chr6 : 105,813,832 – 105,814,551
719 bp 69 TFs 1 linked gene
This 719 bp open chromatin element is linked to PRDM1 and is bound by 69 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
PRDM1 272.3 kb Distal Multiome+HiCAR
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr6:105,808,832 – 105,819,551
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
69 transcription factors
Source
Cell type
BRD2 1 dataset
ChIP K-562_DMSO GSE138084.BRD2.K-562_DMSO 164 bp overlap
BRD3 1 dataset
ChIP K-562_DMSO GSE138084.BRD3.K-562_DMSO 175 bp overlap
BRD4 8 datasets
ChIP K-562_DMSO GSE138084.BRD4.K-562_DMSO 152 bp overlap
ChIP K-562_DMSO-IFNG GSE138084.BRD4.K-562_DMSO-IFNG 240 bp overlap
ChIP K-562_iBET-BD1-IFNG GSE138084.BRD4.K-562_iBET-BD1-IFNG 139 bp overlap
ChIP K-562_iBET-BD2-IFNG GSE138084.BRD4.K-562_iBET-BD2-IFNG 80 bp overlap
ChIP K-562_iBET-IFNG GSE138084.BRD4.K-562_iBET-IFNG 98 bp overlap
ChIP KK-1_DMSO GSE94732.BRD4.KK-1_DMSO 97 bp overlap
ChIP KK-1_DMSO GSE94732.BRD4.KK-1_DMSO 514 bp overlap
ChIP KOPT-K1 GSE54379.BRD4.KOPT-K1 301 bp overlap
CTBP1 2 datasets
ChIP K-562 ENCSR201NQZ.CTBP1.K-562 193 bp overlap
ChIP K562 ENCFF403WPG 235 bp overlap
CTCF 11 datasets
Motif DE_60h DE_60h-CTCF_MA0139.2 15 bp overlap
Motif DE_60h DE_60h-CTCF_MA1929.2 31 bp overlap
Motif DE_72h DE_72h-CTCF_MA1929.2 31 bp overlap
ChIP DND-41 ENCFF913MRA 267 bp overlap
ChIP K-562_MonoC GSE137216.CTCF.K-562_MonoC 257 bp overlap
ChIP K562 ENCFF082GOI 185 bp overlap
ChIP MCF-7 ENCFF198DQX 204 bp overlap
ChIP MCF-7 ENCFF494VXA 204 bp overlap
ChIP MCF-7 ENCSR560BUE.CTCF.MCF-7 166 bp overlap
ChIP MCF-7 ENCSR000DMR.CTCF.MCF-7 195 bp overlap
ChIP endodermal cell ENCFF471YCZ 338 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF274GAT 187 bp overlap
DACH1 1 dataset
ChIP K562 ENCFF574LOW 381 bp overlap
DUX4 1 dataset
Motif DE_60h DE_60h-DUX4_MA0468.1 11 bp overlap
DUXA 1 dataset
Motif DE_60h DE_60h-DUXA_MA0884.2 13 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 241 bp overlap
ERG 1 dataset
ChIP TSU-1621MT_ATRA GSE60477.ERG.TSU-1621MT_ATRA 136 bp overlap
ESR2 2 datasets
Motif DE_60h DE_60h-ESR2_MA0258.2 15 bp overlap
Motif DE_72h DE_72h-ESR2_MA0258.2 15 bp overlap
ETV2::FIGLA 2 datasets
Motif DE_60h DE_60h-ETV2FIGLA_MA1941.2 13 bp overlap
Motif DE_72h DE_72h-ETV2FIGLA_MA1941.2 13 bp overlap
EWSR1-FLI1 2 datasets
Motif DE_60h DE_60h-EWSR1-FLI1_MA0149.1 18 bp overlap
Motif DE_72h DE_72h-EWSR1-FLI1_MA0149.1 18 bp overlap
EZH2_phosphoT487 1 dataset
ChIP hepatocyte ENCSR341VYI.EZH2_phosphoT487.hepatocyte 213 bp overlap
FOSL2 1 dataset
Motif DE_60h DE_60h-FOSL2_MA0478.2 10 bp overlap
FOXA1 1 dataset
ChIP NCI-H3122 GSE39998.FOXA1.NCI-H3122 160 bp overlap
FOXA2 4 datasets
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.FOXA2.BJ1-hTERT_FOXA2_GATA4_Coexp 223 bp overlap
ChIP Caco-2 GSE66218.FOXA2.Caco-2 169 bp overlap
ChIP DE DE-FOXA2-1 686 bp overlap
ChIP DE DE-FOXA2-2 539 bp overlap
FOXP2 2 datasets
Motif DE_60h DE_60h-FOXP2_MA0593.2 9 bp overlap
Motif DE_72h DE_72h-FOXP2_MA0593.2 9 bp overlap
Foxl2 2 datasets
Motif DE_60h DE_60h-Foxl2_MA1607.2 10 bp overlap
Motif DE_72h DE_72h-Foxl2_MA1607.2 10 bp overlap
GATA1 2 datasets
ChIP CD34_ERYTH_BIO GSE29194.GATA1.CD34_ERYTH_BIO 155 bp overlap
ChIP K-562 GSE107726.GATA1.K-562 186 bp overlap
GATA4 6 datasets
ChIP DE DE-GATA4-1 719 bp overlap
ChIP DE DE-GATA4-2 719 bp overlap
ChIP YCC-3 GSE51705.GATA4.YCC-3 327 bp overlap
ChIP foregut GSE117136.GATA4.foregut 641 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 630 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 404 bp overlap
GATA6 20 datasets
ChIP AGS GSE51705.GATA6.AGS 541 bp overlap
ChIP AGS GSE51936.GATA6.AGS 134 bp overlap
ChIP Caco-2_DIFF GSE23436.GATA6.Caco-2_DIFF 98 bp overlap
ChIP Caco-2_PROLIF GSE23436.GATA6.Caco-2_PROLIF 337 bp overlap
ChIP DE DE-GATA6-1 680 bp overlap
ChIP DE DE-GATA6-2 719 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 398 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 412 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 362 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 557 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 499 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 554 bp overlap
ChIP KATO-III GSE51705.GATA6.KATO-III 211 bp overlap
ChIP YCC-3 GSE51705.GATA6.YCC-3 484 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 535 bp overlap
ChIP foregut GSE117136.GATA6.foregut 510 bp overlap
ChIP foregut_KO GSE117136.GATA6.foregut_KO 385 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 593 bp overlap
ChIP pancreatic-progenitor_KO GSE117136.GATA6.pancreatic-progenitor_KO 545 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 468 bp overlap
GATAD2B 1 dataset
ChIP K562 ENCFF696VMK 401 bp overlap
HDAC1 1 dataset
ChIP K-562 ENCSR387UWP.HDAC1.K-562 203 bp overlap
HMBOX1 1 dataset
ChIP K-562 ENCSR757IIU.HMBOX1.K-562 205 bp overlap
HNF4A 1 dataset
ChIP KATO-III GSE114018.HNF4A.KATO-III 186 bp overlap
ID3 1 dataset
ChIP K-562 ENCSR005NMT.ID3.K-562 98 bp overlap
IKZF1 1 dataset
ChIP K562 ENCFF348IBL 179 bp overlap
Irf1 2 datasets
Motif DE_60h DE_60h-Irf1_MA0050.4 11 bp overlap
Motif DE_72h DE_72h-Irf1_MA0050.4 11 bp overlap
Isl1 1 dataset
Motif DE_60h DE_60h-Isl1_MA1608.2 7 bp overlap
KLF5 3 datasets
Motif DE_60h DE_60h-KLF5_MA0599.1 10 bp overlap
Motif DE_60h DE_60h-KLF5_MA0599.1 10 bp overlap
Motif DE_72h DE_72h-KLF5_MA0599.1 10 bp overlap
LMO2 1 dataset
ChIP CCRF-CEM GSE33850.LMO2.CCRF-CEM 121 bp overlap
MAZ 2 datasets
Motif DE_60h DE_60h-MAZ_MA1522.2 8 bp overlap
Motif DE_72h DE_72h-MAZ_MA1522.2 8 bp overlap
MEF2C 2 datasets
Motif DE_60h DE_60h-MEF2C_MA0497.2 11 bp overlap
Motif DE_72h DE_72h-MEF2C_MA0497.2 11 bp overlap
MSC 2 datasets
Motif DE_60h DE_60h-MSC_MA0665.1 10 bp overlap
Motif DE_72h DE_72h-MSC_MA0665.1 10 bp overlap
Mecom 2 datasets
Motif DE_60h DE_60h-Mecom_MA0029.2 11 bp overlap
Motif DE_72h DE_72h-Mecom_MA0029.2 11 bp overlap
NFATC3 2 datasets
Motif DE_60h DE_60h-NFATC3_MA0625.3 6 bp overlap
Motif DE_72h DE_72h-NFATC3_MA0625.3 6 bp overlap
NFIX 2 datasets
Motif DE_60h DE_60h-NFIX_MA1528.2 14 bp overlap
Motif DE_72h DE_72h-NFIX_MA1528.2 14 bp overlap
NKX2-1 1 dataset
ChIP NCI-H3122 GSE39998.NKX2-1.NCI-H3122 234 bp overlap
NKX2-5 1 dataset
Motif DE_60h DE_60h-NKX2-5_MA0063.3 7 bp overlap
Nfatc1 2 datasets
Motif DE_60h DE_60h-Nfatc1_MA0624.3 6 bp overlap
Motif DE_72h DE_72h-Nfatc1_MA0624.3 6 bp overlap
Nr1h3::Rxra 1 dataset
Motif DE_60h DE_60h-Nr1h3Rxra_MA0494.2 16 bp overlap
PRDM9 2 datasets
Motif DE_60h DE_60h-PRDM9_MA1723.2 20 bp overlap
Motif DE_72h DE_72h-PRDM9_MA1723.2 20 bp overlap
Plagl1 2 datasets
Motif DE_60h DE_60h-Plagl1_MA1615.2 8 bp overlap
Motif DE_72h DE_72h-Plagl1_MA1615.2 8 bp overlap
Prdm15 2 datasets
Motif DE_60h DE_60h-Prdm15_MA1616.2 11 bp overlap
Motif DE_72h DE_72h-Prdm15_MA1616.2 11 bp overlap
RAD21 6 datasets
ChIP K562 ENCFF634XYR 287 bp overlap
ChIP MCF-7 ENCFF694KOM 261 bp overlap
ChIP MCF-7 ENCFF724VCQ 239 bp overlap
ChIP MCF-7 ENCSR000BTQ.RAD21.MCF-7 201 bp overlap
ChIP MCF-7 GSE72082.RAD21.MCF-7 185 bp overlap
ChIP MCF-7 ENCSR703TNG.RAD21.MCF-7 170 bp overlap
RUNX1 2 datasets
ChIP ME-1 GSE46044.RUNX1.ME-1 65 bp overlap
ChIP SKNO-1 GSE23730.RUNX1.SKNO-1 83 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 423 bp overlap
SMAD2_3 1 dataset
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 417 bp overlap
SMARCA4 3 datasets
ChIP CTV-1_FLAG GSE128835.SMARCA4.CTV-1_FLAG 82 bp overlap
ChIP K-562 ENCSR587OQL.SMARCA4.K-562 357 bp overlap
ChIP K-562 ENCSR587OQL.SMARCA4.K-562 103 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 551 bp overlap
SOX6 1 dataset
ChIP K-562 ENCSR788RSW.SOX6.K-562 175 bp overlap
SP4 2 datasets
Motif DE_60h DE_60h-SP4_MA0685.2 9 bp overlap
Motif DE_72h DE_72h-SP4_MA0685.2 9 bp overlap
SP5 2 datasets
Motif DE_60h DE_60h-SP5_MA1965.2 6 bp overlap
Motif DE_72h DE_72h-SP5_MA1965.2 6 bp overlap
STAT1_pS727 1 dataset
ChIP SET-2 GSE100566.STAT1_pS727.SET-2 270 bp overlap
Stat2 2 datasets
Motif DE_60h DE_60h-Stat2_MA1623.2 10 bp overlap
Motif DE_72h DE_72h-Stat2_MA1623.2 10 bp overlap
TFAP4::ETV1 2 datasets
Motif DE_60h DE_60h-TFAP4ETV1_MA1966.2 13 bp overlap
Motif DE_72h DE_72h-TFAP4ETV1_MA1966.2 13 bp overlap
TFAP4::FLI1 2 datasets
Motif DE_60h DE_60h-TFAP4FLI1_MA1967.2 14 bp overlap
Motif DE_72h DE_72h-TFAP4FLI1_MA1967.2 14 bp overlap
Tcf21 2 datasets
Motif DE_60h DE_60h-Tcf21_MA0832.2 10 bp overlap
Motif DE_72h DE_72h-Tcf21_MA0832.2 10 bp overlap
ZEB2 2 datasets
ChIP K-562 ENCSR322CFO.ZEB2.K-562 157 bp overlap
ChIP K-562 ENCSR322CFO.ZEB2.K-562 151 bp overlap
ZNF140 1 dataset
Motif DE_60h DE_60h-ZNF140_MA1589.2 19 bp overlap
ZNF148 2 datasets
Motif DE_60h DE_60h-ZNF148_MA1653.2 10 bp overlap
Motif DE_72h DE_72h-ZNF148_MA1653.2 10 bp overlap
ZNF384 1 dataset
ChIP K-562 ENCSR000EFP.ZNF384.K-562 62 bp overlap
ZNF558 2 datasets
Motif DE_60h DE_60h-ZNF558_MA2335.1 29 bp overlap
Motif DE_72h DE_72h-ZNF558_MA2335.1 29 bp overlap
ZNF582 1 dataset
Motif DE_60h DE_60h-ZNF582_MA1983.2 19 bp overlap
ZNF592 1 dataset
ChIP K-562 ENCSR249BHQ.ZNF592.K-562 268 bp overlap
ZNF675 2 datasets
Motif DE_60h DE_60h-ZNF675_MA1714.2 19 bp overlap
Motif DE_72h DE_72h-ZNF675_MA1714.2 19 bp overlap
ZNF750 1 dataset
ChIP keratinocyte_diff GSE57702.ZNF750.keratinocyte_diff 199 bp overlap
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