chr4 : 120,918,643 120,919,166
523 bp 36 TFs 1 linked gene
This 523 bp open chromatin element is linked to PRDM5 and is bound by 36 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
PRDM5 3.6 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr4:120,913,643 – 120,924,166
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
36 transcription factors
Source
Cell type
AR 2 datasets
ChIP LNCaP-abl GSE39459.AR.LNCaP-abl 117 bp overlap
ChIP prostate-cancer_PDX_70 GSE130408.AR.prostate-cancer_PDX_70 170 bp overlap
BRD2 2 datasets
ChIP THP-1_DMSO GSE138084.BRD2.THP-1_DMSO 339 bp overlap
ChIP THP-1_iBET-BD1 GSE138084.BRD2.THP-1_iBET-BD1 276 bp overlap
BRD4 1 dataset
ChIP MM1-S GSE43743.BRD4.MM1-S 294 bp overlap
CTCF 4 datasets
ChIP C4-2B ENCFF821XVN 52 bp overlap
ChIP HCT-116 GSE131606.CTCF.HCT-116 104 bp overlap
ChIP glutamatergic neuron ENCFF816BTR 303 bp overlap
ChIP keratinocyte GSE154221.CTCF.keratinocyte 226 bp overlap
ESRRA 1 dataset
ChIP BT-474 GSE81651.ESRRA.BT-474 169 bp overlap
FEZF1 1 dataset
ChIP HEK293 GSE76494.FEZF1.HEK293 210 bp overlap
FEZF2 1 dataset
Motif DE_12h DE_12h-FEZF2_MA2341.1 8 bp overlap
FOXA1 2 datasets
ChIP prostate-cancer_PDX_189-3 GSE130408.FOXA1.prostate-cancer_PDX_189-3 95 bp overlap
ChIP prostate_2483_T GSE130408.FOXA1.prostate_2483_T 162 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 121 bp overlap
ChIP DE DE-FOXA2-2 92 bp overlap
GRHL2 1 dataset
Motif DE_12h DE_12h-GRHL2_MA1105.3 8 bp overlap
HNF4A 1 dataset
Motif DE_12h DE_12h-HNF4A_MA0114.5 9 bp overlap
HNF4G 1 dataset
Motif DE_12h DE_12h-HNF4G_MA0484.3 9 bp overlap
HOXB13 6 datasets
ChIP prostate-cancer_PDX_70 GSE130408.HOXB13.prostate-cancer_PDX_70 116 bp overlap
ChIP prostate_2078 GSE130408.HOXB13.prostate_2078 205 bp overlap
ChIP prostate_2483_T GSE130408.HOXB13.prostate_2483_T 253 bp overlap
ChIP prostate_2484_T GSE130408.HOXB13.prostate_2484_T 255 bp overlap
ChIP prostate_P1_T GSE130408.HOXB13.prostate_P1_T 271 bp overlap
ChIP prostate_P29_T GSE130408.HOXB13.prostate_P29_T 419 bp overlap
IKZF2 1 dataset
Motif DE_12h DE_12h-IKZF2_MA2326.1 6 bp overlap
MAFB 1 dataset
ChIP islet ERP004003.MAFB.islet 224 bp overlap
MAFK 1 dataset
ChIP OCI-Ly7 GSE47784.MAFK.OCI-Ly7 285 bp overlap
MEIS1 1 dataset
Motif DE_12h DE_12h-MEIS1_MA0498.3 5 bp overlap
NFATC3 1 dataset
Motif DE_12h DE_12h-NFATC3_MA0625.3 6 bp overlap
Nfatc1 1 dataset
Motif DE_12h DE_12h-Nfatc1_MA0624.3 6 bp overlap
PRDM9 1 dataset
Motif DE_12h DE_12h-PRDM9_MA1723.2 20 bp overlap
RBPJ 1 dataset
Motif DE_12h DE_12h-RBPJ_MA1116.2 6 bp overlap
RUNX1 1 dataset
ChIP SKNO-1 GSE23730.RUNX1.SKNO-1 200 bp overlap
SIN3A 1 dataset
ChIP SK-N-SH ENCSR000BPB.SIN3A.SK-N-SH 143 bp overlap
SMC3 1 dataset
ChIP GP5D GSE51234.SMC3.GP5D 88 bp overlap
SPI1 3 datasets
ChIP HL-60 ENCFF645GBT 267 bp overlap
ChIP Kasumi-1_SIRUNX1ETO GSE60130.SPI1.Kasumi-1_SIRUNX1ETO 218 bp overlap
ChIP primary-neutrophil_donorE GSE128834.SPI1.primary-neutrophil_donorE 97 bp overlap
STAT1 1 dataset
Motif DE_12h DE_12h-STAT1_MA0137.4 9 bp overlap
STAT3 1 dataset
ChIP HCC1187 GSE152203.STAT3.HCC1187 310 bp overlap
TBX5 1 dataset
Motif DE_12h DE_12h-TBX5_MA0807.1 8 bp overlap
Thap11 1 dataset
Motif DE_12h DE_12h-Thap11_MA1573.2 14 bp overlap
ZNF140 1 dataset
Motif DE_12h DE_12h-ZNF140_MA1589.2 19 bp overlap
ZNF189 1 dataset
Motif DE_12h DE_12h-ZNF189_MA1725.2 9 bp overlap
ZNF362 2 datasets
ChIP HEK293 ENCFF436CGE 192 bp overlap
ChIP HEK293 ENCSR715QNO.ZNF362.HEK293 116 bp overlap
ZNF416 1 dataset
Motif DE_12h DE_12h-ZNF416_MA1979.2 10 bp overlap
ZNF768 2 datasets
Motif DE_12h DE_12h-ZNF768_MA1731.2 9 bp overlap
Motif DE_12h DE_12h-ZNF768_MA1731.2 9 bp overlap
Zfp809 1 dataset
Motif DE_12h DE_12h-Zfp809_MA2125.1 9 bp overlap