chr10 : 99,524,765 99,525,305
540 bp 50 TFs 2 linked genes
This 540 bp open chromatin element is linked to LINC01475 and NKX2-3 and is bound by 50 transcription factors.
Linked Genes
2 genes
Gene Expression Dist. to TSS Distance Link type
LINC01475 2.1 kb Proximal Proximity
NKX2-3 7.6 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr10:99,519,765 – 99,530,305
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
50 transcription factors
Source
Cell type
BCOR 2 datasets
ChIP WA01 GSE104690.BCOR.WA01 335 bp overlap
ChIP WA01_KDM2B_KO GSE104690.BCOR.WA01_KDM2B_KO 162 bp overlap
BRD4 1 dataset
ChIP HAP1 GSE108387.BRD4.HAP1 309 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF031ISE 128 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 299 bp overlap
ESR1 1 dataset
ChIP T-47D_DMSO GSE148277.ESR1.T-47D_DMSO 246 bp overlap
EZH2 16 datasets
ChIP A-1847 GSE95643.EZH2.A-1847 248 bp overlap
ChIP A-673 ENCSR179SAO.EZH2.A-673 287 bp overlap
ChIP GM23248 ENCFF404ZHM 170 bp overlap
ChIP GM23338 ENCFF613YON 234 bp overlap
ChIP GM23338 ENCFF613YON 107 bp overlap
ChIP H1 ENCFF232NZA 540 bp overlap
ChIP Hep-3B2-1-7 GSE128137.EZH2.Hep-3B2-1-7 93 bp overlap
ChIP SU-DHL-6 GSE134136.EZH2.SU-DHL-6 173 bp overlap
ChIP dermal-fibroblast_Preneoplastic GSE126396.EZH2.dermal-fibroblast_Preneoplastic 198 bp overlap
ChIP fibroblast_LUNG ENCSR000ARO.EZH2.fibroblast_LUNG 208 bp overlap
ChIP fibroblast_LUNG ENCSR000ARO.EZH2.fibroblast_LUNG 228 bp overlap
ChIP keratinocyte ENCSR000ARK.EZH2.keratinocyte 164 bp overlap
ChIP neural ENCSR511CUH.EZH2.neural 252 bp overlap
ChIP neural progenitor cell ENCFF018MKA 540 bp overlap
ChIP neural progenitor cell ENCFF018MKA 540 bp overlap
ChIP neural progenitor cell ENCFF472NFV 540 bp overlap
FEZF1 2 datasets
ChIP HEK293 ENCFF528YED 438 bp overlap
ChIP HEK293 ENCSR827NWO.FEZF1.HEK293 315 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 433 bp overlap
ChIP DE DE-FOXA2-2 379 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 382 bp overlap
ChIP DE DE-GATA4-2 419 bp overlap
GATA6 9 datasets
ChIP DE DE-GATA6-2 398 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 364 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 359 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 352 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 439 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 380 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 388 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 312 bp overlap
ChIP foregut GSE117136.GATA6.foregut 263 bp overlap
GLIS1 1 dataset
ChIP HEK293 ENCSR482BBZ.GLIS1.HEK293 529 bp overlap
JARID2 5 datasets
ChIP EDOMIPS2 GSE48516.JARID2.EDOMIPS2 350 bp overlap
ChIP MRC-5_IPS25_MEG3 GSE48515.JARID2.MRC-5_IPS25_MEG3 173 bp overlap
ChIP UTEIPS11 GSE48516.JARID2.UTEIPS11 382 bp overlap
ChIP UTEIPS6 GSE48516.JARID2.UTEIPS6 540 bp overlap
ChIP UTEIPS7 GSE48516.JARID2.UTEIPS7 540 bp overlap
KLF1 1 dataset
ChIP HEK293 ENCSR859BMR.KLF1.HEK293 291 bp overlap
KLF17 1 dataset
ChIP HEK293 ENCSR065WUF.KLF17.HEK293 317 bp overlap
KLF4 2 datasets
ChIP BJ_INDUCED GSE36570.KLF4.BJ_INDUCED 117 bp overlap
ChIP BJ_INDUCED GSE36570.KLF4.BJ_INDUCED 253 bp overlap
MYC 1 dataset
ChIP BJ_INDUCED GSE36570.MYC.BJ_INDUCED 161 bp overlap
NANOG 1 dataset
ChIP HUES-8 GSE109524.NANOG.HUES-8 281 bp overlap
OSR2 1 dataset
ChIP HEK293 ENCSR324LTM.OSR2.HEK293 207 bp overlap
PATZ1 1 dataset
ChIP HEK293 ENCSR966ULI.PATZ1.HEK293 219 bp overlap
PCGF2 1 dataset
ChIP fibroblast_MET GSE55605.PCGF2.fibroblast_MET 203 bp overlap
PHIP 1 dataset
ChIP HEK293_ab833 GSE101646.PHIP.HEK293_ab833 540 bp overlap
POLR2A 1 dataset
ChIP sigmoid colon ENCFF725QFT 327 bp overlap
POU5F1 3 datasets
ChIP BJ_INDUCED GSE36570.POU5F1.BJ_INDUCED 278 bp overlap
ChIP DE_D1 DED1-OCT4_Batch_II 304 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 540 bp overlap
PRDM4 2 datasets
ChIP HEK293 ENCFF069PHD 380 bp overlap
ChIP HEK293 ENCSR443MVV.PRDM4.HEK293 340 bp overlap
PRDM6 2 datasets
ChIP HEK293 ENCFF283AJL 130 bp overlap
ChIP HEK293 ENCSR892QHR.PRDM6.HEK293 263 bp overlap
RNF2 3 datasets
ChIP H1 ENCFF239FFS 156 bp overlap
ChIP HUES-64 GSE104059.RNF2.HUES-64 540 bp overlap
ChIP WA01 GSE104690.RNF2.WA01 529 bp overlap
RYBP 1 dataset
ChIP WA01 GSE104690.RYBP.WA01 393 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 328 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 383 bp overlap
SMARCC1 4 datasets
ChIP DE_D1 S15-DE-d1-BAF155-exp1 288 bp overlap
ChIP G-401_Dox GSE71504.SMARCC1.G-401_Dox 172 bp overlap
ChIP SYO-1_shRING1A-B GSE139053.SMARCC1.SYO-1_shRING1A-B 227 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 253 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 237 bp overlap
SOX2 1 dataset
ChIP hiPSC GSE56567.SOX2.hiPSC 227 bp overlap
SP7 2 datasets
ChIP HEK293 ENCFF733RBE 484 bp overlap
ChIP HEK293 ENCSR468IJT.SP7.HEK293 540 bp overlap
SS18 1 dataset
ChIP Aska-SS_BAF47KO1 GSE108025.SS18.Aska-SS_BAF47KO1 422 bp overlap
SUZ12 3 datasets
ChIP H1 ENCFF881NFR 540 bp overlap
ChIP NT2-D1 ENCSR000EXH.SUZ12.NT2-D1 436 bp overlap
ChIP WA01 ENCSR000ATS.SUZ12.WA01 173 bp overlap
T 1 dataset
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 328 bp overlap
TCF7L2 2 datasets
ChIP HEK293 ENCFF513JQN 481 bp overlap
ChIP HEK293 ENCSR000EUY.TCF7L2.HEK293 258 bp overlap
TFAP2C 1 dataset
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 56 bp overlap
TRIM28 1 dataset
ChIP HEK293 ENCFF582MWI 488 bp overlap
YY1 1 dataset
ChIP Hep-G2_RBM25-KD GSE120104.YY1.Hep-G2_RBM25-KD 421 bp overlap
ZBTB42 1 dataset
ChIP HEK293 GSE76494.ZBTB42.HEK293 343 bp overlap
ZNF143 1 dataset
ChIP FLP143HA_T4 GSE39263.ZNF143.FLP143HA_T4 156 bp overlap
ZNF263 1 dataset
ChIP HEK293 ENCFF336CWQ 494 bp overlap
ZNF561 2 datasets
ChIP HEK293 ENCFF399XKF 401 bp overlap
ChIP HEK293 ENCSR125ULS.ZNF561.HEK293 333 bp overlap
ZSCAN16 1 dataset
ChIP HEK293 GSE76494.ZSCAN16.HEK293 140 bp overlap