chr10 : 120,644,648 120,645,329
681 bp 35 TFs 4 linked genes
This 681 bp open chromatin element is linked to 4 target genes and is bound by 35 transcription factors.
Linked Genes
4 genes
Gene Expression Dist. to TSS Distance Link type
LINC02930 172.9 kb Distal Multiome
PLPP4 187.8 kb Distal Multiome
WDR11-DT 206.2 kb Distal Multiome
WDR11 206.4 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr10:120,639,648 – 120,650,329
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
35 transcription factors
Source
Cell type
BCOR 1 dataset
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 171 bp overlap
BRD4 1 dataset
ChIP hESC GSE33281.BRD4.hESC 61 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 303 bp overlap
EZH2 1 dataset
ChIP HCT-116 ENCSR046HGP.EZH2.HCT-116 245 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 560 bp overlap
ChIP DE DE-FOXA2-2 404 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 615 bp overlap
ChIP DE DE-GATA4-2 665 bp overlap
GATA6 9 datasets
ChIP DE DE-GATA6-1 643 bp overlap
ChIP DE DE-GATA6-2 649 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 479 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 615 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 607 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 681 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 619 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 610 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 583 bp overlap
GTF2B 1 dataset
ChIP IMR-90_TERT GSE38303.GTF2B.IMR-90_TERT 153 bp overlap
HIF1A 1 dataset
ChIP LNCaP_androgen-N_hypoxia-Y GSE114732.HIF1A.LNCaP_androgen-N_hypoxia-Y 77 bp overlap
JARID2 1 dataset
ChIP MRC-5_IPS25_CTR GSE48515.JARID2.MRC-5_IPS25_CTR 221 bp overlap
JUN 8 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 388 bp overlap
ChIP DE_D1 S13-DE-d1-JUN-exp1 289 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 522 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 484 bp overlap
ChIP ESC S24-ESC-d0-JUN-exp1 481 bp overlap
ChIP ESC S34-ESC-d0-JUN-exp2 254 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 523 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 532 bp overlap
MED1 1 dataset
ChIP HUVEC-C_siCTL GSE124892.MED1.HUVEC-C_siCTL 245 bp overlap
NANOG 9 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 681 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 183 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 327 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 673 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 283 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 204 bp overlap
ChIP hESC GSE18292.NANOG.hESC 93 bp overlap
ChIP hESC GSE20650.NANOG.hESC 192 bp overlap
ChIP hESC GSE18292.NANOG.hESC 105 bp overlap
PAX5 1 dataset
ChIP GM12878 ENCSR000BHD.PAX5.GM12878 132 bp overlap
PDX1 1 dataset
ChIP hiPSC GSE125768.PDX1.hiPSC 250 bp overlap
POU5F1 4 datasets
ChIP DE_D1 DED1-OCT4_Batch_II 411 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 681 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 169 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 201 bp overlap
PRDM14 2 datasets
ChIP NCCIT GSE71675.PRDM14.NCCIT 314 bp overlap
ChIP hESC GSE22767.PRDM14.hESC 586 bp overlap
RXRA 1 dataset
ChIP WA01 ENCSR000BJW.RXRA.WA01 124 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 681 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 556 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 477 bp overlap
SMAD2_3 3 datasets
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 457 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 585 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 510 bp overlap
SMAD3 1 dataset
ChIP BG03_DIFF_2H GSE36578.SMAD3.BG03_DIFF_2H 270 bp overlap
SMARCA4 1 dataset
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 256 bp overlap
SMARCB1 1 dataset
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 477 bp overlap
SMARCC1 1 dataset
ChIP DE_D1 S15-DE-d1-BAF155-exp1 246 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 579 bp overlap
SOX2 2 datasets
ChIP hiPSC GSE56567.SOX2.hiPSC 217 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 214 bp overlap
SPI1 1 dataset
ChIP DC_LPS GSE123347.SPI1.DC_LPS 111 bp overlap
TP53 1 dataset
ChIP hESC_DAMAGED GSE39912.TP53.hESC_DAMAGED 316 bp overlap
TRIM28 1 dataset
ChIP WIBR3_NAIVE GSE84382.TRIM28.WIBR3_NAIVE 174 bp overlap
YY1 1 dataset
ChIP WA01 ENCSR000BKD.YY1.WA01 130 bp overlap
ZNF143 1 dataset
ChIP FLP143HA_T0 GSE39263.ZNF143.FLP143HA_T0 149 bp overlap
ZNF423 1 dataset
ChIP WTC11 ENCFF574PBR 317 bp overlap
ZNF462 2 datasets
ChIP GM23338 ENCFF896CCA 251 bp overlap
ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 681 bp overlap
ZNF479 1 dataset
ChIP HEK293T GSE78099.ZNF479.HEK293T 82 bp overlap