chr5 : 51,278,576 51,279,019
443 bp 53 TFs 0 linked genes
This 443 bp open chromatin element has no linked target genes and is bound by 53 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr5:51,273,576 – 51,284,019
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
53 transcription factors
Source
Cell type
AR 2 datasets
ChIP LNCaP-clone-FGC_DHT-DMSO GSE118247.AR.LNCaP-clone-FGC_DHT-DMSO 78 bp overlap
ChIP LNCaP_sgCtrl GSE117430.AR.LNCaP_sgCtrl 63 bp overlap
ARID2 2 datasets
ChIP BIN-67_ctrl GSE117734.ARID2.BIN-67_ctrl 443 bp overlap
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.ARID2.BIN-67_lentivirus-SMARCA4 421 bp overlap
ARNTL 2 datasets
ChIP U2OS GSE130602.ARNTL.U2OS 192 bp overlap
ChIP U2OS_DMSO GSE130506.ARNTL.U2OS_DMSO 192 bp overlap
ATRX 1 dataset
ChIP metastatic-neuroblastoma_CHLA90 GSE100148.ATRX.metastatic-neuroblastoma_CHLA90 163 bp overlap
BNC2 1 dataset
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR754GYI.BNC2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 142 bp overlap
BRD2 1 dataset
ChIP HUVEC-C GSE60171.BRD2.HUVEC-C 147 bp overlap
BRD4 1 dataset
ChIP cortical-interneuron_R133C_KCl-pos_JQ1-pos GSE117508.BRD4.cortical-interneuron_R133C_KCl-pos_JQ1-pos 228 bp overlap
CHD1 1 dataset
ChIP LNCaP_DHT GSE64528.CHD1.LNCaP_DHT 303 bp overlap
CHD7 1 dataset
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 421 bp overlap
CREB1 2 datasets
ChIP GM23338 ENCFF432ZEW 305 bp overlap
ChIP GM23338 ENCSR214ZAV.CREB1.GM23338 227 bp overlap
CREB5 1 dataset
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR758GOA.CREB5.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 155 bp overlap
CRY2 1 dataset
ChIP U2OS GSE130602.CRY2.U2OS 298 bp overlap
CSDC2 1 dataset
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR474KBG.CSDC2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 443 bp overlap
DPF2 3 datasets
ChIP BIN-67 GSE117734.DPF2.BIN-67 392 bp overlap
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.DPF2.BIN-67_lentivirus-SMARCA4 379 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.DPF2.BIN-67_lentivirus-SMARCA4-K785R 329 bp overlap
EHF 1 dataset
Motif ES_0h ES_0h-EHF_MA0598.4 9 bp overlap
ELF3 1 dataset
Motif ES_0h ES_0h-ELF3_MA0640.3 9 bp overlap
ESRRG 2 datasets
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR023KKB.ESRRG.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 124 bp overlap
ChIP cardiomyocyte GSE113760.ESRRG.cardiomyocyte 336 bp overlap
ETV7 1 dataset
Motif ES_0h ES_0h-ETV7_MA1708.2 9 bp overlap
FOXA2 1 dataset
ChIP DE DE-FOXA2-1 128 bp overlap
GATA3 1 dataset
ChIP SK-N-SH ENCFF040SSB 211 bp overlap
GATA4 2 datasets
ChIP G296S GSE85628.GATA4.G296S 135 bp overlap
ChIP G296S_2 GSE85628.GATA4.G296S_2 135 bp overlap
GLIS3 2 datasets
ChIP SK-N-SH ENCFF370MHZ 205 bp overlap
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR507BWM.GLIS3.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 158 bp overlap
HAND2 2 datasets
ChIP CLB-Ga GSE90683.HAND2.CLB-Ga 175 bp overlap
ChIP SK-N-BE2-C GSE94822.HAND2.SK-N-BE2-C 117 bp overlap
ISL1 1 dataset
ChIP SK-N-SH ENCFF285GEQ 231 bp overlap
KMT2C 2 datasets
ChIP BIN-67_ctrl GSE117734.KMT2C.BIN-67_ctrl 443 bp overlap
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.KMT2C.BIN-67_lentivirus-SMARCA4 377 bp overlap
KMT2D 2 datasets
ChIP BIN-67_ctrl GSE117734.KMT2D.BIN-67_ctrl 398 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.KMT2D.BIN-67_lentivirus-SMARCA4-T910M 443 bp overlap
MYCN 1 dataset
ChIP LA-N-5 GSE138295.MYCN.LA-N-5 223 bp overlap
NANOG 7 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 399 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 399 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 443 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 345 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 217 bp overlap
ChIP hESC GSE20650.NANOG.hESC 249 bp overlap
ChIP hESC GSE18292.NANOG.hESC 166 bp overlap
NCOA3 1 dataset
ChIP MCF-7_E2 ERP000901.NCOA3.MCF-7_E2 208 bp overlap
NFIC 1 dataset
ChIP SK-N-SH ENCSR000BSV.NFIC.SK-N-SH 108 bp overlap
NIPBL 2 datasets
ChIP hESC_WNT3A_ACTIVIN GSE64758.NIPBL.hESC_WNT3A_ACTIVIN 230 bp overlap
ChIP hESC_activin GSE64758.NIPBL.hESC_activin 211 bp overlap
NRIP1 1 dataset
ChIP MCF-7_E2 ERP005838.NRIP1.MCF-7_E2 166 bp overlap
OSR2 1 dataset
Motif ES_0h ES_0h-OSR2_MA1646.2 8 bp overlap
POU5F1 5 datasets
ChIP BJ_INDUCED GSE36570.POU5F1.BJ_INDUCED 115 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 380 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 162 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 104 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 153 bp overlap
RUVBL2 1 dataset
ChIP U2OS GSE130602.RUVBL2.U2OS 404 bp overlap
SMARCA4 6 datasets
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4 261 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4-K785R 311 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4-T910M 443 bp overlap
ChIP NPC_siCT GSE122631.SMARCA4.NPC_siCT 414 bp overlap
ChIP NPC_siSOX GSE122631.SMARCA4.NPC_siSOX 383 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 410 bp overlap
SMARCC1 5 datasets
ChIP BIN-67 GSE117734.SMARCC1.BIN-67 239 bp overlap
ChIP BIN-67_ctrl GSE117734.SMARCC1.BIN-67_ctrl 414 bp overlap
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.SMARCC1.BIN-67_lentivirus-SMARCA4 407 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.SMARCC1.BIN-67_lentivirus-SMARCA4-T910M 443 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 237 bp overlap
SOX2 3 datasets
ChIP HNSC GSE69479.SOX2.HNSC 438 bp overlap
ChIP hESC GSE18292.SOX2.hESC 120 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 289 bp overlap
SPIB 1 dataset
Motif ES_0h ES_0h-SPIB_MA0081.3 13 bp overlap
SS18 3 datasets
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.SS18.BIN-67_lentivirus-SMARCA4 443 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.SS18.BIN-67_lentivirus-SMARCA4-K785R 327 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.SS18.BIN-67_lentivirus-SMARCA4-T910M 443 bp overlap
Spi1 1 dataset
Motif ES_0h ES_0h-Spi1_MA0080.7 13 bp overlap
TBP 1 dataset
ChIP hESC GSE122298.TBP.hESC 192 bp overlap
TBX5 4 datasets
ChIP G296S GSE85628.TBX5.G296S 190 bp overlap
ChIP G296S_2 GSE85628.TBX5.G296S_2 190 bp overlap
ChIP cardiomyocyte_7 GSE85628.TBX5.cardiomyocyte_7 256 bp overlap
ChIP hiPSC GSE81585.TBX5.hiPSC 171 bp overlap
TCF4 1 dataset
ChIP SK-N-SH ENCFF270OWF 250 bp overlap
THRB 1 dataset
Motif ES_0h ES_0h-THRB_MA1576.2 18 bp overlap
TSHZ2 1 dataset
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR282NLQ.TSHZ2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 175 bp overlap
ZFP3 1 dataset
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR581GUY.ZFP3.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 270 bp overlap
ZNF317 1 dataset
Motif ES_0h ES_0h-ZNF317_MA1593.2 8 bp overlap
ZNF462 2 datasets
ChIP GM23338 ENCFF896CCA 251 bp overlap
ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 410 bp overlap