chr5 : 51,060,931 – 51,061,350
419 bp 61 TFs 0 linked genes
This 419 bp open chromatin element has no linked target genes and is bound by 61 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr5:51,055,931 – 51,066,350
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
61 transcription factors
Source
Cell type
AR 1 dataset
ChIP LNCaP-clone-FGC_DHT-DMSO GSE118247.AR.LNCaP-clone-FGC_DHT-DMSO 151 bp overlap
ATF4 2 datasets
Motif DE_36h DE_36h-ATF4_MA0833.3 10 bp overlap
Motif DE_48h DE_48h-ATF4_MA0833.3 10 bp overlap
ATRX 1 dataset
ChIP metastatic-neuroblastoma_SKNFI GSE100148.ATRX.metastatic-neuroblastoma_SKNFI 111 bp overlap
BCL6 1 dataset
ChIP OCI-Ly1_UV GSE103125.BCL6.OCI-Ly1_UV 65 bp overlap
Bcl11B 2 datasets
Motif DE_36h DE_36h-Bcl11B_MA1989.2 9 bp overlap
Motif DE_48h DE_48h-Bcl11B_MA1989.2 9 bp overlap
CEBPG 2 datasets
Motif DE_36h DE_36h-CEBPG_MA1636.2 10 bp overlap
Motif DE_48h DE_48h-CEBPG_MA1636.2 10 bp overlap
DUX4 2 datasets
Motif DE_36h DE_36h-DUX4_MA0468.1 11 bp overlap
Motif DE_48h DE_48h-DUX4_MA0468.1 11 bp overlap
DUXA 2 datasets
Motif DE_36h DE_36h-DUXA_MA0884.2 13 bp overlap
Motif DE_48h DE_48h-DUXA_MA0884.2 13 bp overlap
Dux 2 datasets
Motif DE_36h DE_36h-Dux_MA0611.3 11 bp overlap
Motif DE_48h DE_48h-Dux_MA0611.3 11 bp overlap
ELF4 1 dataset
ChIP K562 ENCFF454SBL 50 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 210 bp overlap
ERF::FOXO1 1 dataset
Motif DE_36h DE_36h-ERFFOXO1_MA1936.2 12 bp overlap
ERF::NHLH1 2 datasets
Motif DE_36h DE_36h-ERFNHLH1_MA1938.2 16 bp overlap
Motif DE_48h DE_48h-ERFNHLH1_MA1938.2 16 bp overlap
ETV5::FOXO1 2 datasets
Motif DE_36h DE_36h-ETV5FOXO1_MA1947.2 10 bp overlap
Motif DE_48h DE_48h-ETV5FOXO1_MA1947.2 10 bp overlap
EWSR1-FLI1 1 dataset
Motif DE_36h DE_36h-EWSR1-FLI1_MA0149.1 18 bp overlap
FOXA1 3 datasets
ChIP 22Rv1_TFS GSE123618.FOXA1.22Rv1_TFS 151 bp overlap
ChIP LNCaP-abl GSE63034.FOXA1.LNCaP-abl 98 bp overlap
ChIP LNCaP_FENG_shFOXA1_Ethanol GSE128883.FOXA1.LNCaP_FENG_shFOXA1_Ethanol 75 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 419 bp overlap
ChIP DE DE-FOXA2-2 388 bp overlap
FOXO1::ELF1 1 dataset
Motif DE_36h DE_36h-FOXO1ELF1_MA1953.2 13 bp overlap
GATA2 3 datasets
ChIP LNCaP GSE38391.GATA2.LNCaP 89 bp overlap
ChIP LNCaP GSE52725.GATA2.LNCaP 89 bp overlap
ChIP VCaP GSE125236.GATA2.VCaP 68 bp overlap
GATA3 3 datasets
ChIP MCF-7 GSE122847.GATA3.MCF-7 102 bp overlap
ChIP MCF-7_E2 GSE40129.GATA3.MCF-7_E2 56 bp overlap
ChIP MCF-7_sgScr GSE133072.GATA3.MCF-7_sgScr 88 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 412 bp overlap
ChIP DE DE-GATA4-2 419 bp overlap
GATA6 8 datasets
ChIP DE DE-GATA6-1 392 bp overlap
ChIP DE DE-GATA6-2 419 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 295 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 289 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 408 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 281 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 301 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 311 bp overlap
HOXB13 3 datasets
ChIP LNCaP GSE56288.HOXB13.LNCaP 64 bp overlap
ChIP prostate_P27_T GSE130408.HOXB13.prostate_P27_T 92 bp overlap
ChIP prostate_P29_T GSE130408.HOXB13.prostate_P29_T 245 bp overlap
Hnf1A 1 dataset
Motif DE_36h DE_36h-Hnf1A_MA1991.2 10 bp overlap
IRF2 1 dataset
Motif DE_36h DE_36h-IRF2_MA0051.2 16 bp overlap
Irf1 1 dataset
Motif DE_36h DE_36h-Irf1_MA0050.4 11 bp overlap
JUN 2 datasets
Motif DE_36h DE_36h-JUN_MA0488.2 10 bp overlap
Motif DE_48h DE_48h-JUN_MA0488.2 10 bp overlap
KLF1 2 datasets
Motif DE_36h DE_36h-KLF1_MA0493.3 8 bp overlap
Motif DE_48h DE_48h-KLF1_MA0493.3 8 bp overlap
KLF11 2 datasets
Motif DE_36h DE_36h-KLF11_MA1512.2 10 bp overlap
Motif DE_48h DE_48h-KLF11_MA1512.2 10 bp overlap
KLF16 2 datasets
Motif DE_36h DE_36h-KLF16_MA0741.1 11 bp overlap
Motif DE_48h DE_48h-KLF16_MA0741.1 11 bp overlap
KLF2 2 datasets
Motif DE_36h DE_36h-KLF2_MA1515.2 8 bp overlap
Motif DE_48h DE_48h-KLF2_MA1515.2 8 bp overlap
KLF3 2 datasets
Motif DE_36h DE_36h-KLF3_MA1516.2 10 bp overlap
Motif DE_48h DE_48h-KLF3_MA1516.2 10 bp overlap
KLF4 2 datasets
Motif DE_36h DE_36h-KLF4_MA0039.5 8 bp overlap
Motif DE_48h DE_48h-KLF4_MA0039.5 8 bp overlap
KLF6 2 datasets
Motif DE_36h DE_36h-KLF6_MA1517.2 9 bp overlap
Motif DE_48h DE_48h-KLF6_MA1517.2 9 bp overlap
KLF9 2 datasets
Motif DE_36h DE_36h-KLF9_MA1107.3 11 bp overlap
Motif DE_48h DE_48h-KLF9_MA1107.3 11 bp overlap
Lef1 1 dataset
Motif DE_36h DE_36h-Lef1_MA0768.3 8 bp overlap
MYCN 2 datasets
ChIP LNCaP_DHT GSE117304.MYCN.LNCaP_DHT 99 bp overlap
ChIP LNCaP_EtOH GSE117304.MYCN.LNCaP_EtOH 137 bp overlap
NFYA 2 datasets
Motif DE_36h DE_36h-NFYA_MA0060.4 8 bp overlap
Motif DE_48h DE_48h-NFYA_MA0060.4 8 bp overlap
NFYC 2 datasets
Motif DE_36h DE_36h-NFYC_MA1644.2 7 bp overlap
Motif DE_48h DE_48h-NFYC_MA1644.2 7 bp overlap
Nfatc2 1 dataset
Motif DE_36h DE_36h-Nfatc2_MA0152.3 8 bp overlap
RARA 2 datasets
Motif DE_36h DE_36h-RARA_MA0729.1 18 bp overlap
Motif DE_48h DE_48h-RARA_MA0729.1 18 bp overlap
RUNX2 2 datasets
Motif DE_36h DE_36h-RUNX2_MA0511.2 9 bp overlap
Motif DE_48h DE_48h-RUNX2_MA0511.2 9 bp overlap
Runx1 2 datasets
Motif DE_36h DE_36h-Runx1_MA0002.3 9 bp overlap
Motif DE_48h DE_48h-Runx1_MA0002.3 9 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 419 bp overlap
SMAD2_3 2 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 301 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 245 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 243 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 329 bp overlap
SP3 2 datasets
Motif DE_36h DE_36h-SP3_MA0746.3 11 bp overlap
Motif DE_48h DE_48h-SP3_MA0746.3 11 bp overlap
SP5 1 dataset
Motif DE_36h DE_36h-SP5_MA1965.2 6 bp overlap
TLE3 2 datasets
ChIP LNCaP GSE94682.TLE3.LNCaP 103 bp overlap
ChIP LNCaP_r1881 GSE94682.TLE3.LNCaP_r1881 97 bp overlap
VEZF1 2 datasets
Motif DE_36h DE_36h-VEZF1_MA1578.2 6 bp overlap
Motif DE_48h DE_48h-VEZF1_MA1578.2 6 bp overlap
Yy1 1 dataset
Motif DE_36h DE_36h-Yy1_MA0095.4 8 bp overlap
ZBTB40 1 dataset
ChIP GM12878 ENCFF346DYM 120 bp overlap
ZKSCAN5 2 datasets
Motif DE_36h DE_36h-ZKSCAN5_MA1652.2 9 bp overlap
Motif DE_48h DE_48h-ZKSCAN5_MA1652.2 9 bp overlap
ZNF143 2 datasets
Motif DE_36h DE_36h-ZNF143_MA0088.2 16 bp overlap
Motif DE_48h DE_48h-ZNF143_MA0088.2 16 bp overlap
ZNF766 2 datasets
Motif DE_36h DE_36h-ZNF766_MA2098.1 9 bp overlap
Motif DE_48h DE_48h-ZNF766_MA2098.1 9 bp overlap
ZSCAN21 1 dataset
Motif DE_36h DE_36h-ZSCAN21_MA2336.1 7 bp overlap
ZSCAN5C 1 dataset
ChIP HEK293 ENCSR731AGO.ZSCAN5C.HEK293 84 bp overlap
Zfp335 2 datasets
Motif DE_36h DE_36h-Zfp335_MA2002.2 7 bp overlap
Motif DE_48h DE_48h-Zfp335_MA2002.2 7 bp overlap
Zic1::Zic2 2 datasets
Motif DE_36h DE_36h-Zic1Zic2_MA1628.2 7 bp overlap
Motif DE_48h DE_48h-Zic1Zic2_MA1628.2 7 bp overlap
Zic3 2 datasets
Motif DE_36h DE_36h-Zic3_MA0697.3 7 bp overlap
Motif DE_48h DE_48h-Zic3_MA0697.3 7 bp overlap
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