chr1 : 181,662,647 181,662,968
321 bp 67 TFs 0 linked genes
This 321 bp open chromatin element has no linked target genes and is bound by 67 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:181,657,647 – 181,667,968
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
67 transcription factors
Source
Cell type
AR 1 dataset
ChIP breast_tumor_Male_8 GSE104399.AR.breast_tumor_Male_8 168 bp overlap
ARGFX 1 dataset
Motif DE_60h DE_60h-ARGFX_MA1463.2 8 bp overlap
Alx4 1 dataset
Motif DE_60h DE_60h-Alx4_MA0853.2 12 bp overlap
Arx 1 dataset
Motif DE_60h DE_60h-Arx_MA0874.2 10 bp overlap
Atf3 1 dataset
Motif DE_60h DE_60h-Atf3_MA1988.2 7 bp overlap
BACH1 1 dataset
Motif DE_60h DE_60h-BACH1_MA1633.2 9 bp overlap
BARX1 1 dataset
Motif DE_60h DE_60h-BARX1_MA0875.2 6 bp overlap
BATF 1 dataset
Motif DE_60h DE_60h-BATF_MA1634.2 7 bp overlap
BATF3 1 dataset
Motif DE_60h DE_60h-BATF3_MA0835.3 7 bp overlap
BNC2 1 dataset
Motif DE_60h DE_60h-BNC2_MA1928.2 7 bp overlap
BSX 1 dataset
Motif DE_60h DE_60h-BSX_MA0876.2 6 bp overlap
DLX1 1 dataset
Motif DE_60h DE_60h-DLX1_MA0879.3 6 bp overlap
DLX6 1 dataset
Motif DE_60h DE_60h-DLX6_MA0882.2 6 bp overlap
DUXA 1 dataset
Motif DE_60h DE_60h-DUXA_MA0884.2 13 bp overlap
Dlx2 1 dataset
Motif DE_60h DE_60h-Dlx2_MA0885.3 8 bp overlap
Dlx3 1 dataset
Motif DE_60h DE_60h-Dlx3_MA0880.2 6 bp overlap
Dlx4 1 dataset
Motif DE_60h DE_60h-Dlx4_MA0881.2 6 bp overlap
Dlx5 1 dataset
Motif DE_60h DE_60h-Dlx5_MA1476.3 8 bp overlap
Dux 1 dataset
Motif DE_60h DE_60h-Dux_MA0611.3 11 bp overlap
E2F6 1 dataset
ChIP WA01 ENCSR000BSI.E2F6.WA01 115 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 204 bp overlap
EZH2 1 dataset
ChIP LNCaP GSE39459.EZH2.LNCaP 195 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 321 bp overlap
ChIP DE DE-FOXA2-2 321 bp overlap
Foxl2 1 dataset
Motif DE_60h DE_60h-Foxl2_MA1607.2 10 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 321 bp overlap
ChIP DE DE-GATA4-2 321 bp overlap
GATA6 7 datasets
ChIP DE DE-GATA6-1 321 bp overlap
ChIP DE DE-GATA6-2 321 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 225 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 307 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 274 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 321 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 268 bp overlap
GBX2 1 dataset
Motif DE_60h DE_60h-GBX2_MA0890.2 6 bp overlap
HAND2 1 dataset
Motif DE_60h DE_60h-HAND2_MA1638.2 6 bp overlap
HESX1 1 dataset
Motif DE_60h DE_60h-HESX1_MA0894.2 6 bp overlap
HOXA7 1 dataset
Motif DE_60h DE_60h-HOXA7_MA1498.3 6 bp overlap
JUN 1 dataset
ChIP DE_D2 S02-DE-d2-JUN-exp1 207 bp overlap
Jun 1 dataset
Motif DE_60h DE_60h-Jun_MA0489.3 8 bp overlap
LBX2 1 dataset
Motif DE_60h DE_60h-LBX2_MA0699.2 6 bp overlap
LHX2 1 dataset
Motif DE_60h DE_60h-LHX2_MA0700.3 6 bp overlap
Lhx1 1 dataset
Motif DE_60h DE_60h-Lhx1_MA1518.3 10 bp overlap
MAX 1 dataset
ChIP WA01 ENCSR000EUP.MAX.WA01 180 bp overlap
MSX1 1 dataset
Motif DE_60h DE_60h-MSX1_MA0666.3 6 bp overlap
MSX2 1 dataset
Motif DE_60h DE_60h-MSX2_MA0708.3 6 bp overlap
MYC 1 dataset
ChIP P493-6_scramble-shRNA GSE101853.MYC.P493-6_scramble-shRNA 174 bp overlap
Msx3 1 dataset
Motif DE_60h DE_60h-Msx3_MA0709.2 6 bp overlap
NANOG 4 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 242 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 148 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 321 bp overlap
ChIP hESC GSE18292.NANOG.hESC 93 bp overlap
Nobox 1 dataset
Motif DE_60h DE_60h-Nobox_MA0125.2 6 bp overlap
OTX2 1 dataset
ChIP WTC11 ENCFF634NAO 217 bp overlap
PHOX2A 1 dataset
Motif DE_60h DE_60h-PHOX2A_MA0713.1 11 bp overlap
POU2F1 1 dataset
Motif DE_60h DE_60h-POU2F1_MA0785.2 9 bp overlap
POU2F2 1 dataset
Motif DE_60h DE_60h-POU2F2_MA0507.3 13 bp overlap
POU3F1 1 dataset
Motif DE_60h DE_60h-POU3F1_MA0786.2 10 bp overlap
POU3F2 1 dataset
Motif DE_60h DE_60h-POU3F2_MA0787.1 12 bp overlap
POU3F3 1 dataset
Motif DE_60h DE_60h-POU3F3_MA0788.1 13 bp overlap
POU3F4 1 dataset
Motif DE_60h DE_60h-POU3F4_MA0789.1 9 bp overlap
POU5F1 1 dataset
ChIP HUES-8 GSE109524.POU5F1.HUES-8 236 bp overlap
Ptf1A 1 dataset
Motif DE_60h DE_60h-Ptf1A_MA1618.2 9 bp overlap
RAX 1 dataset
Motif DE_60h DE_60h-RAX_MA0718.2 6 bp overlap
SMAD2 1 dataset
ChIP endoderm GSE29422.SMAD2.endoderm 149 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 269 bp overlap
SMAD3 1 dataset
ChIP BG03_DIFF_48H GSE36578.SMAD3.BG03_DIFF_48H 179 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 284 bp overlap
USF1 1 dataset
ChIP WA01 ENCSR000BIU.USF1.WA01 162 bp overlap
YY1 1 dataset
ChIP NT2-D1 ENCSR000EXG.YY1.NT2-D1 113 bp overlap
ZNF19 1 dataset
ChIP HEK293T GSE78099.ZNF19.HEK293T 167 bp overlap
ZNF320 1 dataset
ChIP HEK293 GSE76494.ZNF320.HEK293 180 bp overlap
ZNF423 1 dataset
ChIP WTC11 ENCFF574PBR 297 bp overlap
ZNF496 1 dataset
ChIP HEK293T GSE78099.ZNF496.HEK293T 294 bp overlap
ZNF667 1 dataset
Motif DE_60h DE_60h-ZNF667_MA1984.2 11 bp overlap