chr8 : 136,530,386 – 136,530,964

578 bp 50 TFs 1 linked gene

This 578 bp open chromatin element is linked to LINC02055 and is bound by 50 transcription factors.

Linked Genes

1 gene

Gene	Expression	Dist. to TSS	Distance	Link type
LINC02055		at TSS	At TSS	Proximity

Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

50 transcription factors

BRD2 2 datasets

ChIP HCC1806_BAZ2BsiRNA GSE116879.BRD2.HCC1806_BAZ2BsiRNA 136 bp overlap

ChIP HCC1806_NTsiRNA GSE116879.BRD2.HCC1806_NTsiRNA 123 bp overlap

BRD4 4 datasets

ChIP CLL_patient3 GSE109411.BRD4.CLL_patient3 122 bp overlap

ChIP LNCaP-C4-2_F133V GSE88871.BRD4.LNCaP-C4-2_F133V 100 bp overlap

ChIP LNCaP-C4-2_OE GSE88871.BRD4.LNCaP-C4-2_OE 84 bp overlap

ChIP SUM159PT_scramble GSE131097.BRD4.SUM159PT_scramble 124 bp overlap

CTCF 1 dataset

Motif DE_12h DE_12h-CTCF_MA1929.2 31 bp overlap

Cebpa 1 dataset

ChIP BLaER1 ENCFF460KDD 207 bp overlap

EGR1 1 dataset

Motif DE_12h DE_12h-EGR1_MA0162.5 10 bp overlap

EGR3 1 dataset

Motif DE_12h DE_12h-EGR3_MA0732.2 11 bp overlap

EGR4 1 dataset

Motif DE_12h DE_12h-EGR4_MA0733.2 11 bp overlap

ELF1 2 datasets

Motif DE_12h DE_12h-ELF1_MA0473.4 9 bp overlap

ChIP MCF-7 ENCFF305BNP 391 bp overlap

ELF2 1 dataset

Motif DE_12h DE_12h-ELF2_MA1483.3 10 bp overlap

ELF4 1 dataset

Motif DE_12h DE_12h-ELF4_MA0641.1 12 bp overlap

ESR1 2 datasets

ChIP Ishikawa_siNTC-96h GSE129803.ESR1.Ishikawa_siNTC-96h 57 bp overlap

ChIP T-47D_D538G_E2 GSE148277.ESR1.T-47D_D538G_E2 86 bp overlap

INSM1 1 dataset

Motif DE_12h DE_12h-INSM1_MA0155.1 12 bp overlap

Ikzf3 1 dataset

Motif DE_12h DE_12h-Ikzf3_MA1992.2 9 bp overlap

KLF11 1 dataset

Motif DE_12h DE_12h-KLF11_MA1512.2 10 bp overlap

KLF13 1 dataset

Motif DE_12h DE_12h-KLF13_MA0657.2 17 bp overlap

MAX 1 dataset

ChIP Ishikawa ENCFF064TDQ 416 bp overlap

MED26 1 dataset

ChIP U2OS_SHCTR GSE73742.MED26.U2OS_SHCTR 122 bp overlap

POU5F1_M 1 dataset

ChIP DE_D1 DED1-OCT4-M_Batch_II 368 bp overlap

RORC 1 dataset

ChIP HCC70_XY018 GSE126380.RORC.HCC70_XY018 172 bp overlap

RUVBL2 1 dataset

ChIP U2OS GSE130602.RUVBL2.U2OS 217 bp overlap

SMAD2_3 1 dataset

ChIP ESC S23-ESC-d0-SMAD2_3-exp1 265 bp overlap

SMARCA4 2 datasets

ChIP 22Rv1 GSE115615.SMARCA4.22Rv1 142 bp overlap

ChIP 22Rv1_PTEN-KO GSE115615.SMARCA4.22Rv1_PTEN-KO 155 bp overlap

SMARCC1 1 dataset

ChIP ESC S25-ESC-d0-BAF155-exp1 325 bp overlap

SOX17_M 1 dataset

ChIP DE_D2 DED2-SOX17-M_Batch_II 333 bp overlap

SP3 1 dataset

Motif DE_12h DE_12h-SP3_MA0746.3 11 bp overlap

SP8 1 dataset

Motif DE_12h DE_12h-SP8_MA0747.2 11 bp overlap

SP9 1 dataset

Motif DE_12h DE_12h-SP9_MA1564.2 10 bp overlap

SPDEF 1 dataset

Motif DE_12h DE_12h-SPDEF_MA0686.2 10 bp overlap

TAF1 1 dataset

ChIP Ishikawa ENCFF271ZVL 372 bp overlap

TCF12 1 dataset

ChIP Ishikawa ENCFF467DDW 471 bp overlap

TFAP2A 1 dataset

Motif DE_12h DE_12h-TFAP2A_MA0003.5 9 bp overlap

TFAP2B 1 dataset

Motif DE_12h DE_12h-TFAP2B_MA0812.2 9 bp overlap

TFAP2C 1 dataset

Motif DE_12h DE_12h-TFAP2C_MA0814.3 9 bp overlap

TFAP2E 1 dataset

Motif DE_12h DE_12h-TFAP2E_MA1569.2 9 bp overlap

TP53 1 dataset

ChIP U2OS_NUT GSE46641.TP53.U2OS_NUT 139 bp overlap

TP63 1 dataset

ChIP SUIT-2 GSE115461.TP63.SUIT-2 52 bp overlap

TRIM24 1 dataset

ChIP LNCaP-abl_ETOH GSE69331.TRIM24.LNCaP-abl_ETOH 578 bp overlap

Tfcp2l1 1 dataset

Motif DE_12h DE_12h-Tfcp2l1_MA0145.2 14 bp overlap

ZBED4 1 dataset

Motif DE_12h DE_12h-ZBED4_MA2328.1 10 bp overlap

ZBTB48 1 dataset

ChIP U2OS GSE96776.ZBTB48.U2OS 209 bp overlap

ZBTB6 2 datasets

Motif DE_12h DE_12h-ZBTB6_MA1581.2 9 bp overlap

ZBTB7A 1 dataset

ChIP Ishikawa ENCFF191NFH 571 bp overlap

ZFX 5 datasets

ChIP C4-2B ENCFF652WZM 364 bp overlap

ChIP HEK293T_22Rv1 GSE145160.ZFX.HEK293T_22Rv1 50 bp overlap

ChIP HEK293T_22Rv1 GSE145160.ZFX.HEK293T_22Rv1 313 bp overlap

ChIP LNCaP-C4-2B GSE102616.ZFX.LNCaP-C4-2B 202 bp overlap

ChIP LNCaP-C4-2B ENCSR027UFT.ZFX.LNCaP-C4-2B 200 bp overlap

ZFY 1 dataset

ChIP HEK293T_22Rv1 GSE145160.ZFY.HEK293T_22Rv1 223 bp overlap

ZNF16 1 dataset

Motif DE_12h DE_12h-ZNF16_MA1654.2 21 bp overlap

ZNF213 2 datasets

Motif DE_12h DE_12h-ZNF213_MA2121.1 12 bp overlap

ZNF416 1 dataset

Motif DE_12h DE_12h-ZNF416_MA1979.2 10 bp overlap

ZNF610 1 dataset

Motif DE_12h DE_12h-ZNF610_MA1713.2 10 bp overlap

ZNF682 1 dataset

Motif DE_12h DE_12h-ZNF682_MA1599.2 11 bp overlap

ZNF711 1 dataset

ChIP HEK293T_22Rv1 GSE145160.ZNF711.HEK293T_22Rv1 286 bp overlap