU 280 bp overlap
ChIP transverse colon ENCFF098HBD 280 bp overlap
ChIP transverse colon ENCFF098HBD 202 bp overlap
ChIP transverse colon ENCFF193UMS 280 bp overlap
ChIP transverse colon ENCFF607LKE 278 bp overlap
ChIP transverse colon ENCFF840PXT 258 bp overlap
ChIP upper lobe of left lung ENCFF095BJW 148 bp overlap
ChIP upper lobe of left lung ENCFF199JUI 251 bp overlap
ChIP upper lobe of left lung ENCFF504HCM 280 bp overlap
ChIP upper lobe of left lung ENCFF640VPA 271 bp overlap
ChIP uterus ENCFF208ADI 280 bp overlap
ChIP uterus ENCFF566ZPY 280 bp overlap
ChIP vagina ENCFF305NWS 278 bp overlap
ChIP vagina ENCFF384GAB 192 bp overlap
POU5F1 2 datasets
ChIP BG03 GSE21614.POU5F1.BG03 192 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 180 bp overlap
RBBP5 1 dataset
ChIP WA01 ENCSR000AQC.RBBP5.WA01 68 bp overlap
RELA 22 datasets
ChIP HAEC_TNFa_4h GSE89970.RELA.HAEC_TNFa_4h 280 bp overlap
ChIP HUVEC-C_TNF GSE43070.RELA.HUVEC-C_TNF 222 bp overlap
ChIP HUVEC-C_TNF-30min GSE121890.RELA.HUVEC-C_TNF-30min 251 bp overlap
ChIP HUVEC-C_TNF-60min GSE121890.RELA.HUVEC-C_TNF-60min 261 bp overlap
ChIP HUVEC-C_TNF_30M GSE34500.RELA.HUVEC-C_TNF_30M 251 bp overlap
ChIP aortic-endothelial-cell_IL1B_D10 GSE139377.RELA.aortic-endothelial-cell_IL1B_D10 182 bp overlap
ChIP aortic-endothelial-cell_IL1B_D13 GSE139377.RELA.aortic-endothelial-cell_IL1B_D13 210 bp overlap
ChIP aortic-endothelial-cell_IL1B_D16 GSE139377.RELA.aortic-endothelial-cell_IL1B_D16 280 bp overlap
ChIP aortic-endothelial-cell_IL1B_D2 GSE139377.RELA.aortic-endothelial-cell_IL1B_D2 254 bp overlap
ChIP aortic-endothelial-cell_IL1B_D22 GSE139377.RELA.aortic-endothelial-cell_IL1B_D22 219 bp overlap
ChIP aortic-endothelial-cell_IL1B_D25 GSE139377.RELA.aortic-endothelial-cell_IL1B_D25 92 bp overlap
ChIP aortic-endothelial-cell_IL1B_D35 GSE139377.RELA.aortic-endothelial-cell_IL1B_D35 211 bp overlap
ChIP aortic-endothelial-cell_IL1B_D38 GSE139377.RELA.aortic-endothelial-cell_IL1B_D38 200 bp overlap
ChIP aortic-endothelial-cell_IL1B_D4 GSE139377.RELA.aortic-endothelial-cell_IL1B_D4 216 bp overlap
ChIP aortic-endothelial-cell_IL1B_D40 GSE139377.RELA.aortic-endothelial-cell_IL1B_D40 217 bp overlap
ChIP aortic-endothelial-cell_IL1B_D45 GSE139377.RELA.aortic-endothelial-cell_IL1B_D45 182 bp overlap
ChIP aortic-endothelial-cell_IL1B_D47 GSE139377.RELA.aortic-endothelial-cell_IL1B_D47 280 bp overlap
ChIP aortic-endothelial-cell_IL1B_D49 GSE139377.RELA.aortic-endothelial-cell_IL1B_D49 182 bp overlap
ChIP aortic-endothelial-cell_IL1B_D53 GSE139377.RELA.aortic-endothelial-cell_IL1B_D53 191 bp overlap
ChIP aortic-endothelial-cell_IL1B_D7 GSE139377.RELA.aortic-endothelial-cell_IL1B_D7 190 bp overlap
ChIP aortic-endothelial-cell_IL1B_D8 GSE139377.RELA.aortic-endothelial-cell_IL1B_D8 174 bp overlap
ChIP aortic-endothelial-cell_IL1B_D9 GSE139377.RELA.aortic-endothelial-cell_IL1B_D9 280 bp overlap
REST 2 datasets
ChIP WA01 ENCSR000BHM.REST.WA01 138 bp overlap
ChIP hiPSC_IA12 GSE106870.REST.hiPSC_IA12 190 bp overlap
SIN3A 1 dataset
ChIP HUVEC-C GSE103245.SIN3A.HUVEC-C 192 bp overlap
SMAD3 1 dataset
ChIP BG03 GSE21614.SMAD3.BG03 150 bp overlap
SMARCA4 2 datasets
ChIP hiPSC GSE124903.SMARCA4.hiPSC 276 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 198 bp overlap
SMARCB1 1 dataset
ChIP hiPSC GSE124903.SMARCB1.hiPSC 223 bp overlap
SMARCC1 1 dataset
ChIP SYO-1_shCt GSE139053.SMARCC1.SYO-1_shCt 170 bp overlap
SMC1 1 dataset
ChIP HCAEC GSE101921.SMC1.HCAEC 280 bp overlap
SOX2 1 dataset
ChIP RENVM GSE49404.SOX2.RENVM 153 bp overlap
SS18 1 dataset
ChIP SYO-1_shCt GSE139053.SS18.SYO-1_shCt 280 bp overlap
STAT3 1 dataset
ChIP T-47D_JC5056 GSE126004.STAT3.T-47D_JC5056 222 bp overlap
TAF1 3 datasets
ChIP WA01 ENCSR000BHO.TAF1.WA01 191 bp overlap
ChIP liver ENCFF610UQP 280 bp overlap
ChIP liver ENCSR016BMM.TAF1.liver 267 bp overlap
TBP 2 datasets
ChIP WA01 ENCSR000ECB.TBP.WA01 125 bp overlap
ChIP hESC_2h GSE122298.TBP.hESC_2h 120 bp overlap
YY1 1 dataset
ChIP WA01 ENCSR000BKD.YY1.WA01 147 bp overlap
ZBTB20 1 dataset
ChIP HEK293 ENCSR460MBI.ZBTB20.HEK293 130 bp overlap
ZNF143 2 datasets
ChIP FLP143HA_T0 GSE39263.ZNF143.FLP143HA_T0 172 bp overlap
ChIP FLP76_T4 GSE39263.ZNF143.FLP76_T4 119 bp overlap
ZNF534 1 dataset
ChIP HEK293T GSE78099.ZNF534.HEK293T 233 bp overlap
Huangfu Lab · Publications · Resources · Contact