chr5 : 94,391,443 – 94,391,579
136 bp 63 TFs 0 linked genes
This 136 bp open chromatin element has no linked target genes and is bound by 63 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr5:94,386,443 – 94,396,579
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
63 transcription factors
Source
Cell type
AR 34 datasets
ChIP 22Rv1 GSE96652.AR.22Rv1 136 bp overlap
ChIP 22Rv1_R1881 GSE80742.AR.22Rv1_R1881 136 bp overlap
ChIP 22Rv1_siARFL_R1881 GSE80742.AR.22Rv1_siARFL_R1881 118 bp overlap
ChIP LAPC-4_R1881 GSE148358.AR.LAPC-4_R1881 132 bp overlap
ChIP LNCaP ERP001226.AR.LNCaP 120 bp overlap
ChIP LNCaP GSE110655.AR.LNCaP 114 bp overlap
ChIP LNCaP GSE85558.AR.LNCaP 86 bp overlap
ChIP LNCaP_DHTTHZ1 GSE125245.AR.LNCaP_DHTTHZ1 53 bp overlap
ChIP LNCaP_FOXA1 ERP003503.AR.LNCaP_FOXA1 136 bp overlap
ChIP LNCaP_SHCTR_DHT GSE62492.AR.LNCaP_SHCTR_DHT 63 bp overlap
ChIP LNCaP_Talen_DHT GSE89938.AR.LNCaP_Talen_DHT 67 bp overlap
ChIP LNCaP_r1881 GSE94682.AR.LNCaP_r1881 130 bp overlap
ChIP LNCaP_sgCHD1 GSE117430.AR.LNCaP_sgCHD1 136 bp overlap
ChIP LNCaP_sgCtrl GSE117430.AR.LNCaP_sgCtrl 136 bp overlap
ChIP MDA-MB-453 ERP001226.AR.MDA-MB-453 136 bp overlap
ChIP MDA-MB-453 ERP003503.AR.MDA-MB-453 136 bp overlap
ChIP MDA-MB-453_DHT GSE74069.AR.MDA-MB-453_DHT 136 bp overlap
ChIP MDA-MB-453_FOXA1 ERP003503.AR.MDA-MB-453_FOXA1 136 bp overlap
ChIP MDA-MB-453_MPA GSE74069.AR.MDA-MB-453_MPA 102 bp overlap
ChIP MDA-MB-453_R1881_SICTR GSE70161.AR.MDA-MB-453_R1881_SICTR 136 bp overlap
ChIP MDA-MB-453_R1881_SIPIAS1 GSE70161.AR.MDA-MB-453_R1881_SIPIAS1 136 bp overlap
ChIP PC-3_R1881 GSE54110.AR.PC-3_R1881 124 bp overlap
ChIP VCaP_DHAT_18H GSE28950.AR.VCaP_DHAT_18H 91 bp overlap
ChIP VCaP_DHAT_2H GSE28950.AR.VCaP_DHAT_2H 136 bp overlap
ChIP VCaP_R1881 GSE32892.AR.VCaP_R1881 136 bp overlap
ChIP VCaP_R1881_30M GSE84432.AR.VCaP_R1881_30M 129 bp overlap
ChIP VCaP_R1881_4H GSE84432.AR.VCaP_R1881_4H 93 bp overlap
ChIP VCaP_shERG GSE110655.AR.VCaP_shERG 106 bp overlap
ChIP breast-cancer_ENOB-2854 GSE128018.AR.breast-cancer_ENOB-2854 136 bp overlap
ChIP prostate-cancer_C4-2-CON GSE136128.AR.prostate-cancer_C4-2-CON 85 bp overlap
ChIP prostate-cancer_PDX_58 GSE130408.AR.prostate-cancer_PDX_58 74 bp overlap
ChIP prostate-cancer_PDX_70 GSE130408.AR.prostate-cancer_PDX_70 136 bp overlap
ChIP prostate-cancer_PDX_92 GSE130408.AR.prostate-cancer_PDX_92 64 bp overlap
ChIP prostate_DHT GSE61838.AR.prostate_DHT 134 bp overlap
ATF2 1 dataset
Motif DE_12h DE_12h-ATF2_MA1632.2 10 bp overlap
BARX1 1 dataset
Motif DE_12h DE_12h-BARX1_MA0875.2 6 bp overlap
BSX 1 dataset
Motif DE_12h DE_12h-BSX_MA0876.2 6 bp overlap
DLX1 1 dataset
Motif DE_12h DE_12h-DLX1_MA0879.3 6 bp overlap
DLX6 1 dataset
Motif DE_12h DE_12h-DLX6_MA0882.2 6 bp overlap
Dlx2 1 dataset
Motif DE_12h DE_12h-Dlx2_MA0885.3 8 bp overlap
Dlx3 1 dataset
Motif DE_12h DE_12h-Dlx3_MA0880.2 6 bp overlap
Dlx4 1 dataset
Motif DE_12h DE_12h-Dlx4_MA0881.2 6 bp overlap
Dlx5 1 dataset
Motif DE_12h DE_12h-Dlx5_MA1476.3 8 bp overlap
ESR1 8 datasets
ChIP MCF-7_E2+4OHT_SRC-3 GSE119702.ESR1.MCF-7_E2+4OHT_SRC-3 136 bp overlap
ChIP MCF-7_SIGATA_E2 GSE40129.ESR1.MCF-7_SIGATA_E2 126 bp overlap
ChIP MCF-7_SRC3_OHT GSE119702.ESR1.MCF-7_SRC3_OHT 136 bp overlap
ChIP MCF-7_TamR GSE128445.ESR1.MCF-7_TamR 136 bp overlap
ChIP ZR751 ERP000783.ESR1.ZR751 136 bp overlap
ChIP ZR751 GSE72249.ESR1.ZR751 136 bp overlap
ChIP ZR751_E2 GSE72249.ESR1.ZR751_E2 136 bp overlap
ChIP breast_tumor_BADOUTCOME GSE40867.ESR1.breast_tumor_BADOUTCOME 118 bp overlap
EZH2 1 dataset
ChIP SU-DHL-5 GSE45982.EZH2.SU-DHL-5 77 bp overlap
FOS::JUN 1 dataset
Motif DE_12h DE_12h-FOSJUN_MA1126.2 10 bp overlap
FOSL2::JUND 1 dataset
Motif DE_12h DE_12h-FOSL2JUND_MA1145.2 10 bp overlap
FOXA1 41 datasets
ChIP 22Rv1 GSE96652.FOXA1.22Rv1 136 bp overlap
ChIP 22Rv1 GSE85558.FOXA1.22Rv1 136 bp overlap
ChIP 22Rv1_CST GSE129951.FOXA1.22Rv1_CST 136 bp overlap
ChIP 22Rv1_CST GSE123618.FOXA1.22Rv1_CST 136 bp overlap
ChIP 22Rv1_CST_Crispr GSE123618.FOXA1.22Rv1_CST_Crispr 136 bp overlap
ChIP 22Rv1_CST_Crispr-36 GSE123618.FOXA1.22Rv1_CST_Crispr-36 109 bp overlap
ChIP 22Rv1_CST_Crispr-70 GSE123618.FOXA1.22Rv1_CST_Crispr-70 136 bp overlap
ChIP 22Rv1_CST_Crispr_WT3 GSE123618.FOXA1.22Rv1_CST_Crispr_WT3 136 bp overlap
ChIP 22Rv1_Dox GSE85558.FOXA1.22Rv1_Dox 136 bp overlap
ChIP 22Rv1_EtOH GSE80742.FOXA1.22Rv1_EtOH 136 bp overlap
ChIP 22Rv1_R1881 GSE80742.FOXA1.22Rv1_R1881 136 bp overlap
ChIP 22Rv1_i176m_CST GSE123618.FOXA1.22Rv1_i176m_CST 136 bp overlap
ChIP 22Rv1_r261g_CST GSE123618.FOXA1.22Rv1_r261g_CST 136 bp overlap
ChIP LAPC-4_CST_DHT GSE123618.FOXA1.LAPC-4_CST_DHT 136 bp overlap
ChIP LNCaP_ETOH24H GSE58428.FOXA1.LNCaP_ETOH24H 136 bp overlap
ChIP LNCaP_L388M_shFOXA1 GSE128883.FOXA1.LNCaP_L388M_shFOXA1 124 bp overlap
ChIP LNCaP_R1881 GSE69043.FOXA1.LNCaP_R1881 105 bp overlap
ChIP LNCaP_S2101-48H GSE114266.FOXA1.LNCaP_S2101-48H 117 bp overlap
ChIP LNCaP_VEH GSE114266.FOXA1.LNCaP_VEH 136 bp overlap
ChIP MCF-7-TAMR-1_4OH-Tam GSE75201.FOXA1.MCF-7-TAMR-1_4OH-Tam 136 bp overlap
ChIP MCF-7_DOX-neg GSE124654.FOXA1.MCF-7_DOX-neg 127 bp overlap
ChIP MCF-7_E2 GSE60270.FOXA1.MCF-7_E2 134 bp overlap
ChIP MCF-7_TAMR_E2_TAM ERP000380.FOXA1.MCF-7_TAMR_E2_TAM 136 bp overlap
ChIP MCF-7_TNF GSE59530.FOXA1.MCF-7_TNF 75 bp overlap
ChIP NCI-H3122 GSE39998.FOXA1.NCI-H3122 107 bp overlap
ChIP T-47D_shRNF2 GSE137579.FOXA1.T-47D_shRNF2 136 bp overlap
ChIP T-47D_shRNF2_24h GSE137579.FOXA1.T-47D_shRNF2_24h 62 bp overlap
ChIP T-47D_shRNF2_8h GSE137579.FOXA1.T-47D_shRNF2_8h 136 bp overlap
ChIP VCaP_DHT24H GSE58428.FOXA1.VCaP_DHT24H 136 bp overlap
ChIP VCaP_ETOH24H GSE58428.FOXA1.VCaP_ETOH24H 136 bp overlap
ChIP ZR-75-1_estrogen_ab1 GSE112969.FOXA1.ZR-75-1_estrogen_ab1 136 bp overlap
ChIP ZR-75-1_estrogen_ab2 GSE112969.FOXA1.ZR-75-1_estrogen_ab2 136 bp overlap
ChIP ZR-75-1_vehicle_ab2 GSE112969.FOXA1.ZR-75-1_vehicle_ab2 136 bp overlap
ChIP ZR751 GSE72249.FOXA1.ZR751 136 bp overlap
ChIP ZR751_DEX GSE72249.FOXA1.ZR751_DEX 136 bp overlap
ChIP ZR751_E2 GSE72249.FOXA1.ZR751_E2 136 bp overlap
ChIP ZR751_E2_TAM ERP000380.FOXA1.ZR751_E2_TAM 136 bp overlap
ChIP breast-cancer_ENOB-2849 GSE128018.FOXA1.breast-cancer_ENOB-2849 136 bp overlap
ChIP breast-cancer_ENOB-2852 GSE128018.FOXA1.breast-cancer_ENOB-2852 136 bp overlap
ChIP breast-cancer_Veh-2856 GSE128018.FOXA1.breast-cancer_Veh-2856 136 bp overlap
ChIP prostate-cancer_PDX_136 GSE130408.FOXA1.prostate-cancer_PDX_136 94 bp overlap
FOXA2 1 dataset
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA2.pancreatic-progenitor_PP1 79 bp overlap
GATA3 1 dataset
ChIP Kelly GSE94822.GATA3.Kelly 90 bp overlap
GBX2 1 dataset
Motif DE_12h DE_12h-GBX2_MA0890.2 6 bp overlap
HESX1 1 dataset
Motif DE_12h DE_12h-HESX1_MA0894.2 6 bp overlap
HNF4G 2 datasets
ChIP 22Rv1 GSE85558.HNF4G.22Rv1 136 bp overlap
ChIP 22Rv1_Dox GSE85558.HNF4G.22Rv1_Dox 125 bp overlap
HOXA6 1 dataset
Motif DE_12h DE_12h-HOXA6_MA1497.2 7 bp overlap
HOXA7 1 dataset
Motif DE_12h DE_12h-HOXA7_MA1498.3 6 bp overlap
HOXB13 6 datasets
ChIP 22Rv1 GSE96652.HOXB13.22Rv1 136 bp overlap
ChIP prostate-cancer_PDX_70 GSE130408.HOXB13.prostate-cancer_PDX_70 121 bp overlap
ChIP prostate-cancer_PDX_92 GSE130408.HOXB13.prostate-cancer_PDX_92 102 bp overlap
ChIP prostate_P1_T GSE130408.HOXB13.prostate_P1_T 136 bp overlap
ChIP prostate_P23_T GSE130408.HOXB13.prostate_P23_T 136 bp overlap
ChIP prostate_P5_T GSE130408.HOXB13.prostate_P5_T 60 bp overlap
HOXB6 1 dataset
Motif DE_12h DE_12h-HOXB6_MA1500.2 7 bp overlap
HOXB7 1 dataset
Motif DE_12h DE_12h-HOXB7_MA1501.2 7 bp overlap
HOXB8 1 dataset
Motif DE_12h DE_12h-HOXB8_MA1502.2 7 bp overlap
HOXC6 1 dataset
ChIP 22Rv1 GSE129951.HOXC6.22Rv1 136 bp overlap
HOXD3 1 dataset
Motif DE_12h DE_12h-HOXD3_MA0912.2 8 bp overlap
HOXD8 1 dataset
Motif DE_12h DE_12h-HOXD8_MA0910.3 7 bp overlap
Hmx1 1 dataset
Motif DE_12h DE_12h-Hmx1_MA0896.2 9 bp overlap
Hmx3 1 dataset
Motif DE_12h DE_12h-Hmx3_MA0898.2 9 bp overlap
JUN 1 dataset
Motif DE_12h DE_12h-JUN_MA0488.2 10 bp overlap
LBX2 1 dataset
Motif DE_12h DE_12h-LBX2_MA0699.2 6 bp overlap
LHX2 1 dataset
Motif DE_12h DE_12h-LHX2_MA0700.3 6 bp overlap
MSX1 1 dataset
Motif DE_12h DE_12h-MSX1_MA0666.3 6 bp overlap
MSX2 1 dataset
Motif DE_12h DE_12h-MSX2_MA0708.3 6 bp overlap
Msx3 1 dataset
Motif DE_12h DE_12h-Msx3_MA0709.2 6 bp overlap
NANOG 2 datasets
ChIP LNCaP_pNanog1_Dox GSE74799.NANOG.LNCaP_pNanog1_Dox 136 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 136 bp overlap
NKX3-1 1 dataset
ChIP islet ERP004003.NKX3-1.islet 136 bp overlap
NR3C1 2 datasets
ChIP MDA-MB-453 GSE152203.NR3C1.MDA-MB-453 136 bp overlap
ChIP ZR751_DEX GSE72249.NR3C1.ZR751_DEX 136 bp overlap
Nobox 1 dataset
Motif DE_12h DE_12h-Nobox_MA0125.2 6 bp overlap
PDX1 1 dataset
ChIP islet ERP001456.PDX1.islet 136 bp overlap
POU2F1 1 dataset
ChIP 22Rv1_DHT GSE123565.POU2F1.22Rv1_DHT 136 bp overlap
RAD21 1 dataset
ChIP HAP1 GSE152721.RAD21.HAP1 52 bp overlap
RAX 1 dataset
Motif DE_12h DE_12h-RAX_MA0718.2 6 bp overlap
SNAI2 1 dataset
ChIP SMS-CTR_shSNAI2 GSE137168.SNAI2.SMS-CTR_shSNAI2 121 bp overlap
SREBF1 1 dataset
Motif DE_12h DE_12h-SREBF1_MA0595.1 10 bp overlap
SREBF2 1 dataset
Motif DE_12h DE_12h-SREBF2_MA0596.1 10 bp overlap
STAT3 1 dataset
ChIP MDA-MB-453 GSE152203.STAT3.MDA-MB-453 136 bp overlap
Spz1 1 dataset
Motif DE_12h DE_12h-Spz1_MA0111.1 11 bp overlap
TBX18 1 dataset
Motif DE_12h DE_12h-TBX18_MA1565.2 9 bp overlap
TBX2 1 dataset
ChIP Kelly GSE94822.TBX2.Kelly 136 bp overlap
TBX20 1 dataset
Motif DE_12h DE_12h-TBX20_MA0689.1 11 bp overlap
TBX5 1 dataset
Motif DE_12h DE_12h-TBX5_MA0807.1 8 bp overlap
TFAP2A 2 datasets
Motif DE_12h DE_12h-TFAP2A_MA0003.5 9 bp overlap
ChIP MCF-7_E2 GSE60270.TFAP2A.MCF-7_E2 136 bp overlap
TFAP2B 2 datasets
Motif DE_12h DE_12h-TFAP2B_MA0811.2 11 bp overlap
Motif DE_12h DE_12h-TFAP2B_MA0812.2 9 bp overlap
TFAP2C 2 datasets
Motif DE_12h DE_12h-TFAP2C_MA0524.3 11 bp overlap
Motif DE_12h DE_12h-TFAP2C_MA0814.3 9 bp overlap
TFAP2E 1 dataset
Motif DE_12h DE_12h-TFAP2E_MA1569.2 9 bp overlap
VENTX 1 dataset
Motif DE_12h DE_12h-VENTX_MA0724.1 9 bp overlap
ZKSCAN5 1 dataset
Motif DE_12h DE_12h-ZKSCAN5_MA1652.2 9 bp overlap
ZNF652 1 dataset
Motif DE_12h DE_12h-ZNF652_MA1657.2 9 bp overlap
ZNF76 1 dataset
Motif DE_12h DE_12h-ZNF76_MA1716.2 17 bp overlap
Znf423 1 dataset
Motif DE_12h DE_12h-Znf423_MA0116.1 15 bp overlap
Huangfu Lab · Publications · Resources · Contact