chr8 : 54,460,471 54,462,305
1,834 bp 40 TFs 2 linked genes
This 1.8 kb open chromatin element is linked to SOX17 and ENSG00000274310 and is bound by 40 transcription factors.
Linked Genes
2 genes
Gene Expression Dist. to TSS Distance Link type
SOX17 2.5 kb Proximal Proximity
ENSG00000274310 4.9 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr8:54,455,471 – 54,467,305
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
40 transcription factors
Source
Cell type
AR 1 dataset
ChIP LHSAR_HOXB13 GSE56288.AR.LHSAR_HOXB13 216 bp overlap
ARID2 2 datasets
ChIP BIN-67_ctrl GSE117734.ARID2.BIN-67_ctrl 1406 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.ARID2.BIN-67_lentivirus-SMARCA4-K785R 219 bp overlap
CBX8 1 dataset
ChIP H1 ENCFF095JHA 577 bp overlap
DPF2 5 datasets
ChIP BIN-67 GSE117734.DPF2.BIN-67 857 bp overlap
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.DPF2.BIN-67_lentivirus-SMARCA4 852 bp overlap
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.DPF2.BIN-67_lentivirus-SMARCA4 171 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.DPF2.BIN-67_lentivirus-SMARCA4-K785R 243 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.DPF2.BIN-67_lentivirus-SMARCA4-K785R 235 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 140 bp overlap
EZH2 17 datasets
ChIP GM23248 ENCFF404ZHM 110 bp overlap
ChIP GM23248 ENCFF404ZHM 337 bp overlap
ChIP GM23248 ENCSR131FFJ.EZH2.GM23248 498 bp overlap
ChIP GM23338 ENCFF613YON 385 bp overlap
ChIP H1 ENCFF232NZA 224 bp overlap
ChIP LNCaP-abl GSE39459.EZH2.LNCaP-abl 744 bp overlap
ChIP astrocyte ENCSR000ARR.EZH2.astrocyte 272 bp overlap
ChIP astrocyte ENCSR000ARR.EZH2.astrocyte 666 bp overlap
ChIP dermal-fibroblast_Preneoplastic GSE126396.EZH2.dermal-fibroblast_Preneoplastic 524 bp overlap
ChIP dermal-fibroblast_Untransformed GSE126396.EZH2.dermal-fibroblast_Untransformed 275 bp overlap
ChIP fibroblast_LUNG ENCSR000ARO.EZH2.fibroblast_LUNG 190 bp overlap
ChIP myotube ENCFF857GWB 471 bp overlap
ChIP myotube ENCSR000ASZ.EZH2.myotube 622 bp overlap
ChIP neural progenitor cell ENCFF018MKA 110 bp overlap
ChIP neural progenitor cell ENCFF018MKA 830 bp overlap
ChIP neural progenitor cell ENCFF018MKA 583 bp overlap
ChIP neural progenitor cell ENCFF472NFV 1481 bp overlap
FLI1 1 dataset
ChIP A-673_1_KRAB_GFP GSE106914.FLI1.A-673_1_KRAB_GFP 175 bp overlap
FOXA2 1 dataset
ChIP DE DE-FOXA2-1 807 bp overlap
GATA2 1 dataset
ChIP dermal-fibroblast_alone GSE51025.GATA2.dermal-fibroblast_alone 144 bp overlap
GATA3 1 dataset
ChIP Jurkat GSE76181.GATA3.Jurkat 256 bp overlap
GATA4 5 datasets
ChIP DE DE-GATA4-1 670 bp overlap
ChIP DE DE-GATA4-2 824 bp overlap
ChIP DE DE-GATA4-2 296 bp overlap
ChIP Hep-G2 GSE135714.GATA4.Hep-G2 190 bp overlap
ChIP foregut GSE117136.GATA4.foregut 263 bp overlap
GATA6 10 datasets
ChIP DE DE-GATA6-1 757 bp overlap
ChIP DE DE-GATA6-2 752 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 437 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 868 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 584 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 846 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 252 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 868 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 611 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 442 bp overlap
JARID2 6 datasets
ChIP EDOMIPS2 GSE48516.JARID2.EDOMIPS2 257 bp overlap
ChIP MRC-5_IPS25_CTR GSE48515.JARID2.MRC-5_IPS25_CTR 787 bp overlap
ChIP MRC-5_IPS25_CTR GSE48515.JARID2.MRC-5_IPS25_CTR 280 bp overlap
ChIP MRC-5_IPS25_MEG3 GSE48515.JARID2.MRC-5_IPS25_MEG3 354 bp overlap
ChIP UTEIPS6 GSE48516.JARID2.UTEIPS6 288 bp overlap
ChIP UTEIPS6 GSE48516.JARID2.UTEIPS6 266 bp overlap
JUN 2 datasets
ChIP HAEC_TNFa_4h GSE89970.JUN.HAEC_TNFa_4h 163 bp overlap
ChIP HAEC_oxpapc_4h GSE89970.JUN.HAEC_oxpapc_4h 130 bp overlap
KMT2C 1 dataset
ChIP BIN-67_ctrl GSE117734.KMT2C.BIN-67_ctrl 606 bp overlap
KMT2D 1 dataset
ChIP BIN-67_ctrl GSE117734.KMT2D.BIN-67_ctrl 637 bp overlap
LMO1 1 dataset
ChIP Jurkat GSE94391.LMO1.Jurkat 238 bp overlap
MYB 1 dataset
ChIP Jurkat GSE59657.MYB.Jurkat 221 bp overlap
MYBL2 1 dataset
ChIP A-673 GSE119971.MYBL2.A-673 102 bp overlap
NOTCH1 3 datasets
ChIP HPBALL GSE39263.NOTCH1.HPBALL 332 bp overlap
ChIP pulmonary-artery_endothelial-cell_siCtrl GSE89786.NOTCH1.pulmonary-artery_endothelial-cell_siCtrl 1060 bp overlap
ChIP pulmonary-artery_endothelial-cell_siPFKFB3 GSE89786.NOTCH1.pulmonary-artery_endothelial-cell_siPFKFB3 265 bp overlap
PCGF1 1 dataset
ChIP WA01 GSE104690.PCGF1.WA01 270 bp overlap
PCGF2 1 dataset
ChIP fibroblast_MET GSE55605.PCGF2.fibroblast_MET 193 bp overlap
POLR2A 8 datasets
ChIP endothelial cell of umbilical vein ENCFF091YHT 405 bp overlap
ChIP endothelial cell of umbilical vein ENCFF091YHT 405 bp overlap
ChIP endothelial cell of umbilical vein ENCFF131DWO 201 bp overlap
ChIP endothelial cell of umbilical vein ENCFF131DWO 201 bp overlap
ChIP endothelial cell of umbilical vein ENCFF303XUJ 461 bp overlap
ChIP endothelial cell of umbilical vein ENCFF467WJF 537 bp overlap
ChIP endothelial cell of umbilical vein ENCFF467WJF 537 bp overlap
ChIP endothelial cell of umbilical vein ENCFF467WJF 537 bp overlap
POU5F1 1 dataset
ChIP HUES-8 GSE109524.POU5F1.HUES-8 548 bp overlap
RELA 14 datasets
ChIP HAEC_TNFa_4h GSE89970.RELA.HAEC_TNFa_4h 139 bp overlap
ChIP aortic-endothelial-cell_IL1B_D13 GSE139377.RELA.aortic-endothelial-cell_IL1B_D13 350 bp overlap
ChIP aortic-endothelial-cell_IL1B_D14 GSE139377.RELA.aortic-endothelial-cell_IL1B_D14 185 bp overlap
ChIP aortic-endothelial-cell_IL1B_D16 GSE139377.RELA.aortic-endothelial-cell_IL1B_D16 240 bp overlap
ChIP aortic-endothelial-cell_IL1B_D38 GSE139377.RELA.aortic-endothelial-cell_IL1B_D38 104 bp overlap
ChIP aortic-endothelial-cell_IL1B_D4 GSE139377.RELA.aortic-endothelial-cell_IL1B_D4 233 bp overlap
ChIP aortic-endothelial-cell_IL1B_D45 GSE139377.RELA.aortic-endothelial-cell_IL1B_D45 205 bp overlap
ChIP aortic-endothelial-cell_IL1B_D47 GSE139377.RELA.aortic-endothelial-cell_IL1B_D47 83 bp overlap
ChIP aortic-endothelial-cell_IL1B_D47 GSE139377.RELA.aortic-endothelial-cell_IL1B_D47 204 bp overlap
ChIP aortic-endothelial-cell_IL1B_D47 GSE139377.RELA.aortic-endothelial-cell_IL1B_D47 163 bp overlap
ChIP aortic-endothelial-cell_IL1B_D49 GSE139377.RELA.aortic-endothelial-cell_IL1B_D49 184 bp overlap
ChIP aortic-endothelial-cell_IL1B_D49 GSE139377.RELA.aortic-endothelial-cell_IL1B_D49 201 bp overlap
ChIP aortic-endothelial-cell_IL1B_D9 GSE139377.RELA.aortic-endothelial-cell_IL1B_D9 313 bp overlap
ChIP aortic-endothelial-cell_IL1B_D9 GSE139377.RELA.aortic-endothelial-cell_IL1B_D9 1001 bp overlap
RING1 1 dataset
ChIP SYO-1_shRING1A-B GSE139053.RING1.SYO-1_shRING1A-B 74 bp overlap
RNF2 6 datasets
ChIP H1 ENCFF239FFS 725 bp overlap
ChIP SYO-1_shCt GSE139053.RNF2.SYO-1_shCt 1273 bp overlap
ChIP SYO-1_shCt GSE139053.RNF2.SYO-1_shCt 410 bp overlap
ChIP WA01 GSE104690.RNF2.WA01 1471 bp overlap
ChIP fibroblast GSE139053.RNF2.fibroblast 190 bp overlap
ChIP fibroblast GSE139053.RNF2.fibroblast 327 bp overlap
RYBP 1 dataset
ChIP WA01 GSE104690.RYBP.WA01 201 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 408 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 555 bp overlap
SMAD2_3 2 datasets
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 274 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 418 bp overlap
SMARCA4 4 datasets
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4 418 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4-K785R 258 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4-K785R 447 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4-T910M 1340 bp overlap
SMARCC1 3 datasets
ChIP BIN-67_ctrl GSE117734.SMARCC1.BIN-67_ctrl 704 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.SMARCC1.BIN-67_lentivirus-SMARCA4-K785R 217 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.SMARCC1.BIN-67_lentivirus-SMARCA4-T910M 1042 bp overlap
SMC1 1 dataset
ChIP HCAEC GSE101921.SMC1.HCAEC 342 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 219 bp overlap
SS18 4 datasets
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.SS18.BIN-67_lentivirus-SMARCA4 214 bp overlap
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.SS18.BIN-67_lentivirus-SMARCA4 516 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.SS18.BIN-67_lentivirus-SMARCA4-K785R 508 bp overlap
ChIP SYO-1_shRING1A-B GSE139053.SS18.SYO-1_shRING1A-B 340 bp overlap
SUPT5H 1 dataset
ChIP U2OS_siCtrl GSE115365.SUPT5H.U2OS_siCtrl 137 bp overlap
SUZ12 9 datasets
ChIP Aska-SS GSE108025.SUZ12.Aska-SS 759 bp overlap
ChIP CRL-7250_shSS18-SSX GSE108025.SUZ12.CRL-7250_shSS18-SSX 642 bp overlap
ChIP H1 ENCFF881NFR 143 bp overlap
ChIP H1 ENCFF881NFR 901 bp overlap
ChIP H1 ENCFF881NFR 1034 bp overlap
ChIP H1 ENCFF881NFR 394 bp overlap
ChIP NT2-D1 ENCSR000EXH.SUZ12.NT2-D1 543 bp overlap
ChIP NT2-D1 ENCSR000EXH.SUZ12.NT2-D1 227 bp overlap
ChIP NT2-D1 ENCSR000EXH.SUZ12.NT2-D1 240 bp overlap
TCF12 1 dataset
ChIP WA01 ENCSR000BIT.TCF12.WA01 147 bp overlap
TEAD4 1 dataset
ChIP Ishikawa ENCSR000BSW.TEAD4.Ishikawa 228 bp overlap