chr9 : 19,457,109 19,457,325
216 bp 38 TFs 2 linked genes
This 216 bp open chromatin element is linked to ENSG00000260912 and ENSG00000293266 and is bound by 38 transcription factors.
Linked Genes
2 genes
Gene Expression Dist. to TSS Distance Link type
ENSG00000260912 3.9 kb Proximal Proximity
ENSG00000293266 7.2 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr9:19,452,109 – 19,462,325
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
38 transcription factors
Source
Cell type
AFF4 1 dataset
ChIP HeLa GSE40632.AFF4.HeLa 160 bp overlap
AR 1 dataset
ChIP prostate_1798_T GSE130408.AR.prostate_1798_T 139 bp overlap
ARID2 1 dataset
ChIP Aska-SS_shSSX GSE108025.ARID2.Aska-SS_shSSX 107 bp overlap
ASH2L 2 datasets
ChIP GM12878 ENCSR849WCQ.ASH2L.GM12878 169 bp overlap
ChIP Hep-G2 ENCSR508LMH.ASH2L.Hep-G2 119 bp overlap
ATF7 1 dataset
ChIP GM12878 ENCFF037PYH 102 bp overlap
BAP1 1 dataset
ChIP NCI-H1963_shNONT GSE145028.BAP1.NCI-H1963_shNONT 216 bp overlap
BRD3 2 datasets
ChIP HEK293T GSE39579.BRD3.HEK293T 159 bp overlap
ChIP HUVEC-C GSE60171.BRD3.HUVEC-C 181 bp overlap
BRD4 9 datasets
ChIP CLL_patient1 GSE109411.BRD4.CLL_patient1 54 bp overlap
ChIP Jurkat GSE83777.BRD4.Jurkat 175 bp overlap
ChIP LNCaP-C4-2_F133V GSE88871.BRD4.LNCaP-C4-2_F133V 162 bp overlap
ChIP LNCaP-C4-2_OE GSE88871.BRD4.LNCaP-C4-2_OE 60 bp overlap
ChIP MDA-MB-231_JQ1 GSE116879.BRD4.MDA-MB-231_JQ1 63 bp overlap
ChIP MDA-MB-231_JQ1_rDNA GSE116879.BRD4.MDA-MB-231_JQ1_rDNA 63 bp overlap
ChIP NCI-H1963 GSE145028.BRD4.NCI-H1963 79 bp overlap
ChIP NCI-H1963_shNONT GSE145028.BRD4.NCI-H1963_shNONT 98 bp overlap
ChIP cortical-interneuron_R133C_KCl-pos_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-pos_JQ1-neg 130 bp overlap
CTCF 46 datasets
ChIP 22Rv1 ENCFF466OXN 75 bp overlap
ChIP 22Rv1 ENCSR857PBV.CTCF.22Rv1 106 bp overlap
ChIP 22Rv1_hydroxy_10nM_4h ENCSR847XGE.CTCF.22Rv1_hydroxy_10nM_4h 151 bp overlap
ChIP A-549 ENCSR000AUF.CTCF.A-549 106 bp overlap
ChIP B-cell ENCSR000AUV.CTCF.B-cell 121 bp overlap
ChIP C4-2B ENCFF821XVN 216 bp overlap
ChIP CD14 ENCSR000ATN.CTCF.CD14 128 bp overlap
ChIP DOHH2 ENCSR084RDK.CTCF.DOHH2 65 bp overlap
ChIP FT282_EV GSE131931.CTCF.FT282_EV 101 bp overlap
ChIP GP5D_SIRAD21 GSE51234.CTCF.GP5D_SIRAD21 102 bp overlap
ChIP HCT-116 GSE131606.CTCF.HCT-116 216 bp overlap
ChIP HFFc6 ENCFF005CJI 54 bp overlap
ChIP ID00015 GSE76922.CTCF.ID00015 61 bp overlap
ChIP LNCaP-C4-2B ENCSR460LGH.CTCF.LNCaP-C4-2B 89 bp overlap
ChIP Loucy ENCSR464DKE.CTCF.Loucy 74 bp overlap
ChIP NPC GSE115407.CTCF.NPC 216 bp overlap
ChIP OCI-Ly7 ENCSR027HML.CTCF.OCI-Ly7 79 bp overlap
ChIP Panc1 ENCFF056JQX 101 bp overlap
ChIP RWPE-2 ENCSR856JJB.CTCF.RWPE-2 126 bp overlap
ChIP RWPE1 ENCFF200GQF 71 bp overlap
ChIP RWPE2 ENCFF911IEE 211 bp overlap
ChIP SK-N-SH ENCSR541AMF.CTCF.SK-N-SH 98 bp overlap
ChIP SLK_CTCF-KD GSE138105.CTCF.SLK_CTCF-KD 176 bp overlap
ChIP THP-1_Pam3csk-020m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-020m-Flavo-000m 54 bp overlap
ChIP VCaP ENCFF858YQT 99 bp overlap
ChIP VCaP ENCSR265ARE.CTCF.VCaP 86 bp overlap
ChIP astrocyte ENCFF558APA 85 bp overlap
ChIP breast_epithelium ENCSR697YIN.CTCF.breast_epithelium 112 bp overlap
ChIP chondrocyte ENCFF134ORZ 152 bp overlap
ChIP cortical-interneuron_KCl-pos_JQ1-neg GSE117508.CTCF.cortical-interneuron_KCl-pos_JQ1-neg 73 bp overlap
ChIP cortical-interneuron_KCl-pos_JQ1-pos GSE117508.CTCF.cortical-interneuron_KCl-pos_JQ1-pos 86 bp overlap
ChIP epithelial cell of prostate ENCFF086GTI 136 bp overlap
ChIP gastrocnemius-medialis ENCSR428BKN.CTCF.gastrocnemius-medialis 192 bp overlap
ChIP hESC_D15 GSE116862.CTCF.hESC_D15 207 bp overlap
ChIP hESC_D5 GSE116862.CTCF.hESC_D5 216 bp overlap
ChIP hESC_D80 GSE116862.CTCF.hESC_D80 57 bp overlap
ChIP lymphoblast GSE155324.CTCF.lymphoblast 216 bp overlap
ChIP lymphoblast_mut GSE155324.CTCF.lymphoblast_mut 163 bp overlap
ChIP neural ENCSR822CEA.CTCF.neural 73 bp overlap
ChIP neuron GSE115407.CTCF.neuron 216 bp overlap
ChIP peripheral-blood-neutrophil_PMA-1 GSE126755.CTCF.peripheral-blood-neutrophil_PMA-1 130 bp overlap
ChIP peripheral-blood-neutrophil_US-1 GSE126755.CTCF.peripheral-blood-neutrophil_US-1 99 bp overlap
ChIP plasmablast GSE142493.CTCF.plasmablast 54 bp overlap
ChIP primary-glioblastoma_G523 GSE121601.CTCF.primary-glioblastoma_G523 132 bp overlap
ChIP prostate_epithelial ENCSR196HOM.CTCF.prostate_epithelial 131 bp overlap
ChIP retina_AB1-FW16 GSE86981.CTCF.retina_AB1-FW16 92 bp overlap
ERG 1 dataset
ChIP RWPE-1 GSE114241.ERG.RWPE-1 202 bp overlap
FOXA1 1 dataset
ChIP breast-cancer_ENOB-2849 GSE128018.FOXA1.breast-cancer_ENOB-2849 123 bp overlap
FOXL2 1 dataset
ChIP HGrC1_C134W-TGF GSE138496.FOXL2.HGrC1_C134W-TGF 132 bp overlap
GABPA 1 dataset
ChIP liver ENCFF500III 65 bp overlap
GATA3 1 dataset
ChIP Jurkat GSE76181.GATA3.Jurkat 99 bp overlap
HMGXB4 2 datasets
ChIP HepG2 ENCFF032DND 90 bp overlap
ChIP HepG2 ENCFF179TAD 61 bp overlap
HOXB13 4 datasets
ChIP LNCaP GSE96652.HOXB13.LNCaP 117 bp overlap
ChIP prostate-cancer_PDX_70 GSE130408.HOXB13.prostate-cancer_PDX_70 59 bp overlap
ChIP prostate_P29_T GSE130408.HOXB13.prostate_P29_T 184 bp overlap
ChIP prostate_P5_T GSE130408.HOXB13.prostate_P5_T 92 bp overlap
ILF3 1 dataset
ChIP K-562 GSE103215.ILF3.K-562 139 bp overlap
JUN 2 datasets
ChIP MCF-7_DMSO GSE157385.JUN.MCF-7_DMSO 216 bp overlap
ChIP MCF-7_abemaciclib GSE157385.JUN.MCF-7_abemaciclib 216 bp overlap
KDM1A 1 dataset
ChIP HepG2 ENCFF240UWG 161 bp overlap
MAX 1 dataset
ChIP HepG2 ENCFF507HCX 178 bp overlap
MLLT1 1 dataset
ChIP GM12878 ENCFF995GXC 80 bp overlap
NKX2-5 1 dataset
ChIP hESC_ab3584 GSE89457.NKX2-5.hESC_ab3584 187 bp overlap
PGR 1 dataset
ChIP myometrium_NP2 GSE137550.PGR.myometrium_NP2 216 bp overlap
POLR2A 2 datasets
ChIP prostate gland ENCFF545MVF 71 bp overlap
ChIP thyroid gland ENCFF979LRR 82 bp overlap
RAD21 14 datasets
ChIP GP5D GSE51234.RAD21.GP5D 216 bp overlap
ChIP HAP1 GSE126634.RAD21.HAP1 216 bp overlap
ChIP HCT-116 GSE131606.RAD21.HCT-116 216 bp overlap
ChIP HEK293_siCtrl GSE130135.RAD21.HEK293_siCtrl 198 bp overlap
ChIP HEK293_siE1A GSE130135.RAD21.HEK293_siE1A 216 bp overlap
ChIP HEK293_siE1A-TAZ GSE130135.RAD21.HEK293_siE1A-TAZ 216 bp overlap
ChIP HEK293_siYAP GSE130135.RAD21.HEK293_siYAP 216 bp overlap
ChIP HUVEC-C_hypoxia GSE94872.RAD21.HUVEC-C_hypoxia 171 bp overlap
ChIP SLK_CTCF-KD GSE138105.RAD21.SLK_CTCF-KD 216 bp overlap
ChIP SLK_Ctrl GSE138105.RAD21.SLK_Ctrl 135 bp overlap
ChIP THP-1_Pam3csk-120m-Flavo-000m GSE103477.RAD21.THP-1_Pam3csk-120m-Flavo-000m 166 bp overlap
ChIP lymphoblast GSE155324.RAD21.lymphoblast 133 bp overlap
ChIP lymphoblast_mut GSE155324.RAD21.lymphoblast_mut 216 bp overlap
ChIP peripheral-blood-neutrophil_PMA-1 GSE126755.RAD21.peripheral-blood-neutrophil_PMA-1 200 bp overlap
SMARCA4 3 datasets
ChIP 501-mel_SHSOX10 GSE61965.SMARCA4.501-mel_SHSOX10 206 bp overlap
ChIP A-549_AG15686 GSE132290.SMARCA4.A-549_AG15686 99 bp overlap
ChIP Aska-SS_shSSX GSE108025.SMARCA4.Aska-SS_shSSX 137 bp overlap
SMC1 4 datasets
ChIP DKO GSE131606.SMC1.DKO 76 bp overlap
ChIP HAP1_WaplKO-33 GSE94992.SMC1.HAP1_WaplKO-33 211 bp overlap
ChIP HAP1_WaplKO-33_SCC4KO GSE94992.SMC1.HAP1_WaplKO-33_SCC4KO 111 bp overlap
ChIP HCAEC GSE101921.SMC1.HCAEC 152 bp overlap
SMC1A 1 dataset
ChIP primary-epidermal-keratinocyte_diff_d6 GSE84657.SMC1A.primary-epidermal-keratinocyte_diff_d6 153 bp overlap
SMC3 4 datasets
ChIP GP5D GSE51234.SMC3.GP5D 216 bp overlap
ChIP HeLa GSE126990.SMC3.HeLa 146 bp overlap
ChIP HeLa-Kyoto GSE102884.SMC3.HeLa-Kyoto 146 bp overlap
ChIP HeLa-Kyoto GSE138405.SMC3.HeLa-Kyoto 146 bp overlap
STAG1 2 datasets
ChIP HeLa GSE126990.STAG1.HeLa 104 bp overlap
ChIP HeLa-Kyoto GSE138405.STAG1.HeLa-Kyoto 104 bp overlap
STAG2 1 dataset
ChIP OCI-AML-3 GSE111537.STAG2.OCI-AML-3 216 bp overlap
T 1 dataset
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 139 bp overlap
TRIM28 1 dataset
ChIP HEK293 ENCFF582MWI 188 bp overlap
YY1 1 dataset
ChIP liver ENCFF515BWJ 63 bp overlap
ZBTB7A 2 datasets
ChIP HUDEP-2 GSE103445.ZBTB7A.HUDEP-2 202 bp overlap
ChIP VCaP_FBS GSE123089.ZBTB7A.VCaP_FBS 206 bp overlap
ZNF766 1 dataset
ChIP K562 ENCFF348LDO 71 bp overlap