chr4 : 139,567,181 – 139,567,804
623 bp 49 TFs 1 linked gene
This 623 bp open chromatin element is linked to ENSG00000286896 and is bound by 49 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
ENSG00000286896 823 bp At TSS Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr4:139,562,181 – 139,572,804
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
49 transcription factors
Source
Cell type
AFF1 1 dataset
ChIP K-562 ENCSR426URK.AFF1.K-562 220 bp overlap
ARNTL 1 dataset
ChIP U2OS_DMOG GSE85096.ARNTL.U2OS_DMOG 159 bp overlap
BCL6 2 datasets
ChIP B-cell_GERMINAL_CENTER GSE68349.BCL6.B-cell_GERMINAL_CENTER 262 bp overlap
ChIP SU-DHL-4 GSE119038.BCL6.SU-DHL-4 189 bp overlap
BRD4 2 datasets
ChIP retina_AB1-FW20 GSE86981.BRD4.retina_AB1-FW20 375 bp overlap
ChIP retina_AB1-FW23 GSE86981.BRD4.retina_AB1-FW23 483 bp overlap
CEBPA 1 dataset
ChIP Kasumi-1_CEBPA-ER_E2 GSE102697.CEBPA.Kasumi-1_CEBPA-ER_E2 136 bp overlap
CHD4 1 dataset
ChIP SCMC GSE155861.CHD4.SCMC 372 bp overlap
CRX 2 datasets
ChIP retina_Hu3 GSE137311.CRX.retina_Hu3 231 bp overlap
ChIP retina_Hu6 GSE137311.CRX.retina_Hu6 286 bp overlap
CTCF 1 dataset
ChIP anterior-temporal-cortex_fetal GSE116825.CTCF.anterior-temporal-cortex_fetal 154 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF093OYK 196 bp overlap
DUX4 1 dataset
ChIP WA01 GSE94322.DUX4.WA01 190 bp overlap
EED 1 dataset
ChIP ProEs GSE59087.EED.ProEs 143 bp overlap
ELF1 1 dataset
ChIP GM12878 ENCSR841NDX.ELF1.GM12878 228 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 268 bp overlap
ETS1 1 dataset
ChIP CTV-1_DSG GSE128835.ETS1.CTV-1_DSG 221 bp overlap
EVI1 1 dataset
ChIP SKH1 GSE87283.EVI1.SKH1 206 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 580 bp overlap
ChIP DE DE-FOXA2-2 530 bp overlap
GATA2 1 dataset
ChIP SKH1 GSE87283.GATA2.SKH1 169 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 515 bp overlap
ChIP DE DE-GATA4-2 447 bp overlap
GATA6 4 datasets
ChIP DE DE-GATA6-1 485 bp overlap
ChIP DE DE-GATA6-2 603 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 277 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 317 bp overlap
GTF2I 2 datasets
ChIP K562 ENCFF539BYI 230 bp overlap
ChIP WTC11 ENCFF255XXZ 267 bp overlap
HDAC2 1 dataset
ChIP WA01 ENCSR000AVB.HDAC2.WA01 218 bp overlap
JUN 1 dataset
ChIP 786-O GSE86092.JUN.786-O 71 bp overlap
KDM1A 11 datasets
ChIP H1 ENCFF696SGD 404 bp overlap
ChIP Kasumi-1_DMSO GSE71739.KDM1A.Kasumi-1_DMSO 244 bp overlap
ChIP Kasumi-1_GSK690 GSE71739.KDM1A.Kasumi-1_GSK690 256 bp overlap
ChIP Kasumi-1_RN1 GSE71739.KDM1A.Kasumi-1_RN1 253 bp overlap
ChIP OCI-Ly1 GSE107920.KDM1A.OCI-Ly1 145 bp overlap
ChIP SET-2_GSK GSE121424.KDM1A.SET-2_GSK 208 bp overlap
ChIP SKNO-1_GSK690 GSE71739.KDM1A.SKNO-1_GSK690 285 bp overlap
ChIP SKNO-1_RN1 GSE71739.KDM1A.SKNO-1_RN1 291 bp overlap
ChIP SU-DHL-4 GSE119038.KDM1A.SU-DHL-4 297 bp overlap
ChIP pancreatic-progenitor_GT GSE104840.KDM1A.pancreatic-progenitor_GT 241 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.KDM1A.pancreatic-progenitor_PP1 226 bp overlap
MAX 1 dataset
ChIP P493-6_CMYC_1H GSE36354.MAX.P493-6_CMYC_1H 166 bp overlap
NCOA2 1 dataset
ChIP MCF-7_E2 ERP000901.NCOA2.MCF-7_E2 60 bp overlap
NEUROD1 6 datasets
ChIP D283-Med GSE92582.NEUROD1.D283-Med 623 bp overlap
ChIP D283-Med_shNEUROD1-1579 GSE92582.NEUROD1.D283-Med_shNEUROD1-1579 623 bp overlap
ChIP D341-Med_shGFP GSE92582.NEUROD1.D341-Med_shGFP 623 bp overlap
ChIP D341-Med_shNEUROD1-1154 GSE92582.NEUROD1.D341-Med_shNEUROD1-1154 156 bp overlap
ChIP D341-Med_shNEUROD1-1154 GSE92582.NEUROD1.D341-Med_shNEUROD1-1154 400 bp overlap
ChIP D341-Med_shNEUROD1-1579 GSE92582.NEUROD1.D341-Med_shNEUROD1-1579 623 bp overlap
NRL 1 dataset
ChIP retina_Hu13 GSE137311.NRL.retina_Hu13 220 bp overlap
NUTM1 1 dataset
ChIP NMC24335 GSE96775.NUTM1.NMC24335 531 bp overlap
OTX2 1 dataset
ChIP retina_Hu7 GSE137311.OTX2.retina_Hu7 238 bp overlap
PGR 4 datasets
ChIP T-47D_PROG GSE68355.PGR.T-47D_PROG 210 bp overlap
ChIP T-47D_R5020 GSE68355.PGR.T-47D_R5020 275 bp overlap
ChIP T-47D_R5020-A1 GSE126859.PGR.T-47D_R5020-A1 241 bp overlap
ChIP T-47D_R5020-MTVL GSE126859.PGR.T-47D_R5020-MTVL 201 bp overlap
PHOX2B 2 datasets
ChIP CLB-Ga GSE90683.PHOX2B.CLB-Ga 326 bp overlap
ChIP SK-N-BE2-C GSE94822.PHOX2B.SK-N-BE2-C 251 bp overlap
PSIP1 1 dataset
ChIP T-REx-293 GSE117155.PSIP1.T-REx-293 101 bp overlap
RBM25 3 datasets
ChIP K-562 ENCSR791OZM.RBM25.K-562 240 bp overlap
ChIP K562 ENCFF248CGR 336 bp overlap
ChIP K562 ENCFF957ORK 336 bp overlap
RELA 4 datasets
ChIP BJAB GSE117250.RELA.BJAB 137 bp overlap
ChIP BJAB_1h-activation GSE117250.RELA.BJAB_1h-activation 197 bp overlap
ChIP GM12891 ENCSR000EAI.RELA.GM12891 191 bp overlap
ChIP GM18505 ENCSR000EAW.RELA.GM18505 141 bp overlap
RELB 1 dataset
ChIP L1236 GSE63736.RELB.L1236 103 bp overlap
RUNX1 1 dataset
ChIP MV4-11 GSE79899.RUNX1.MV4-11 198 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 275 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 479 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 408 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 369 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 419 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 324 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 413 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 306 bp overlap
SMAD3 1 dataset
ChIP BG03_DIFF_48H GSE36578.SMAD3.BG03_DIFF_48H 136 bp overlap
SMARCA4 2 datasets
ChIP CTV-1_DSG GSE128835.SMARCA4.CTV-1_DSG 311 bp overlap
ChIP CTV-1_FLAG GSE128835.SMARCA4.CTV-1_FLAG 281 bp overlap
SMARCA5 4 datasets
ChIP GM12878 ENCFF327LDR 187 bp overlap
ChIP GM12878 ENCSR706YUH.SMARCA5.GM12878 252 bp overlap
ChIP K-562 ENCSR895HSJ.SMARCA5.K-562 333 bp overlap
ChIP K562 ENCFF936KHY 369 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 388 bp overlap
SPI1 24 datasets
ChIP CD34_FETAL GSE70660.SPI1.CD34_FETAL 294 bp overlap
ChIP CTV-1_FLAG_15perc GSE128835.SPI1.CTV-1_FLAG_15perc 317 bp overlap
ChIP CTV-1_delQA GSE128835.SPI1.CTV-1_delQA 230 bp overlap
ChIP DC_96h_donorM GSE128834.SPI1.DC_96h_donorM 247 bp overlap
ChIP DC_LPS GSE123347.SPI1.DC_LPS 203 bp overlap
ChIP GM12878 ENCFF134LCP 297 bp overlap
ChIP GM12891 ENCFF563IUT 241 bp overlap
ChIP GM12891 ENCSR000BIJ.SPI1.GM12891 244 bp overlap
ChIP HL-60 ENCFF645GBT 271 bp overlap
ChIP K-562 GSE70482.SPI1.K-562 263 bp overlap
ChIP K-562 ENCSR000BGW.SPI1.K-562 189 bp overlap
ChIP K-562_NABUT GSE74999.SPI1.K-562_NABUT 191 bp overlap
ChIP K562 ENCFF410ORC 205 bp overlap
ChIP Kasumi-1_SICTR GSE60130.SPI1.Kasumi-1_SICTR 267 bp overlap
ChIP Kasumi-1_SIRUNX1ETO GSE60130.SPI1.Kasumi-1_SIRUNX1ETO 241 bp overlap
ChIP OCI-Ly7 GSE69558.SPI1.OCI-Ly7 222 bp overlap
ChIP THP-1 GSE128834.SPI1.THP-1 122 bp overlap
ChIP U-937 GSE128834.SPI1.U-937 253 bp overlap
ChIP monocyte GSE31621.SPI1.monocyte 139 bp overlap
ChIP monocyte_MACROPHAGE GSE31621.SPI1.monocyte_MACROPHAGE 126 bp overlap
ChIP primary-B-cell_donorA GSE128834.SPI1.primary-B-cell_donorA 267 bp overlap
ChIP primary-monocyte_18h_donorO GSE128834.SPI1.primary-monocyte_18h_donorO 179 bp overlap
ChIP primary-monocyte_donorA_ncMO GSE128834.SPI1.primary-monocyte_donorA_ncMO 118 bp overlap
ChIP primary-neutrophil_donorE GSE128834.SPI1.primary-neutrophil_donorE 108 bp overlap
SPIB 3 datasets
ChIP OCI-Ly10 GSE56857.SPIB.OCI-Ly10 143 bp overlap
ChIP OCI-Ly3 GSE56857.SPIB.OCI-Ly3 373 bp overlap
ChIP OCI-Ly3_SHCTR GSE56857.SPIB.OCI-Ly3_SHCTR 313 bp overlap
TBP 1 dataset
ChIP K-562 GSE55306.TBP.K-562 197 bp overlap
ZMYM3 2 datasets
ChIP GM12878 GSE97661.ZMYM3.GM12878 199 bp overlap
ChIP K-562 ENCSR102KIN.ZMYM3.K-562 189 bp overlap
ZNF143 1 dataset
ChIP FLP143HA_T4 GSE39263.ZNF143.FLP143HA_T4 130 bp overlap
ZNF205 1 dataset
ChIP HEK293T GSE78099.ZNF205.HEK293T 381 bp overlap
ZNF623 2 datasets
ChIP HEK293 ENCFF505YHP 358 bp overlap
ChIP HEK293 ENCSR022IZK.ZNF623.HEK293 380 bp overlap
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