chr1 : 83,479,675 83,480,211
536 bp 90 TFs 0 linked genes
This 536 bp open chromatin element has no linked target genes and is bound by 90 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:83,474,675 – 83,485,211
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
90 transcription factors
Source
Cell type
ASCL1 2 datasets
Motif DE_48h DE_48h-ASCL1_MA1100.3 8 bp overlap
Motif DE_48h DE_48h-ASCL1_MA1631.2 9 bp overlap
Arid3a 1 dataset
Motif DE_48h DE_48h-Arid3a_MA0151.1 6 bp overlap
Ascl2 1 dataset
Motif DE_48h DE_48h-Ascl2_MA0816.1 10 bp overlap
BARX1 1 dataset
Motif DE_48h DE_48h-BARX1_MA0875.2 6 bp overlap
BARX2 1 dataset
Motif DE_48h DE_48h-BARX2_MA1471.2 9 bp overlap
BHLHE40 2 datasets
ChIP GM12878 ENCFF010ZUU 331 bp overlap
ChIP GM12878 ENCFF521IZR 336 bp overlap
BORCS8-MEF2B,MEF2B 1 dataset
ChIP GM12878 ENCFF427QAI 425 bp overlap
BSX 1 dataset
Motif DE_48h DE_48h-BSX_MA0876.2 6 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF364PUR 251 bp overlap
DLX1 1 dataset
Motif DE_48h DE_48h-DLX1_MA0879.3 6 bp overlap
DLX6 1 dataset
Motif DE_48h DE_48h-DLX6_MA0882.2 6 bp overlap
Dlx3 1 dataset
Motif DE_48h DE_48h-Dlx3_MA0880.2 6 bp overlap
Dlx4 1 dataset
Motif DE_48h DE_48h-Dlx4_MA0881.2 6 bp overlap
FIGLA 1 dataset
Motif DE_48h DE_48h-FIGLA_MA0820.2 6 bp overlap
FOXA1 1 dataset
Motif DE_48h DE_48h-FOXA1_MA0148.5 8 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 536 bp overlap
ChIP DE DE-FOXA2-2 536 bp overlap
FOXA3 1 dataset
Motif DE_48h DE_48h-FOXA3_MA1683.2 7 bp overlap
FOXD1 1 dataset
Motif DE_48h DE_48h-FOXD1_MA0031.2 7 bp overlap
FOXF2 1 dataset
Motif DE_48h DE_48h-FOXF2_MA0030.2 9 bp overlap
FOXG1 1 dataset
Motif DE_48h DE_48h-FOXG1_MA0613.1 8 bp overlap
FOXI1 1 dataset
Motif DE_48h DE_48h-FOXI1_MA0042.2 7 bp overlap
FOXK1 1 dataset
Motif DE_48h DE_48h-FOXK1_MA0852.3 7 bp overlap
FOXK2 1 dataset
Motif DE_48h DE_48h-FOXK2_MA1103.3 7 bp overlap
FOXL1 1 dataset
Motif DE_48h DE_48h-FOXL1_MA0033.2 7 bp overlap
FOXN3 1 dataset
Motif DE_48h DE_48h-FOXN3_MA1489.1 8 bp overlap
FOXO4 1 dataset
Motif DE_48h DE_48h-FOXO4_MA0848.1 7 bp overlap
FOXO6 1 dataset
Motif DE_48h DE_48h-FOXO6_MA0849.1 7 bp overlap
FOXP1 1 dataset
Motif DE_48h DE_48h-FOXP1_MA0481.4 7 bp overlap
FOXP2 1 dataset
Motif DE_48h DE_48h-FOXP2_MA0593.2 9 bp overlap
FOXP3 1 dataset
Motif DE_48h DE_48h-FOXP3_MA0850.1 7 bp overlap
FOXP4 1 dataset
Motif DE_48h DE_48h-FOXP4_MA2117.1 7 bp overlap
Foxf1 1 dataset
Motif DE_48h DE_48h-Foxf1_MA1606.2 7 bp overlap
Foxj2 1 dataset
Motif DE_48h DE_48h-Foxj2_MA0614.1 8 bp overlap
Foxo1 1 dataset
Motif DE_48h DE_48h-Foxo1_MA0480.3 7 bp overlap
Foxo3 1 dataset
Motif DE_48h DE_48h-Foxo3_MA0157.4 7 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 503 bp overlap
ChIP DE DE-GATA4-2 522 bp overlap
GATA6 3 datasets
ChIP DE DE-GATA6-1 511 bp overlap
ChIP DE DE-GATA6-2 536 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 247 bp overlap
GBX2 1 dataset
Motif DE_48h DE_48h-GBX2_MA0890.2 6 bp overlap
HESX1 1 dataset
Motif DE_48h DE_48h-HESX1_MA0894.2 6 bp overlap
HOXA10 1 dataset
Motif DE_48h DE_48h-HOXA10_MA0899.2 9 bp overlap
HOXA7 1 dataset
Motif DE_48h DE_48h-HOXA7_MA1498.3 6 bp overlap
HOXB13 1 dataset
Motif DE_48h DE_48h-HOXB13_MA0901.3 9 bp overlap
HOXD9 1 dataset
Motif DE_48h DE_48h-HOXD9_MA0913.3 9 bp overlap
Hmx1 1 dataset
Motif DE_48h DE_48h-Hmx1_MA0896.2 9 bp overlap
Hmx2 1 dataset
Motif DE_48h DE_48h-Hmx2_MA0897.2 15 bp overlap
Hmx3 1 dataset
Motif DE_48h DE_48h-Hmx3_MA0898.2 9 bp overlap
IKZF1 2 datasets
ChIP GM12878 ENCFF753XDO 284 bp overlap
ChIP GM12878 ENCFF753XDO 331 bp overlap
IKZF2 2 datasets
ChIP GM12878 ENCFF238LYK 510 bp overlap
ChIP GM12878 ENCFF918AID 512 bp overlap
IRF2 1 dataset
Motif DE_48h DE_48h-IRF2_MA0051.2 16 bp overlap
LBX2 1 dataset
Motif DE_48h DE_48h-LBX2_MA0699.2 6 bp overlap
LHX2 1 dataset
Motif DE_48h DE_48h-LHX2_MA0700.3 6 bp overlap
MSX1 1 dataset
Motif DE_48h DE_48h-MSX1_MA0666.3 6 bp overlap
MSX2 1 dataset
Motif DE_48h DE_48h-MSX2_MA0708.3 6 bp overlap
MTA2 1 dataset
ChIP GM12878 ENCFF615CWQ 220 bp overlap
MYOD1 1 dataset
Motif DE_48h DE_48h-MYOD1_MA0499.3 9 bp overlap
Msx3 1 dataset
Motif DE_48h DE_48h-Msx3_MA0709.2 6 bp overlap
NBN 1 dataset
ChIP GM12878 ENCFF213ZNN 436 bp overlap
NHLH1 1 dataset
Motif DE_48h DE_48h-NHLH1_MA0048.3 9 bp overlap
NHLH2 1 dataset
Motif DE_48h DE_48h-NHLH2_MA1529.2 16 bp overlap
Nobox 1 dataset
Motif DE_48h DE_48h-Nobox_MA0125.2 6 bp overlap
OSR2 1 dataset
Motif DE_48h DE_48h-OSR2_MA1646.2 8 bp overlap
PBX3 1 dataset
Motif DE_48h DE_48h-PBX3_MA1114.2 11 bp overlap
RAD51 1 dataset
ChIP GM12878 ENCFF916JXQ 383 bp overlap
RAX 1 dataset
Motif DE_48h DE_48h-RAX_MA0718.2 6 bp overlap
RELB 1 dataset
ChIP GM12878 ENCFF217ADF 183 bp overlap
RUNX3 1 dataset
ChIP GM12878 ENCFF395WHA 371 bp overlap
SMAD2_3 2 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 410 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 439 bp overlap
SNAI1 1 dataset
Motif DE_48h DE_48h-SNAI1_MA1558.2 7 bp overlap
SNAI2 1 dataset
Motif DE_48h DE_48h-SNAI2_MA0745.3 8 bp overlap
SNAI3 1 dataset
Motif DE_48h DE_48h-SNAI3_MA1559.2 9 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 207 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 362 bp overlap
SOX18 1 dataset
Motif DE_48h DE_48h-SOX18_MA1563.2 8 bp overlap
SRY 1 dataset
Motif DE_48h DE_48h-SRY_MA0084.2 7 bp overlap
TBX21 1 dataset
ChIP GM12878 ENCFF951HUW 465 bp overlap
TCF12 2 datasets
Motif DE_48h DE_48h-TCF12_MA1648.2 7 bp overlap
ChIP GM12878 ENCFF433DMU 121 bp overlap
TCF3 1 dataset
Motif DE_48h DE_48h-TCF3_MA0522.4 7 bp overlap
TCF4 1 dataset
Motif DE_48h DE_48h-TCF4_MA0830.3 8 bp overlap
TGIF1 1 dataset
Motif DE_48h DE_48h-TGIF1_MA0796.1 12 bp overlap
VENTX 1 dataset
Motif DE_48h DE_48h-VENTX_MA0724.1 9 bp overlap
ZEB1 1 dataset
Motif DE_48h DE_48h-ZEB1_MA0103.4 6 bp overlap
ZNF24 1 dataset
ChIP GM12878 ENCFF688STO 341 bp overlap
ZNF687 1 dataset
ChIP GM12878 ENCFF233SGE 306 bp overlap