chr9 : 8,750,621 – 8,751,402

781 bp 49 TFs 0 linked genes

This 781 bp open chromatin element has no linked target genes and is bound by 49 transcription factors.

Linked Genes

No linked genes

Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

49 transcription factors

AR 1 dataset

ChIP LNCaP GSE80256.AR.LNCaP 224 bp overlap

ARID1A 1 dataset

ChIP HAP1 GSE108387.ARID1A.HAP1 406 bp overlap

BRD3 1 dataset

ChIP H-1_DE GSE126661.BRD3.H-1_DE 495 bp overlap

BRD4 4 datasets

ChIP HAP1 GSE108387.BRD4.HAP1 272 bp overlap

ChIP HAP1 GSE108387.BRD4.HAP1 420 bp overlap

ChIP RH4_shCHD4 GSE140115.BRD4.RH4_shCHD4 367 bp overlap

ChIP RH4_shscr GSE140115.BRD4.RH4_shscr 187 bp overlap

CASZ1 1 dataset

ChIP rhabdomyosarcoma_DOX GSE126142.CASZ1.rhabdomyosarcoma_DOX 241 bp overlap

CHD1 1 dataset

ChIP WA01 ENCSR000AQK.CHD1.WA01 193 bp overlap

CHD4 1 dataset

ChIP SCMC GSE155861.CHD4.SCMC 405 bp overlap

CHD7 1 dataset

ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 508 bp overlap

CTCF 2 datasets

ChIP HAP1_clone21_CTCF-CRISPR GSE152721.CTCF.HAP1_clone21_CTCF-CRISPR 388 bp overlap

ChIP anterior-temporal-cortex_fetal GSE116825.CTCF.anterior-temporal-cortex_fetal 229 bp overlap

ESRRB 1 dataset

Motif ES_0h ES_0h-ESRRB_MA0141.4 10 bp overlap

ESRRG 1 dataset

ChIP cardiomyocyte GSE113760.ESRRG.cardiomyocyte 310 bp overlap

EWSR1-FLI1 1 dataset

Motif ES_0h ES_0h-EWSR1-FLI1_MA0149.1 18 bp overlap

EZH2 1 dataset

ChIP RH30_DMSO GSE85169.EZH2.RH30_DMSO 248 bp overlap

FEZF2 1 dataset

Motif ES_0h ES_0h-FEZF2_MA2341.1 8 bp overlap

FOXO1-PAX3 1 dataset

ChIP RH4_DMSO-6H GSE116344.FOXO1-PAX3.RH4_DMSO-6H 242 bp overlap

GATA4 1 dataset

ChIP DE DE-GATA4-2 84 bp overlap

GATA6 5 datasets

ChIP DE_D1 S14-DE-d1-GATA6-exp1 104 bp overlap

ChIP DE_D1 S41-DE-d1-GATA6-exp2 60 bp overlap

ChIP DE_D2 S55-DE-d2-GATA6-exp2 171 bp overlap

ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 121 bp overlap

ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 70 bp overlap

HDAC2 1 dataset

ChIP RH4_Entinostat-6H GSE116344.HDAC2.RH4_Entinostat-6H 322 bp overlap

HDAC3 1 dataset

ChIP RH4_DMSO-6H GSE116344.HDAC3.RH4_DMSO-6H 240 bp overlap

KLF9 1 dataset

ChIP GBM1A GSE62211.KLF9.GBM1A 183 bp overlap

MITF 1 dataset

ChIP melanocyte_CTR GSE50681.MITF.melanocyte_CTR 205 bp overlap

MTA2 1 dataset

ChIP RH4 GSE155861.MTA2.RH4 312 bp overlap

NANOG 5 datasets

ChIP HUES-8 GSE109524.NANOG.HUES-8 452 bp overlap

ChIP HUES-8 GSE109524.NANOG.HUES-8 177 bp overlap

ChIP WA01 ENCSR000BMT.NANOG.WA01 121 bp overlap

ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 246 bp overlap

ChIP WA09 GSE105028.NANOG.WA09 272 bp overlap

POU4F2 1 dataset

ChIP HNPC_DIF GSE74814.POU4F2.HNPC_DIF 278 bp overlap

RAD21 5 datasets

ChIP HAP1 GSE126634.RAD21.HAP1 583 bp overlap

ChIP HAP1 GSE152721.RAD21.HAP1 426 bp overlap

ChIP HAP1_CTCF GSE126634.RAD21.HAP1_CTCF 636 bp overlap

ChIP HAP1_clone25 GSE152721.RAD21.HAP1_clone25 372 bp overlap

ChIP RH4 GSE83726.RAD21.RH4 214 bp overlap

RBPJ 4 datasets

Motif ES_0h ES_0h-RBPJ_MA1116.2 6 bp overlap

ChIP GIC GSE79734.RBPJ.GIC 329 bp overlap

ChIP GSC8-11_12d-das GSE74557.RBPJ.GSC8-11_12d-das 243 bp overlap

ChIP GSC8-11_dasatinib GSE74557.RBPJ.GSC8-11_dasatinib 427 bp overlap

SIX2 2 datasets

ChIP HEK GSE73865.SIX2.HEK 229 bp overlap

ChIP kidney_fetal_17w GSE75948.SIX2.kidney_fetal_17w 205 bp overlap

SMAD2-3 2 datasets

ChIP HGrC1_EV-TGF GSE138496.SMAD2-3.HGrC1_EV-TGF 234 bp overlap

ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 373 bp overlap

SMAD2_3 1 dataset

ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 125 bp overlap

SMARCA2 3 datasets

ChIP NPC_K755R-pos GSE122631.SMARCA2.NPC_K755R-pos 244 bp overlap

ChIP NPC_K755R-siCT GSE122631.SMARCA2.NPC_K755R-siCT 219 bp overlap

ChIP NPC_R1159Q_AM GSE122631.SMARCA2.NPC_R1159Q_AM 315 bp overlap

SMARCA4 10 datasets

ChIP Aska-SS_shSSX GSE108025.SMARCA4.Aska-SS_shSSX 292 bp overlap

ChIP NPC_K755R-pos GSE122631.SMARCA4.NPC_K755R-pos 200 bp overlap

ChIP NPC_K755R-siAP GSE122631.SMARCA4.NPC_K755R-siAP 680 bp overlap

ChIP NPC_siCT GSE122631.SMARCA4.NPC_siCT 277 bp overlap

ChIP NSC GSE125033.SMARCA4.NSC 749 bp overlap

ChIP TTC-1240 GSE124903.SMARCA4.TTC-1240 269 bp overlap

ChIP TTC-1240_R377H GSE124903.SMARCA4.TTC-1240_R377H 253 bp overlap

ChIP hiPSC GSE124903.SMARCA4.hiPSC 443 bp overlap

ChIP hiPSC GSE124903.SMARCA4.hiPSC 159 bp overlap

ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 169 bp overlap

SMARCB1 1 dataset

ChIP hiPSC GSE124903.SMARCB1.hiPSC 469 bp overlap

SMARCC1 2 datasets

ChIP hiPSC GSE124903.SMARCC1.hiPSC 434 bp overlap

ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 297 bp overlap

SOX17_M 1 dataset

ChIP DE_D2 DED2-SOX17-M_Batch_II 316 bp overlap

SOX2 3 datasets

ChIP HNSC GSE69479.SOX2.HNSC 781 bp overlap

ChIP RENVM GSE49404.SOX2.RENVM 254 bp overlap

ChIP hiPSC GSE56567.SOX2.hiPSC 228 bp overlap

SOX8 2 datasets

ChIP RH4_DMSO-6H GSE116344.SOX8.RH4_DMSO-6H 201 bp overlap

ChIP RH4_Entinostat-6H GSE116344.SOX8.RH4_Entinostat-6H 261 bp overlap

STAT1 2 datasets

ChIP CD14_LPS GSE43036.STAT1.CD14_LPS 146 bp overlap

Motif ES_0h ES_0h-STAT1_MA0137.4 9 bp overlap

STAT3 1 dataset

Motif ES_0h ES_0h-STAT3_MA0144.3 9 bp overlap

Stat5b 1 dataset

Motif ES_0h ES_0h-Stat5b_MA1625.2 9 bp overlap

YY1 1 dataset

ChIP RH4_DMSO-6H GSE116344.YY1.RH4_DMSO-6H 371 bp overlap

ZBTB44 2 datasets

ChIP HEK293 ENCFF560VPN 311 bp overlap

ChIP HEK293 ENCSR076STQ.ZBTB44.HEK293 254 bp overlap

ZBTB6 1 dataset

Motif ES_0h ES_0h-ZBTB6_MA1581.2 9 bp overlap

ZFP69B 1 dataset

ChIP HEK293 ENCSR381VYR.ZFP69B.HEK293 236 bp overlap

ZNF143 1 dataset

ChIP HeLa GSE39263.ZNF143.HeLa 209 bp overlap

ZNF416 1 dataset

Motif ES_0h ES_0h-ZNF416_MA1979.2 10 bp overlap

ZNF675 1 dataset

Motif ES_0h ES_0h-ZNF675_MA1714.2 19 bp overlap

ZNF692 1 dataset

ChIP HEK293 ENCSR418MKG.ZNF692.HEK293 289 bp overlap

ZSCAN16 1 dataset

ChIP HEK293 GSE76494.ZSCAN16.HEK293 154 bp overlap

Zfp809 2 datasets

Motif ES_0h ES_0h-Zfp809_MA2125.1 9 bp overlap