chr9 : 1,129,234 – 1,129,909

675 bp 74 TFs 0 linked genes

This 675 bp open chromatin element has no linked target genes and is bound by 74 transcription factors.

Linked Genes

No linked genes

Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

74 transcription factors

ARNT::HIF1A 1 dataset

Motif DE_12h DE_12h-ARNTHIF1A_MA0259.2 5 bp overlap

BCL6B 2 datasets

Motif DE_12h DE_12h-BCL6B_MA0731.1 17 bp overlap

Motif ES_0h ES_0h-BCL6B_MA0731.1 17 bp overlap

BRD4 1 dataset

ChIP CD4_JG1 GSE33281.BRD4.CD4_JG1 180 bp overlap

Bcl11B 1 dataset

Motif DE_12h DE_12h-Bcl11B_MA1989.2 9 bp overlap

CUX1 1 dataset

Motif DE_12h DE_12h-CUX1_MA0754.3 9 bp overlap

CUX2 1 dataset

Motif DE_12h DE_12h-CUX2_MA0755.2 9 bp overlap

Cebpa 1 dataset

ChIP BLaER1 ENCFF346MCV 108 bp overlap

EZH2 1 dataset

ChIP A-1847_CARM1-KO GSE95643.EZH2.A-1847_CARM1-KO 500 bp overlap

Foxq1 1 dataset

Motif DE_12h DE_12h-Foxq1_MA0040.2 10 bp overlap

GATA2 1 dataset

ChIP primary-endometrial-stromal-cell_IVD_P2 GSE145673.GATA2.primary-endometrial-stromal-cell_IVD_P2 182 bp overlap

GATA4 1 dataset

ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 603 bp overlap

GATA6 3 datasets

ChIP DE_D1 S14-DE-d1-GATA6-exp1 349 bp overlap

ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 388 bp overlap

ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 436 bp overlap

GRHL2 2 datasets

Motif DE_12h DE_12h-GRHL2_MA1105.3 8 bp overlap

Gfi1B 1 dataset

Motif DE_12h DE_12h-Gfi1B_MA0483.2 10 bp overlap

HIF1A 1 dataset

Motif DE_12h DE_12h-HIF1A_MA1106.2 6 bp overlap

Hand1 1 dataset

Motif DE_12h DE_12h-Hand1_MA2123.1 9 bp overlap

Hnf1A 1 dataset

Motif DE_12h DE_12h-Hnf1A_MA1991.2 10 bp overlap

IRF2 1 dataset

Motif DE_12h DE_12h-IRF2_MA0051.2 16 bp overlap

Irf1 1 dataset

Motif DE_12h DE_12h-Irf1_MA0050.4 11 bp overlap

KLF1 1 dataset

Motif DE_12h DE_12h-KLF1_MA0493.3 8 bp overlap

KLF2 1 dataset

Motif DE_12h DE_12h-KLF2_MA1515.2 8 bp overlap

KLF4 1 dataset

Motif DE_12h DE_12h-KLF4_MA0039.5 8 bp overlap

KLF5 1 dataset

Motif DE_12h DE_12h-KLF5_MA0599.1 10 bp overlap

LIN54 1 dataset

Motif DE_12h DE_12h-LIN54_MA0619.2 7 bp overlap

Lef1 1 dataset

Motif DE_12h DE_12h-Lef1_MA0768.3 8 bp overlap

MEIS1 1 dataset

Motif DE_12h DE_12h-MEIS1_MA1639.2 9 bp overlap

MEIS2 1 dataset

Motif DE_12h DE_12h-MEIS2_MA1640.2 9 bp overlap

MSC 1 dataset

Motif DE_12h DE_12h-MSC_MA0665.1 10 bp overlap

MYOG 1 dataset

ChIP RH4_Entinostat-6H GSE116344.MYOG.RH4_Entinostat-6H 181 bp overlap

MZF1 1 dataset

Motif DE_12h DE_12h-MZF1_MA0056.3 8 bp overlap

Msgn1 1 dataset

Motif DE_12h DE_12h-Msgn1_MA1524.3 10 bp overlap

NANOG 2 datasets

ChIP HUES-8 GSE109524.NANOG.HUES-8 600 bp overlap

ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 520 bp overlap

ONECUT1 2 datasets

Motif DE_12h DE_12h-ONECUT1_MA0679.3 9 bp overlap

ChIP pancreatic-progenitor_PP1 GSE104840.ONECUT1.pancreatic-progenitor_PP1 271 bp overlap

PAX3 1 dataset

Motif DE_12h DE_12h-PAX3_MA0780.1 10 bp overlap

PAX3-FOXO1 2 datasets

ChIP RH3 GSE83726.PAX3-FOXO1.RH3 232 bp overlap

ChIP RH4 GSE140115.PAX3-FOXO1.RH4 311 bp overlap

PBX1 1 dataset

Motif DE_12h DE_12h-PBX1_MA0070.2 9 bp overlap

PBX2 1 dataset

Motif DE_12h DE_12h-PBX2_MA1113.3 9 bp overlap

PDX1 2 datasets

ChIP hiPSC GSE125768.PDX1.hiPSC 346 bp overlap

ChIP hiPSC_derived_PPs GSE106949.PDX1.hiPSC_derived_PPs 342 bp overlap

POU1F1 1 dataset

Motif DE_12h DE_12h-POU1F1_MA0784.3 14 bp overlap

POU2F1::SOX2 1 dataset

Motif DE_12h DE_12h-POU2F1SOX2_MA1962.1 17 bp overlap

POU2F2 1 dataset

Motif DE_12h DE_12h-POU2F2_MA0507.3 13 bp overlap

POU2F3 1 dataset

Motif DE_12h DE_12h-POU2F3_MA0627.3 9 bp overlap

POU3F3 1 dataset

Motif DE_12h DE_12h-POU3F3_MA0788.1 13 bp overlap

POU4F2 1 dataset

Motif DE_12h DE_12h-POU4F2_MA0683.2 15 bp overlap

POU5F1 2 datasets

ChIP HUES-8 GSE109524.POU5F1.HUES-8 546 bp overlap

ChIP hiPSC_3s2 GSE81899.POU5F1.hiPSC_3s2 150 bp overlap

PRDM1 1 dataset

Motif DE_12h DE_12h-PRDM1_MA0508.4 7 bp overlap

Pax7 1 dataset

Motif DE_12h DE_12h-Pax7_MA0680.3 10 bp overlap

Pou5f1::Sox2 1 dataset

Motif DE_12h DE_12h-Pou5f1Sox2_MA0142.1 15 bp overlap

RREB1 1 dataset

Motif DE_12h DE_12h-RREB1_MA0073.2 19 bp overlap

Runx1 1 dataset

Motif DE_12h DE_12h-Runx1_MA0002.3 9 bp overlap

SCRT2 1 dataset

Motif DE_12h DE_12h-SCRT2_MA0744.3 10 bp overlap

SETDB1 2 datasets

ChIP HEK293 ENCSR348AGV.SETDB1.HEK293 71 bp overlap

ChIP U2OS ENCSR000EYD.SETDB1.U2OS 71 bp overlap

SMAD2 1 dataset

Motif DE_12h DE_12h-SMAD2_MA1964.2 6 bp overlap

SMARCA4 2 datasets

ChIP hiPSC GSE124903.SMARCA4.hiPSC 410 bp overlap

ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 672 bp overlap

SMARCB1 2 datasets

ChIP hiPSC GSE124903.SMARCB1.hiPSC 476 bp overlap

ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 578 bp overlap

SMARCC1 2 datasets

ChIP hiPSC GSE124903.SMARCC1.hiPSC 211 bp overlap

ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 450 bp overlap

SOX8 1 dataset

ChIP RH4_Entinostat-6H GSE116344.SOX8.RH4_Entinostat-6H 265 bp overlap

SREBF2 1 dataset

Motif DE_12h DE_12h-SREBF2_MA0596.1 10 bp overlap

STAT1 2 datasets

Motif DE_12h DE_12h-STAT1_MA0137.4 9 bp overlap

Motif ES_0h ES_0h-STAT1_MA0137.4 9 bp overlap

Spz1 1 dataset

Motif DE_12h DE_12h-Spz1_MA0111.1 11 bp overlap

Stat5a 2 datasets

Motif DE_12h DE_12h-Stat5a_MA1624.2 9 bp overlap

Motif ES_0h ES_0h-Stat5a_MA1624.2 9 bp overlap

Tcf21 1 dataset

Motif DE_12h DE_12h-Tcf21_MA0832.2 10 bp overlap

VEZF1 1 dataset

Motif DE_12h DE_12h-VEZF1_MA1578.2 6 bp overlap

ZNF300 1 dataset

ChIP HEK293T GSE78099.ZNF300.HEK293T 296 bp overlap

ZNF354A 1 dataset

Motif DE_12h DE_12h-ZNF354A_MA1978.2 20 bp overlap

ZNF410 1 dataset

Motif DE_12h DE_12h-ZNF410_MA0752.2 16 bp overlap

ZNF418 2 datasets

Motif DE_12h DE_12h-ZNF418_MA1980.1 15 bp overlap

Motif ES_0h ES_0h-ZNF418_MA1980.1 15 bp overlap

ZNF462 1 dataset

ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 149 bp overlap

ZNF547 1 dataset

Motif DE_12h DE_12h-ZNF547_MA2334.1 13 bp overlap

ZNF768 1 dataset

Motif DE_12h DE_12h-ZNF768_MA1731.2 9 bp overlap

ZSCAN4 1 dataset

Motif DE_12h DE_12h-ZSCAN4_MA1155.1 15 bp overlap

Zfp335 2 datasets

Motif DE_12h DE_12h-Zfp335_MA2002.2 7 bp overlap

Motif ES_0h ES_0h-Zfp335_MA2002.2 7 bp overlap

Zic1::Zic2 1 dataset

Motif DE_12h DE_12h-Zic1Zic2_MA1628.2 7 bp overlap

Zic3 1 dataset

Motif DE_12h DE_12h-Zic3_MA0697.3 7 bp overlap