chr5 : 4,198,228 4,198,928
700 bp 71 TFs 0 linked genes
This 700 bp open chromatin element has no linked target genes and is bound by 71 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr5:4,193,228 – 4,203,928
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
71 transcription factors
Source
Cell type
AR 1 dataset
ChIP breast_tumor_Male_10 GSE104399.AR.breast_tumor_Male_10 58 bp overlap
BARX1 1 dataset
Motif DE_60h DE_60h-BARX1_MA0875.2 6 bp overlap
BARX2 1 dataset
Motif DE_60h DE_60h-BARX2_MA1471.2 9 bp overlap
BRD4 1 dataset
ChIP Kelly_sensitive GSE103030.BRD4.Kelly_sensitive 410 bp overlap
BSX 1 dataset
Motif DE_60h DE_60h-BSX_MA0876.2 6 bp overlap
CHD4 2 datasets
ChIP 501-mel GSE134848.CHD4.501-mel 427 bp overlap
ChIP 501-mel GSE134848.CHD4.501-mel 173 bp overlap
CTCF 36 datasets
ChIP Hep-G2 ENCSR000BIE.CTCF.Hep-G2 134 bp overlap
ChIP Hep-G2 ENCSR000DLS.CTCF.Hep-G2 94 bp overlap
ChIP HepG2 ENCFF348BUL 197 bp overlap
ChIP HepG2 ENCFF757EKU 351 bp overlap
ChIP MCF-10AT1 GSE98551.CTCF.MCF-10AT1 390 bp overlap
ChIP MCF-10CA1a GSE98551.CTCF.MCF-10CA1a 334 bp overlap
ChIP MCF-7 ENCFF162GNE 245 bp overlap
ChIP MCF-7 ENCFF198DQX 113 bp overlap
ChIP MCF-7 ENCFF210JUZ 421 bp overlap
ChIP MCF-7 ENCFF414SZG 191 bp overlap
ChIP MCF-7 ENCFF494VXA 113 bp overlap
ChIP MCF-7 ENCSR560BUE.CTCF.MCF-7 473 bp overlap
ChIP MCF-7 ENCSR000DMR.CTCF.MCF-7 226 bp overlap
ChIP MCF-7 GSE137216.CTCF.MCF-7 271 bp overlap
ChIP MCF-7 ENCSR000DMS.CTCF.MCF-7 172 bp overlap
ChIP MCF-7 ENCSR000AHD.CTCF.MCF-7 208 bp overlap
ChIP MCF-7 ERP000380.CTCF.MCF-7 115 bp overlap
ChIP MCF-7 ENCSR000DWH.CTCF.MCF-7 167 bp overlap
ChIP MCF-7 GSE70764.CTCF.MCF-7 113 bp overlap
ChIP MCF-7L_TAMR GSE108787.CTCF.MCF-7L_TAMR 195 bp overlap
ChIP MCF-7L_t0 GSE108787.CTCF.MCF-7L_t0 321 bp overlap
ChIP MCF-7L_t1 GSE108787.CTCF.MCF-7L_t1 293 bp overlap
ChIP MCF-7L_t24 GSE108787.CTCF.MCF-7L_t24 313 bp overlap
ChIP MCF-7_E2 ERP000380.CTCF.MCF-7_E2 119 bp overlap
ChIP MCF-7_E2_SHCTCF ERP000209.CTCF.MCF-7_E2_SHCTCF 157 bp overlap
ChIP MCF-7_TAM ERP000380.CTCF.MCF-7_TAM 171 bp overlap
ChIP MCF-7_TAM ERP000783.CTCF.MCF-7_TAM 152 bp overlap
ChIP MCF-7_tamoxifen-resistant GSE118711.CTCF.MCF-7_tamoxifen-resistant 222 bp overlap
ChIP RH4 GSE83726.CTCF.RH4 326 bp overlap
ChIP glioblastoma_GBM3565 GSE139416.CTCF.glioblastoma_GBM3565 254 bp overlap
ChIP hESC_NAIVE GSE69646.CTCF.hESC_NAIVE 319 bp overlap
ChIP primary-glioblastoma_G583 GSE121601.CTCF.primary-glioblastoma_G583 257 bp overlap
ChIP thyroid gland ENCFF163TUI 477 bp overlap
ChIP thyroid gland ENCFF204HWS 211 bp overlap
ChIP thyroid-gland ENCSR145HBC.CTCF.thyroid-gland 369 bp overlap
ChIP thyroid-gland ENCSR955BIB.CTCF.thyroid-gland 330 bp overlap
DLX1 1 dataset
Motif DE_60h DE_60h-DLX1_MA0879.3 6 bp overlap
DLX6 1 dataset
Motif DE_60h DE_60h-DLX6_MA0882.2 6 bp overlap
Dlx3 1 dataset
Motif DE_60h DE_60h-Dlx3_MA0880.2 6 bp overlap
Dlx4 1 dataset
Motif DE_60h DE_60h-Dlx4_MA0881.2 6 bp overlap
ESR1 10 datasets
ChIP MCF-7 GSE119057.ESR1.MCF-7 309 bp overlap
ChIP MCF-7_ER_t10 GSE119057.ESR1.MCF-7_ER_t10 321 bp overlap
ChIP MCF-7_ER_t20 GSE119057.ESR1.MCF-7_ER_t20 327 bp overlap
ChIP MCF-7_ER_t30 GSE119057.ESR1.MCF-7_ER_t30 327 bp overlap
ChIP MCF-7_ER_t40 GSE119057.ESR1.MCF-7_ER_t40 333 bp overlap
ChIP MCF-7_ER_t50 GSE119057.ESR1.MCF-7_ER_t50 301 bp overlap
ChIP MCF-7_ER_t60 GSE119057.ESR1.MCF-7_ER_t60 367 bp overlap
ChIP MCF-7_ER_t70 GSE119057.ESR1.MCF-7_ER_t70 324 bp overlap
ChIP MCF-7_ER_t80 GSE119057.ESR1.MCF-7_ER_t80 325 bp overlap
ChIP MCF-7_ER_t90 GSE119057.ESR1.MCF-7_ER_t90 323 bp overlap
EZH2 2 datasets
ChIP LNCaP GSE39459.EZH2.LNCaP 351 bp overlap
ChIP PC-9 ENCSR793USK.EZH2.PC-9 173 bp overlap
FOXA1 11 datasets
ChIP MCF-7 GSE59530.FOXA1.MCF-7 228 bp overlap
ChIP MCF-7 ERP000380.FOXA1.MCF-7 136 bp overlap
ChIP MCF-7 ERP001226.FOXA1.MCF-7 227 bp overlap
ChIP MCF-7 GSE81714.FOXA1.MCF-7 196 bp overlap
ChIP MCF-7_4OH-Tam GSE75201.FOXA1.MCF-7_4OH-Tam 142 bp overlap
ChIP MCF-7_E2 GSE23852.FOXA1.MCF-7_E2 166 bp overlap
ChIP MCF-7_E2_TNF GSE59530.FOXA1.MCF-7_E2_TNF 142 bp overlap
ChIP MCF-7_JC4693 GSE126004.FOXA1.MCF-7_JC4693 225 bp overlap
ChIP MCF-7_JC4694 GSE126004.FOXA1.MCF-7_JC4694 204 bp overlap
ChIP MCF-7_TNF GSE59530.FOXA1.MCF-7_TNF 179 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA1.pancreatic-progenitor_PP1 403 bp overlap
FOXA2 3 datasets
ChIP DE DE-FOXA2-1 532 bp overlap
ChIP DE DE-FOXA2-2 513 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA2.pancreatic-progenitor_PP1 465 bp overlap
FOXN3 1 dataset
Motif DE_60h DE_60h-FOXN3_MA1489.1 8 bp overlap
GATA3 9 datasets
ChIP CLB-Ga GSE90683.GATA3.CLB-Ga 320 bp overlap
ChIP Kelly GSE65664.GATA3.Kelly 238 bp overlap
ChIP Kelly GSE94822.GATA3.Kelly 245 bp overlap
ChIP MCF-7 ENCFF352QVM 481 bp overlap
ChIP MCF-7 ENCFF437NQS 371 bp overlap
ChIP MCF-7 GSE133072.GATA3.MCF-7 297 bp overlap
ChIP MCF-7 GSE51274.GATA3.MCF-7 226 bp overlap
ChIP MCF-7 GSE122847.GATA3.MCF-7 243 bp overlap
ChIP MCF-7_sgScr GSE133072.GATA3.MCF-7_sgScr 244 bp overlap
GATA4 5 datasets
ChIP DE DE-GATA4-1 545 bp overlap
ChIP DE DE-GATA4-2 529 bp overlap
ChIP foregut GSE117136.GATA4.foregut 569 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 673 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 490 bp overlap
GATA6 7 datasets
ChIP DE DE-GATA6-1 505 bp overlap
ChIP DE DE-GATA6-2 552 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 302 bp overlap
ChIP foregut GSE117136.GATA6.foregut 499 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 543 bp overlap
ChIP pancreatic-progenitor_KO GSE117136.GATA6.pancreatic-progenitor_KO 480 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 397 bp overlap
GBX2 1 dataset
Motif DE_60h DE_60h-GBX2_MA0890.2 6 bp overlap
GRHL2 1 dataset
Motif DE_60h DE_60h-GRHL2_MA1105.3 8 bp overlap
HAND2 3 datasets
ChIP CLB-Ga GSE90683.HAND2.CLB-Ga 698 bp overlap
ChIP Kelly GSE94822.HAND2.Kelly 162 bp overlap
ChIP Kelly GSE94822.HAND2.Kelly 350 bp overlap
HDAC2 2 datasets
ChIP MCF-7 ENCSR000BTP.HDAC2.MCF-7 118 bp overlap
ChIP RH4_Entinostat-6H GSE116344.HDAC2.RH4_Entinostat-6H 227 bp overlap
HESX1 1 dataset
Motif DE_60h DE_60h-HESX1_MA0894.2 6 bp overlap
HNF1A 1 dataset
Motif DE_60h DE_60h-HNF1A_MA0046.3 13 bp overlap
HNF1B 2 datasets
Motif DE_60h DE_60h-HNF1B_MA0153.2 13 bp overlap
ChIP foregut GSE117136.HNF1B.foregut 344 bp overlap
HOXA7 1 dataset
Motif DE_60h DE_60h-HOXA7_MA1498.3 6 bp overlap
Hmx1 1 dataset
Motif DE_60h DE_60h-Hmx1_MA0896.2 9 bp overlap
Hmx2 1 dataset
Motif DE_60h DE_60h-Hmx2_MA0897.2 15 bp overlap
Hmx3 1 dataset
Motif DE_60h DE_60h-Hmx3_MA0898.2 9 bp overlap
ISL2 1 dataset
Motif DE_60h DE_60h-ISL2_MA0914.2 6 bp overlap
KDM1A 2 datasets
ChIP pancreatic-progenitor_PP1 GSE104840.KDM1A.pancreatic-progenitor_PP1 260 bp overlap
ChIP pancreatic-progenitor_PP2-KDM1A-inh GSE104840.KDM1A.pancreatic-progenitor_PP2-KDM1A-inh 313 bp overlap
LBX2 1 dataset
Motif DE_60h DE_60h-LBX2_MA0699.2 6 bp overlap
LHX2 1 dataset
Motif DE_60h DE_60h-LHX2_MA0700.3 6 bp overlap
MITF 4 datasets
ChIP 501-mel GSE137522.MITF.501-mel 123 bp overlap
ChIP 501-mel GSE61965.MITF.501-mel 55 bp overlap
ChIP 501-mel_20ng_K243R GSE137522.MITF.501-mel_20ng_K243R 155 bp overlap
ChIP 501-mel_K243Q GSE137522.MITF.501-mel_K243Q 101 bp overlap
MSX1 1 dataset
Motif DE_60h DE_60h-MSX1_MA0666.3 6 bp overlap
MSX2 1 dataset
Motif DE_60h DE_60h-MSX2_MA0708.3 6 bp overlap
MYCN 1 dataset
ChIP Kelly GSE94822.MYCN.Kelly 311 bp overlap
Msx3 1 dataset
Motif DE_60h DE_60h-Msx3_MA0709.2 6 bp overlap
NEUROD1 1 dataset
ChIP D283-Med_shNEUROD1-1579 GSE92582.NEUROD1.D283-Med_shNEUROD1-1579 261 bp overlap
NFKB1 1 dataset
ChIP L1236 GSE63736.NFKB1.L1236 109 bp overlap
NKX2-3 1 dataset
Motif DE_60h DE_60h-NKX2-3_MA0672.2 8 bp overlap
NKX2-4 1 dataset
Motif DE_60h DE_60h-NKX2-4_MA2003.2 8 bp overlap
NKX2-8 1 dataset
Motif DE_60h DE_60h-NKX2-8_MA0673.2 8 bp overlap
NRIP1 1 dataset
ChIP MCF-7_E2 ERP005838.NRIP1.MCF-7_E2 127 bp overlap
Nkx3-1 1 dataset
Motif DE_60h DE_60h-Nkx3-1_MA0124.3 7 bp overlap
Nkx3-2 1 dataset
Motif DE_60h DE_60h-Nkx3-2_MA0122.4 10 bp overlap
Nobox 1 dataset
Motif DE_60h DE_60h-Nobox_MA0125.2 6 bp overlap
PDX1 3 datasets
ChIP hESC GSE58685.PDX1.hESC 185 bp overlap
ChIP hiPSC GSE125768.PDX1.hiPSC 235 bp overlap
ChIP pancreatic-progenitor GSE117136.PDX1.pancreatic-progenitor 665 bp overlap
PHOX2B 1 dataset
ChIP CLB-Ga GSE90683.PHOX2B.CLB-Ga 485 bp overlap
POU5F1 4 datasets
ChIP HUES-8 GSE109524.POU5F1.HUES-8 118 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 145 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 197 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 97 bp overlap
RAD21 14 datasets
ChIP Hep-G2 ENCSR000EEG.RAD21.Hep-G2 134 bp overlap
ChIP Hep-G2 ENCSR054FKH.RAD21.Hep-G2 129 bp overlap
ChIP HepG2 ENCFF360ZSW 217 bp overlap
ChIP HepG2 ENCFF906QIS 225 bp overlap
ChIP MCF-7 ENCFF694KOM 337 bp overlap
ChIP MCF-7 ENCFF724VCQ 257 bp overlap
ChIP MCF-7 ENCSR703TNG.RAD21.MCF-7 235 bp overlap
ChIP MCF-7 ERP000209.RAD21.MCF-7 300 bp overlap
ChIP MCF-7 ENCSR000BTQ.RAD21.MCF-7 250 bp overlap
ChIP MCF-7 GSE72082.RAD21.MCF-7 267 bp overlap
ChIP MCF-7 GSE137216.RAD21.MCF-7 185 bp overlap
ChIP MCF-7_E2 ERP000209.RAD21.MCF-7_E2 193 bp overlap
ChIP MCF-7_E2_SHCTCF ERP000209.RAD21.MCF-7_E2_SHCTCF 199 bp overlap
ChIP RH4 GSE83726.RAD21.RH4 187 bp overlap
RARA 1 dataset
ChIP hiPSC_D2 GSE132532.RARA.hiPSC_D2 320 bp overlap
RAX 1 dataset
Motif DE_60h DE_60h-RAX_MA0718.2 6 bp overlap
SCRT1 1 dataset
Motif DE_60h DE_60h-SCRT1_MA0743.3 10 bp overlap
SCRT2 1 dataset
Motif DE_60h DE_60h-SCRT2_MA0744.3 10 bp overlap
SMAD2 1 dataset
ChIP endoderm GSE29422.SMAD2.endoderm 238 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 361 bp overlap
SMAD4 1 dataset
ChIP endoderm GSE29422.SMAD4.endoderm 202 bp overlap
SMARCA4 5 datasets
ChIP 501-mel_SHCTR GSE61965.SMARCA4.501-mel_SHCTR 700 bp overlap
ChIP 501-mel_SHMITF GSE61965.SMARCA4.501-mel_SHMITF 147 bp overlap
ChIP 501-mel_SHSOX10 GSE61965.SMARCA4.501-mel_SHSOX10 77 bp overlap
ChIP 501-mel_SHSOX10 GSE61965.SMARCA4.501-mel_SHSOX10 419 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 57 bp overlap
SMC1A 2 datasets
ChIP Hep-G2 GSE76893.SMC1A.Hep-G2 179 bp overlap
ChIP MCF-7 GSE76893.SMC1A.MCF-7 147 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 371 bp overlap
SOX18 1 dataset
Motif DE_60h DE_60h-SOX18_MA1563.2 8 bp overlap
SRY 1 dataset
Motif DE_60h DE_60h-SRY_MA0084.2 7 bp overlap
STAG1 5 datasets
ChIP Hep-G2 ENCSR167MTG.STAG1.Hep-G2 123 bp overlap
ChIP HepG2 ENCFF843EBZ 301 bp overlap
ChIP MCF-7 ERP000209.STAG1.MCF-7 295 bp overlap
ChIP MCF-7_E2 ERP000209.STAG1.MCF-7_E2 236 bp overlap
ChIP MCF-7_E2_SHCTCF ERP000209.STAG1.MCF-7_E2_SHCTCF 322 bp overlap
TBX2 1 dataset
ChIP Kelly GSE94822.TBX2.Kelly 379 bp overlap
TFE3 1 dataset
ChIP K562 ENCFF697ABG 59 bp overlap
VENTX 1 dataset
Motif DE_60h DE_60h-VENTX_MA0724.1 9 bp overlap
ZFP57 1 dataset
ChIP hESC GSE115387.ZFP57.hESC 175 bp overlap