chr5 : 164,498,482 164,498,717
235 bp 61 TFs 0 linked genes
This 235 bp open chromatin element has no linked target genes and is bound by 61 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr5:164,493,482 – 164,503,717
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
61 transcription factors
Source
Cell type
ARGFX 1 dataset
Motif ES_0h ES_0h-ARGFX_MA1463.2 8 bp overlap
Arx 1 dataset
Motif ES_0h ES_0h-Arx_MA0874.2 10 bp overlap
BARX1 1 dataset
Motif ES_0h ES_0h-BARX1_MA0875.2 6 bp overlap
BRD4 5 datasets
ChIP BE2C GSE80151.BRD4.BE2C 220 bp overlap
ChIP SK-N-BE2-C GSE80151.BRD4.SK-N-BE2-C 220 bp overlap
ChIP cortical-interneuron GSE117508.BRD4.cortical-interneuron 175 bp overlap
ChIP cortical-interneuron_R133C_KCl-pos_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-pos_JQ1-neg 186 bp overlap
ChIP cortical-interneuron_R133C_KCl-pos_JQ1-pos GSE117508.BRD4.cortical-interneuron_R133C_KCl-pos_JQ1-pos 143 bp overlap
BSX 1 dataset
Motif ES_0h ES_0h-BSX_MA0876.2 6 bp overlap
CHD7 2 datasets
ChIP H1 ENCFF126NLU 235 bp overlap
ChIP WA01 ENCSR000AVA.CHD7.WA01 146 bp overlap
DLX1 1 dataset
Motif ES_0h ES_0h-DLX1_MA0879.3 6 bp overlap
DLX6 1 dataset
Motif ES_0h ES_0h-DLX6_MA0882.2 6 bp overlap
Dlx2 1 dataset
Motif ES_0h ES_0h-Dlx2_MA0885.3 8 bp overlap
Dlx3 1 dataset
Motif ES_0h ES_0h-Dlx3_MA0880.2 6 bp overlap
Dlx4 1 dataset
Motif ES_0h ES_0h-Dlx4_MA0881.2 6 bp overlap
Dlx5 1 dataset
Motif ES_0h ES_0h-Dlx5_MA1476.3 8 bp overlap
EP300 1 dataset
ChIP WA01 ENCSR000BKK.EP300.WA01 129 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 235 bp overlap
ChIP DE DE-FOXA2-2 235 bp overlap
FOXP1 1 dataset
ChIP H9 GSE31006.FOXP1.H9 162 bp overlap
Foxl2 1 dataset
Motif ES_0h ES_0h-Foxl2_MA1607.2 10 bp overlap
GATA4 3 datasets
ChIP DE DE-GATA4-1 235 bp overlap
ChIP DE DE-GATA4-2 235 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 130 bp overlap
GATA6 9 datasets
ChIP DE DE-GATA6-1 209 bp overlap
ChIP DE DE-GATA6-2 235 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 170 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 213 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 159 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 84 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 235 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 196 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 135 bp overlap
GBX2 1 dataset
Motif ES_0h ES_0h-GBX2_MA0890.2 6 bp overlap
HAND2 1 dataset
ChIP SK-N-BE2-C GSE94822.HAND2.SK-N-BE2-C 179 bp overlap
HDAC2 1 dataset
ChIP WA01 ENCSR000BNR.HDAC2.WA01 127 bp overlap
HESX1 1 dataset
Motif ES_0h ES_0h-HESX1_MA0894.2 6 bp overlap
HOXA7 1 dataset
Motif ES_0h ES_0h-HOXA7_MA1498.3 6 bp overlap
ISL1 1 dataset
ChIP SK-N-BE2-C GSE94822.ISL1.SK-N-BE2-C 219 bp overlap
JUN 1 dataset
ChIP DE_D2 S02-DE-d2-JUN-exp1 222 bp overlap
LBX2 1 dataset
Motif ES_0h ES_0h-LBX2_MA0699.2 6 bp overlap
LHX2 1 dataset
Motif ES_0h ES_0h-LHX2_MA0700.3 6 bp overlap
LIN54 1 dataset
Motif ES_0h ES_0h-LIN54_MA0619.2 7 bp overlap
MSX1 1 dataset
Motif ES_0h ES_0h-MSX1_MA0666.3 6 bp overlap
MSX2 1 dataset
Motif ES_0h ES_0h-MSX2_MA0708.3 6 bp overlap
Msx3 1 dataset
Motif ES_0h ES_0h-Msx3_MA0709.2 6 bp overlap
NANOG 12 datasets
ChIP GM23338 ENCFF065NZG 235 bp overlap
ChIP GM23338 ENCFF065NZG 111 bp overlap
ChIP GM23338 ENCSR061DGF.NANOG.GM23338 156 bp overlap
ChIP H1 ENCFF747ZPQ 210 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 235 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 235 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 235 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 235 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 235 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 235 bp overlap
ChIP hESC GSE20650.NANOG.hESC 165 bp overlap
ChIP hESC GSE18292.NANOG.hESC 115 bp overlap
NEUROD1 1 dataset
ChIP D283-Med GSE92582.NEUROD1.D283-Med 231 bp overlap
Nobox 1 dataset
Motif ES_0h ES_0h-Nobox_MA0125.2 6 bp overlap
PHOX2B 1 dataset
ChIP SK-N-BE2-C GSE94822.PHOX2B.SK-N-BE2-C 235 bp overlap
POU1F1 1 dataset
Motif ES_0h ES_0h-POU1F1_MA0784.3 14 bp overlap
POU2F1 1 dataset
Motif ES_0h ES_0h-POU2F1_MA0785.2 9 bp overlap
POU2F2 1 dataset
Motif ES_0h ES_0h-POU2F2_MA0507.3 13 bp overlap
POU2F3 1 dataset
Motif ES_0h ES_0h-POU2F3_MA0627.3 9 bp overlap
POU3F1 1 dataset
Motif ES_0h ES_0h-POU3F1_MA0786.2 10 bp overlap
POU3F2 1 dataset
Motif ES_0h ES_0h-POU3F2_MA0787.1 12 bp overlap
POU3F3 1 dataset
Motif ES_0h ES_0h-POU3F3_MA0788.1 13 bp overlap
POU3F4 1 dataset
Motif ES_0h ES_0h-POU3F4_MA0789.1 9 bp overlap
POU5F1 14 datasets
ChIP GM23338 ENCFF333SNB 229 bp overlap
ChIP H1 ENCFF698ZAP 195 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 235 bp overlap
ChIP NCCIT GSE36134.POU5F1.NCCIT 151 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 235 bp overlap
ChIP WA01 ENCSR000BMU.POU5F1.WA01 228 bp overlap
ChIP WA09 GSE105028.POU5F1.WA09 235 bp overlap
ChIP WA09_heat-shock GSE105028.POU5F1.WA09_heat-shock 235 bp overlap
ChIP hESC ENCSR264RJX.POU5F1.hESC 176 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 235 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 235 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 197 bp overlap
ChIP hiPSC_3s2 GSE81899.POU5F1.hiPSC_3s2 226 bp overlap
ChIP neuron_bipolar_doxy_4d ENCSR362VCG.POU5F1.neuron_bipolar_doxy_4d 102 bp overlap
RAD21 1 dataset
ChIP HAP1 GSE152721.RAD21.HAP1 172 bp overlap
RAD51 1 dataset
ChIP GM12878 ENCSR482TWQ.RAD51.GM12878 73 bp overlap
RAX 1 dataset
Motif ES_0h ES_0h-RAX_MA0718.2 6 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 223 bp overlap
SMARCA4 5 datasets
ChIP BT-16_Dox GSE71504.SMARCA4.BT-16_Dox 163 bp overlap
ChIP NSC GSE125033.SMARCA4.NSC 235 bp overlap
ChIP WA09_heat-shock GSE105028.SMARCA4.WA09_heat-shock 145 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 235 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 235 bp overlap
SMARCB1 2 datasets
ChIP hiPSC GSE124903.SMARCB1.hiPSC 222 bp overlap
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 235 bp overlap
SMARCC1 3 datasets
ChIP BT-16_Dox GSE71504.SMARCC1.BT-16_Dox 126 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 235 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 235 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 211 bp overlap
SOX2 4 datasets
ChIP H9 GSE46837.SOX2.H9 106 bp overlap
ChIP RENVM GSE49404.SOX2.RENVM 206 bp overlap
ChIP hESC GSE18292.SOX2.hESC 133 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 235 bp overlap
SP1 2 datasets
ChIP H1 ENCFF263FUH 235 bp overlap
ChIP WA01 ENCSR000BIR.SP1.WA01 199 bp overlap
ZNF16 1 dataset
Motif ES_0h ES_0h-ZNF16_MA1654.2 21 bp overlap
ZNF547 1 dataset
Motif ES_0h ES_0h-ZNF547_MA2334.1 13 bp overlap