chr1 : 94,148,998 94,149,784
786 bp 44 TFs 4 linked genes
This 786 bp open chromatin element is linked to 4 target genes and is bound by 44 transcription factors.
Linked Genes
4 genes
Gene Expression Dist. to TSS Distance Link type
ARHGAP29 88.3 kb Distal Multiome
GCLM 239.9 kb Distal Multiome
ABCD3 269.1 kb Distal Multiome
DNTTIP2 270.2 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:94,143,998 – 94,154,784
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
44 transcription factors
Source
Cell type
BACH2 1 dataset
Motif DE_12h DE_12h-BACH2_MA1470.2 19 bp overlap
BRD4 1 dataset
ChIP NMC24335 GSE96775.BRD4.NMC24335 124 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 600 bp overlap
ChIP DE DE-FOXA2-2 464 bp overlap
FOXL2 1 dataset
ChIP HGrC1_C134W-TGF_parental GSE138496.FOXL2.HGrC1_C134W-TGF_parental 126 bp overlap
FOXN3 1 dataset
Motif DE_12h DE_12h-FOXN3_MA1489.1 8 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 577 bp overlap
ChIP DE DE-GATA4-2 713 bp overlap
GATA6 14 datasets
ChIP DE DE-GATA6-1 512 bp overlap
ChIP DE DE-GATA6-2 679 bp overlap
Motif DE_12h DE_12h-GATA6_MA1104.3 8 bp overlap
Motif DE_12h DE_12h-GATA6_MA1104.3 8 bp overlap
Motif DE_36h DE_36h-GATA6_MA1104.3 8 bp overlap
Motif DE_48h DE_48h-GATA6_MA1104.3 8 bp overlap
Motif DE_48h DE_48h-GATA6_MA1104.3 8 bp overlap
Motif DE_60h DE_60h-GATA6_MA1104.3 8 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 679 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 786 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 672 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 652 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 292 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 616 bp overlap
Gata3 6 datasets
Motif DE_12h DE_12h-Gata3_MA0037.5 8 bp overlap
Motif DE_12h DE_12h-Gata3_MA0037.5 8 bp overlap
Motif DE_36h DE_36h-Gata3_MA0037.5 8 bp overlap
Motif DE_48h DE_48h-Gata3_MA0037.5 8 bp overlap
Motif DE_48h DE_48h-Gata3_MA0037.5 8 bp overlap
Motif DE_60h DE_60h-Gata3_MA0037.5 8 bp overlap
HMBOX1 1 dataset
Motif DE_12h DE_12h-HMBOX1_MA0895.2 7 bp overlap
Hnf1A 2 datasets
Motif DE_12h DE_12h-Hnf1A_MA1991.2 10 bp overlap
Motif DE_48h DE_48h-Hnf1A_MA1991.2 10 bp overlap
IRF3 2 datasets
Motif DE_12h DE_12h-IRF3_MA1418.2 17 bp overlap
Motif DE_48h DE_48h-IRF3_MA1418.2 17 bp overlap
JUN 2 datasets
ChIP DE_D1 S40-DE-d1-JUN-exp2 292 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 407 bp overlap
Lhx3 1 dataset
Motif DE_12h DE_12h-Lhx3_MA0135.2 12 bp overlap
Mecom 2 datasets
Motif DE_12h DE_12h-Mecom_MA0029.2 11 bp overlap
Motif DE_48h DE_48h-Mecom_MA0029.2 11 bp overlap
NUTM1 1 dataset
ChIP NMC24335 GSE96775.NUTM1.NMC24335 103 bp overlap
POU1F1 1 dataset
Motif DE_12h DE_12h-POU1F1_MA0784.3 14 bp overlap
POU2F1 1 dataset
Motif DE_12h DE_12h-POU2F1_MA0785.2 9 bp overlap
POU2F2 1 dataset
Motif DE_12h DE_12h-POU2F2_MA0507.3 13 bp overlap
POU3F1 1 dataset
Motif DE_12h DE_12h-POU3F1_MA0786.2 10 bp overlap
POU3F2 1 dataset
Motif DE_12h DE_12h-POU3F2_MA0787.1 12 bp overlap
POU3F3 1 dataset
Motif DE_12h DE_12h-POU3F3_MA0788.1 13 bp overlap
POU3F4 1 dataset
Motif DE_12h DE_12h-POU3F4_MA0789.1 9 bp overlap
POU5F1 1 dataset
ChIP DE_D1 DED1-OCT4_Batch_II 308 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 237 bp overlap
PPARA::RXRA 2 datasets
Motif DE_12h DE_12h-PPARARXRA_MA1148.2 17 bp overlap
Motif DE_48h DE_48h-PPARARXRA_MA1148.2 17 bp overlap
Pparg::Rxra 2 datasets
Motif DE_12h DE_12h-PpargRxra_MA0065.3 13 bp overlap
Motif DE_48h DE_48h-PpargRxra_MA0065.3 13 bp overlap
SIX1 2 datasets
Motif DE_12h DE_12h-SIX1_MA1118.2 9 bp overlap
Motif DE_48h DE_48h-SIX1_MA1118.2 9 bp overlap
SMAD2-3 4 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 291 bp overlap
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 299 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 644 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 628 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 714 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 745 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 716 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 736 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 786 bp overlap
SMARCC1 1 dataset
ChIP DE_D1 S15-DE-d1-BAF155-exp1 235 bp overlap
SP5 1 dataset
Motif DE_12h DE_12h-SP5_MA1965.2 6 bp overlap
Six4 2 datasets
Motif DE_12h DE_12h-Six4_MA2001.2 7 bp overlap
Motif DE_48h DE_48h-Six4_MA2001.2 7 bp overlap
Stat6 2 datasets
Motif DE_12h DE_12h-Stat6_MA0520.2 10 bp overlap
Motif DE_48h DE_48h-Stat6_MA0520.2 10 bp overlap
TCF7L1 2 datasets
Motif DE_12h DE_12h-TCF7L1_MA1421.1 12 bp overlap
Motif DE_48h DE_48h-TCF7L1_MA1421.1 12 bp overlap
TCF7L2 4 datasets
Motif DE_12h DE_12h-TCF7L2_MA0523.2 9 bp overlap
Motif DE_12h DE_12h-TCF7L2_MA0523.2 9 bp overlap
Motif DE_48h DE_48h-TCF7L2_MA0523.2 9 bp overlap
Motif DE_48h DE_48h-TCF7L2_MA0523.2 9 bp overlap
TRPS1 6 datasets
Motif DE_12h DE_12h-TRPS1_MA1970.2 8 bp overlap
Motif DE_12h DE_12h-TRPS1_MA1970.2 8 bp overlap
Motif DE_36h DE_36h-TRPS1_MA1970.2 8 bp overlap
Motif DE_48h DE_48h-TRPS1_MA1970.2 8 bp overlap
Motif DE_48h DE_48h-TRPS1_MA1970.2 8 bp overlap
Motif DE_60h DE_60h-TRPS1_MA1970.2 8 bp overlap
ZFP14 1 dataset
Motif DE_12h DE_12h-ZFP14_MA1972.1 15 bp overlap
ZNF184 2 datasets
Motif DE_12h DE_12h-ZNF184_MA2120.1 13 bp overlap
Motif DE_48h DE_48h-ZNF184_MA2120.1 13 bp overlap
ZNF382 4 datasets
Motif DE_12h DE_12h-ZNF382_MA1594.1 24 bp overlap
Motif DE_36h DE_36h-ZNF382_MA1594.1 24 bp overlap
Motif DE_48h DE_48h-ZNF382_MA1594.1 24 bp overlap
Motif DE_60h DE_60h-ZNF382_MA1594.1 24 bp overlap
ZNF549 4 datasets
Motif DE_12h DE_12h-ZNF549_MA1728.2 8 bp overlap
Motif DE_36h DE_36h-ZNF549_MA1728.2 8 bp overlap
Motif DE_48h DE_48h-ZNF549_MA1728.2 8 bp overlap
Motif DE_60h DE_60h-ZNF549_MA1728.2 8 bp overlap
ZSCAN16 1 dataset
Motif DE_12h DE_12h-ZSCAN16_MA2100.1 18 bp overlap