chr5 : 139,277,192 139,277,580
388 bp 50 TFs 3 linked genes
This 388 bp open chromatin element is linked to SNORA74A, MATR3, and SNHG4 and is bound by 50 transcription factors.
Linked Genes
3 genes
Gene Expression Dist. to TSS Distance Link type
SNORA74A 1.2 kb Proximal Proximity
MATR3 3.1 kb Proximal Proximity
SNHG4 3.1 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr5:139,272,192 – 139,282,580
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
50 transcription factors
Source
Cell type
ARID1A 1 dataset
ChIP RMG-I GSE104545.ARID1A.RMG-I 189 bp overlap
ARID2 1 dataset
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.ARID2.BIN-67_lentivirus-SMARCA4 271 bp overlap
ARNT 1 dataset
ChIP K-562 ENCSR155KHM.ARNT.K-562 50 bp overlap
BCL3 1 dataset
ChIP A-549 ENCSR000BQH.BCL3.A-549 290 bp overlap
BRD1 1 dataset
ChIP HUES-64 GSE104059.BRD1.HUES-64 201 bp overlap
BRD3 1 dataset
ChIP K-562_DMSO GSE138084.BRD3.K-562_DMSO 152 bp overlap
BRD4 3 datasets
ChIP CHL-1 GSE95585.BRD4.CHL-1 250 bp overlap
ChIP SUM159PT_DMSO_48h GSE87418.BRD4.SUM159PT_DMSO_48h 168 bp overlap
ChIP SUM159PT_KO GSE131097.BRD4.SUM159PT_KO 355 bp overlap
CDK9 2 datasets
ChIP A-375 GSE128080.CDK9.A-375 157 bp overlap
ChIP A-375_DMSO GSE68052.CDK9.A-375_DMSO 316 bp overlap
CLOCK 1 dataset
ChIP BA40_0 GSE96659.CLOCK.BA40_0 151 bp overlap
E2F1 1 dataset
ChIP MDA-MB-231 GSE95303.E2F1.MDA-MB-231 364 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 290 bp overlap
ERG 3 datasets
ChIP aortic-endothelial-cell_D49 GSE139377.ERG.aortic-endothelial-cell_D49 207 bp overlap
ChIP aortic-endothelial-cell_D5 GSE139377.ERG.aortic-endothelial-cell_D5 158 bp overlap
ChIP aortic-endothelial-cell_D51 GSE139377.ERG.aortic-endothelial-cell_D51 213 bp overlap
ETS1 3 datasets
ChIP HEY-A8 GSE101832.ETS1.HEY-A8 388 bp overlap
ChIP HUVEC-C_VEGF_4H GSE41166.ETS1.HUVEC-C_VEGF_4H 184 bp overlap
ChIP OVCAR-8 GSE101832.ETS1.OVCAR-8 360 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 388 bp overlap
ChIP DE DE-FOXA2-2 347 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 388 bp overlap
ChIP DE DE-GATA4-2 388 bp overlap
GATA6 8 datasets
ChIP DE DE-GATA6-1 388 bp overlap
ChIP DE DE-GATA6-2 388 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 256 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 304 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 382 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 388 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 296 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 309 bp overlap
HDAC1 1 dataset
ChIP K-562 ENCSR711VWL.HDAC1.K-562 198 bp overlap
HDGF 2 datasets
ChIP K-562 ENCSR563YDA.HDGF.K-562 339 bp overlap
ChIP K-562 ENCSR197ALX.HDGF.K-562 388 bp overlap
IFNA1 2 datasets
ChIP Huh-7_GFP GSE110511.IFNA1.Huh-7_GFP 290 bp overlap
ChIP Huh-7_NS5 GSE110511.IFNA1.Huh-7_NS5 338 bp overlap
JUN 3 datasets
ChIP DE_D2 S02-DE-d2-JUN-exp1 350 bp overlap
ChIP HAEC_TNFa_4h GSE89970.JUN.HAEC_TNFa_4h 185 bp overlap
ChIP HAEC_oxpapc_4h GSE89970.JUN.HAEC_oxpapc_4h 130 bp overlap
KLF4 1 dataset
ChIP PDAC GSE64557.KLF4.PDAC 239 bp overlap
KMT2A 1 dataset
ChIP Hep-G2 ENCSR692GFR.KMT2A.Hep-G2 166 bp overlap
MIER1 1 dataset
ChIP K-562 ENCSR426MDV.MIER1.K-562 267 bp overlap
NANOG 1 dataset
ChIP WA09 GSE105028.NANOG.WA09 194 bp overlap
NBN 1 dataset
ChIP K-562 ENCSR085QEV.NBN.K-562 244 bp overlap
NEUROD1 3 datasets
ChIP D283-Med GSE92582.NEUROD1.D283-Med 155 bp overlap
ChIP D283-Med_shNEUROD1-1579 GSE92582.NEUROD1.D283-Med_shNEUROD1-1579 385 bp overlap
ChIP D341-Med_shGFP GSE92582.NEUROD1.D341-Med_shGFP 257 bp overlap
OTX2 1 dataset
ChIP WTC11 ENCFF634NAO 245 bp overlap
PAX5 1 dataset
ChIP fetal_testis GSE100639.PAX5.fetal_testis 153 bp overlap
PCBP2 1 dataset
ChIP Hep-G2 GSE120104.PCBP2.Hep-G2 177 bp overlap
PHIP 2 datasets
ChIP HCT-116_MLL4-SET-KO_ab833 GSE101646.PHIP.HCT-116_MLL4-SET-KO_ab833 278 bp overlap
ChIP HCT-116_ab834 GSE101646.PHIP.HCT-116_ab834 86 bp overlap
POLR2A 5 datasets
ChIP GM12878 ENCFF263VRI 326 bp overlap
ChIP GM12892 ENCFF245LYF 388 bp overlap
ChIP GM23338 ENCFF450WCS 127 bp overlap
ChIP H1 ENCFF833NJP 116 bp overlap
ChIP endothelial cell of umbilical vein ENCFF303XUJ 80 bp overlap
RBFOX2 2 datasets
ChIP HepG2 ENCFF554DMZ 109 bp overlap
ChIP HepG2 ENCFF939HTZ 109 bp overlap
RBPJ 3 datasets
ChIP GSC8-11 GSE74557.RBPJ.GSC8-11 216 bp overlap
ChIP GSC8-11_12d-das GSE74557.RBPJ.GSC8-11_12d-das 288 bp overlap
ChIP GSC8-11_dasatinib GSE74557.RBPJ.GSC8-11_dasatinib 297 bp overlap
RELA 4 datasets
ChIP HAEC_TNFa_4h GSE89970.RELA.HAEC_TNFa_4h 231 bp overlap
ChIP aortic-endothelial-cell_IL1B_D4 GSE139377.RELA.aortic-endothelial-cell_IL1B_D4 178 bp overlap
ChIP aortic-endothelial-cell_IL1B_D8 GSE139377.RELA.aortic-endothelial-cell_IL1B_D8 235 bp overlap
ChIP aortic-endothelial-cell_IL1B_D9 GSE139377.RELA.aortic-endothelial-cell_IL1B_D9 228 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 388 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 231 bp overlap
SMAD2_3 2 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 330 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 378 bp overlap
SMAD5 3 datasets
ChIP K-562 ENCSR000FCD.SMAD5.K-562 155 bp overlap
ChIP K-562 ENCSR000FCD.SMAD5.K-562 102 bp overlap
ChIP K562 ENCFF941FJJ 312 bp overlap
SMARCA4 3 datasets
ChIP 501-mel_SHCTR GSE61965.SMARCA4.501-mel_SHCTR 57 bp overlap
ChIP K-562 ENCSR587OQL.SMARCA4.K-562 388 bp overlap
ChIP endometrial-epithelial-cells_KO GSE106660.SMARCA4.endometrial-epithelial-cells_KO 388 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 319 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 333 bp overlap
SUPT5H 5 datasets
ChIP DLD-1_NELFCD-AID_treated GSE144786.SUPT5H.DLD-1_NELFCD-AID_treated 313 bp overlap
ChIP DLD-1_NELFE-AID GSE144786.SUPT5H.DLD-1_NELFE-AID 70 bp overlap
ChIP HCT-116_DMSO GSE138548.SUPT5H.HCT-116_DMSO 388 bp overlap
ChIP U2OS_DMSO GSE115365.SUPT5H.U2OS_DMSO 167 bp overlap
ChIP U2OS_siCtrl GSE115365.SUPT5H.U2OS_siCtrl 208 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 320 bp overlap
TBP 1 dataset
ChIP hESC_2h GSE122298.TBP.hESC_2h 149 bp overlap
TEAD4 1 dataset
ChIP SK-MEL-147 GSE94488.TEAD4.SK-MEL-147 208 bp overlap
WT1 2 datasets
ChIP HEK293 ENCFF906HIR 388 bp overlap
ChIP HEK293 ENCSR966PJJ.WT1.HEK293 246 bp overlap
YY1 1 dataset
ChIP Hep-G2_NC GSE120104.YY1.Hep-G2_NC 191 bp overlap
ZNF598 2 datasets
ChIP Hep-G2 ENCSR173NAL.ZNF598.Hep-G2 229 bp overlap
ChIP HepG2 ENCFF356UIO 362 bp overlap