chr4 : 116,796,125 116,796,689
564 bp 63 TFs 0 linked genes
This 564 bp open chromatin element has no linked target genes and is bound by 63 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr4:116,791,125 – 116,801,689
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
63 transcription factors
Source
Cell type
ASCL1 1 dataset
Motif DE_12h DE_12h-ASCL1_MA1631.2 9 bp overlap
ATF3 4 datasets
ChIP H1 ENCFF852GZY 207 bp overlap
ChIP HCT-116_CAMP GSE74355.ATF3.HCT-116_CAMP 149 bp overlap
ChIP HCT-116_DMSO GSE74355.ATF3.HCT-116_DMSO 161 bp overlap
ChIP WA01 ENCSR000BKC.ATF3.WA01 156 bp overlap
ATF4 2 datasets
Motif DE_12h DE_12h-ATF4_MA0833.3 10 bp overlap
Motif ES_0h ES_0h-ATF4_MA0833.3 10 bp overlap
BATF 1 dataset
ChIP OCI-Ly10 GSE56857.BATF.OCI-Ly10 220 bp overlap
CEBPA 2 datasets
ChIP Hep-G2 ERP000209.CEBPA.Hep-G2 148 bp overlap
ChIP T-47D_siCtrl GSE132649.CEBPA.T-47D_siCtrl 235 bp overlap
CEBPB 6 datasets
ChIP H1 ENCFF871PTR 217 bp overlap
ChIP Hep-G2 ENCSR000EEX.CEBPB.Hep-G2 119 bp overlap
ChIP Ishikawa ENCSR000BTT.CEBPB.Ishikawa 117 bp overlap
ChIP MCF-7 ENCFF772ZTQ 230 bp overlap
ChIP MCF-7 ENCSR000BSR.CEBPB.MCF-7 171 bp overlap
ChIP WA01 ENCSR000EBV.CEBPB.WA01 231 bp overlap
CEBPG 2 datasets
Motif DE_12h DE_12h-CEBPG_MA1636.2 10 bp overlap
Motif ES_0h ES_0h-CEBPG_MA1636.2 10 bp overlap
CREB1 1 dataset
ChIP WA01 ENCSR000BSN.CREB1.WA01 135 bp overlap
CTCF 47 datasets
ChIP A-673 ENCSR611JJS.CTCF.A-673 208 bp overlap
ChIP BE2C ENCFF757SRF 247 bp overlap
ChIP BE2C ENCSR000DQD.CTCF.BE2C 192 bp overlap
Motif DE_12h DE_12h-CTCF_MA1930.2 33 bp overlap
Motif ES_0h ES_0h-CTCF_MA1930.2 33 bp overlap
ChIP GM04648 GSE148179.CTCF.GM04648 135 bp overlap
ChIP GM23338 ENCFF531QOI 277 bp overlap
ChIP GM23338 ENCFF772DML 201 bp overlap
ChIP H1 ENCFF230QSV 165 bp overlap
ChIP H1 ENCFF764RHO 86 bp overlap
ChIP H9 ENCFF152GTF 221 bp overlap
ChIP HAP1 GSE152721.CTCF.HAP1 165 bp overlap
ChIP HAP1_WT GSE126634.CTCF.HAP1_WT 228 bp overlap
ChIP HAP1_WaplKO-33 GSE94992.CTCF.HAP1_WaplKO-33 142 bp overlap
ChIP HAP1_WaplKO-33_SCC4KO GSE94992.CTCF.HAP1_WaplKO-33_SCC4KO 201 bp overlap
ChIP HAP1_clone21 GSE152721.CTCF.HAP1_clone21 253 bp overlap
ChIP HAP1_clone21_TSS-CRISPR GSE152721.CTCF.HAP1_clone21_TSS-CRISPR 163 bp overlap
ChIP HCT-116 ENCSR240PRQ.CTCF.HCT-116 206 bp overlap
ChIP HCT-116 GSE131606.CTCF.HCT-116 192 bp overlap
ChIP HCT116 ENCFF003KHP 250 bp overlap
ChIP HEC-1-B_WT GSE140868.CTCF.HEC-1-B_WT 171 bp overlap
ChIP HEK293 ENCSR000DTW.CTCF.HEK293 115 bp overlap
ChIP HUDEP-2_30min GSE104676.CTCF.HUDEP-2_30min 151 bp overlap
ChIP Hep-G2 ENCSR000DUG.CTCF.Hep-G2 100 bp overlap
ChIP K-562_7140 GSE131349.CTCF.K-562_7140 148 bp overlap
ChIP MCF-10A GSE98551.CTCF.MCF-10A 174 bp overlap
ChIP MCF-7 ENCSR000DWH.CTCF.MCF-7 203 bp overlap
ChIP PC-3 ENCSR359LOD.CTCF.PC-3 307 bp overlap
ChIP SK-N-SH ENCSR541AMF.CTCF.SK-N-SH 112 bp overlap
ChIP WA01 ENCSR000DLK.CTCF.WA01 161 bp overlap
ChIP WA01_NEUR GSE52457.CTCF.WA01_NEUR 156 bp overlap
ChIP brain ENCFF685VRG 476 bp overlap
ChIP endodermal cell ENCFF471YCZ 190 bp overlap
ChIP endothelial cell ENCFF663LIE 373 bp overlap
ChIP endothelial cell ENCFF663LIE 564 bp overlap
ChIP glutamatergic neuron ENCFF816BTR 434 bp overlap
ChIP hESC_D0 GSE116862.CTCF.hESC_D0 206 bp overlap
ChIP hESC_D5 GSE116862.CTCF.hESC_D5 189 bp overlap
ChIP hiPSC_IB12 GSE106870.CTCF.hiPSC_IB12 123 bp overlap
ChIP hiPSC_IB7 GSE106870.CTCF.hiPSC_IB7 142 bp overlap
ChIP hiPSC_IV8 GSE106870.CTCF.hiPSC_IV8 140 bp overlap
ChIP keratinocyte ENCSR000DWX.CTCF.keratinocyte 167 bp overlap
ChIP neural progenitor cell ENCFF420RBO 243 bp overlap
ChIP neural_progenitor ENCSR125NBL.CTCF.neural_progenitor 199 bp overlap
ChIP primary-epidermal-keratinocyte_diff_d0 GSE84657.CTCF.primary-epidermal-keratinocyte_diff_d0 158 bp overlap
ChIP progenitor cell of endocrine pancreas ENCFF492KHV 246 bp overlap
ChIP type B pancreatic cell ENCFF910FNQ 305 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF274GAT 281 bp overlap
EHF 1 dataset
Motif DE_12h DE_12h-EHF_MA0598.4 9 bp overlap
ELF2 2 datasets
Motif DE_12h DE_12h-ELF2_MA1483.3 10 bp overlap
Motif ES_0h ES_0h-ELF2_MA1483.3 10 bp overlap
ELF3 2 datasets
Motif DE_12h DE_12h-ELF3_MA0640.3 9 bp overlap
ChIP PDAC GSE64557.ELF3.PDAC 243 bp overlap
ETV1 2 datasets
Motif DE_12h DE_12h-ETV1_MA0761.3 9 bp overlap
Motif ES_0h ES_0h-ETV1_MA0761.3 9 bp overlap
ETV2::FOXI1 2 datasets
Motif DE_12h DE_12h-ETV2FOXI1_MA1942.2 11 bp overlap
Motif ES_0h ES_0h-ETV2FOXI1_MA1942.2 11 bp overlap
ETV7 1 dataset
Motif DE_12h DE_12h-ETV7_MA1708.2 9 bp overlap
FIGLA 1 dataset
Motif DE_12h DE_12h-FIGLA_MA0820.2 6 bp overlap
FOXJ2::ELF1 2 datasets
Motif DE_12h DE_12h-FOXJ2ELF1_MA1952.2 11 bp overlap
Motif ES_0h ES_0h-FOXJ2ELF1_MA1952.2 11 bp overlap
FOXO1::ELK1 2 datasets
Motif DE_12h DE_12h-FOXO1ELK1_MA1954.2 13 bp overlap
Motif ES_0h ES_0h-FOXO1ELK1_MA1954.2 13 bp overlap
HLF 3 datasets
Motif DE_12h DE_12h-HLF_MA0043.4 9 bp overlap
Motif ES_0h ES_0h-HLF_MA0043.4 9 bp overlap
ChIP HepG2 ENCFF854JLR 232 bp overlap
HOXB4 2 datasets
Motif DE_12h DE_12h-HOXB4_MA1499.2 6 bp overlap
Motif ES_0h ES_0h-HOXB4_MA1499.2 6 bp overlap
HOXC4 2 datasets
Motif DE_12h DE_12h-HOXC4_MA1504.2 6 bp overlap
Motif ES_0h ES_0h-HOXC4_MA1504.2 6 bp overlap
HOXD3 2 datasets
Motif DE_12h DE_12h-HOXD3_MA0912.2 8 bp overlap
Motif ES_0h ES_0h-HOXD3_MA0912.2 8 bp overlap
HOXD4 2 datasets
Motif DE_12h DE_12h-HOXD4_MA1507.2 6 bp overlap
Motif ES_0h ES_0h-HOXD4_MA1507.2 6 bp overlap
Hnf1A 1 dataset
Motif DE_12h DE_12h-Hnf1A_MA1991.2 10 bp overlap
IKZF2 2 datasets
Motif DE_12h DE_12h-IKZF2_MA2326.1 6 bp overlap
Motif ES_0h ES_0h-IKZF2_MA2326.1 6 bp overlap
Ikzf3 2 datasets
Motif DE_12h DE_12h-Ikzf3_MA1992.2 9 bp overlap
Motif ES_0h ES_0h-Ikzf3_MA1992.2 9 bp overlap
JUN 2 datasets
Motif DE_12h DE_12h-JUN_MA0488.2 10 bp overlap
Motif ES_0h ES_0h-JUN_MA0488.2 10 bp overlap
JUND 4 datasets
Motif DE_12h DE_12h-JUND_MA0492.2 11 bp overlap
Motif ES_0h ES_0h-JUND_MA0492.2 11 bp overlap
ChIP H1 ENCFF010YXS 266 bp overlap
ChIP WA01 ENCSR000EBZ.JUND.WA01 178 bp overlap
MAFK 2 datasets
ChIP Hep-G2 ENCSR000EDZ.MAFK.Hep-G2 89 bp overlap
ChIP HepG2 ENCFF743ZOF 176 bp overlap
MEIS1 1 dataset
Motif DE_12h DE_12h-MEIS1_MA0498.3 5 bp overlap
NFIL3 2 datasets
Motif DE_12h DE_12h-NFIL3_MA0025.3 9 bp overlap
Motif ES_0h ES_0h-NFIL3_MA0025.3 9 bp overlap
POU6F1 2 datasets
Motif DE_12h DE_12h-POU6F1_MA1549.2 7 bp overlap
Motif ES_0h ES_0h-POU6F1_MA1549.2 7 bp overlap
POU6F2 2 datasets
Motif DE_12h DE_12h-POU6F2_MA0793.2 9 bp overlap
Motif ES_0h ES_0h-POU6F2_MA0793.2 9 bp overlap
PRDM9 1 dataset
Motif DE_12h DE_12h-PRDM9_MA1723.2 20 bp overlap
Prdm15 1 dataset
Motif DE_12h DE_12h-Prdm15_MA1616.2 11 bp overlap
Ptf1A 1 dataset
Motif DE_12h DE_12h-Ptf1A_MA1620.2 8 bp overlap
RAD21 4 datasets
ChIP H1 ENCFF698EWO 207 bp overlap
ChIP H1 ENCFF967OJF 209 bp overlap
ChIP hiPSC_IB12 GSE106870.RAD21.hiPSC_IB12 143 bp overlap
ChIP hiPSC_IV8 GSE106870.RAD21.hiPSC_IV8 132 bp overlap
RELA 1 dataset
ChIP LNCaP_SICTR_TNFA GSE83860.RELA.LNCaP_SICTR_TNFA 147 bp overlap
SNAI1 1 dataset
Motif DE_12h DE_12h-SNAI1_MA1558.2 7 bp overlap
SNAI3 1 dataset
Motif DE_12h DE_12h-SNAI3_MA1559.2 9 bp overlap
SP5 1 dataset
Motif DE_12h DE_12h-SP5_MA1965.2 6 bp overlap
SPIB 1 dataset
Motif DE_12h DE_12h-SPIB_MA0081.3 13 bp overlap
Spi1 1 dataset
Motif DE_12h DE_12h-Spi1_MA0080.7 13 bp overlap
TBX5 3 datasets
Motif DE_12h DE_12h-TBX5_MA0807.1 8 bp overlap
Motif DE_12h DE_12h-TBX5_MA0807.1 8 bp overlap
Motif ES_0h ES_0h-TBX5_MA0807.1 8 bp overlap
TCF12 1 dataset
Motif DE_12h DE_12h-TCF12_MA1648.2 7 bp overlap
TCF3 1 dataset
Motif DE_12h DE_12h-TCF3_MA0522.4 7 bp overlap
TCF4 1 dataset
Motif DE_12h DE_12h-TCF4_MA0830.3 8 bp overlap
TCF7L1 1 dataset
Motif DE_12h DE_12h-TCF7L1_MA1421.1 12 bp overlap
THAP1 1 dataset
Motif DE_12h DE_12h-THAP1_MA0597.3 8 bp overlap
THRB 1 dataset
Motif DE_12h DE_12h-THRB_MA1576.2 18 bp overlap
ZEB1 1 dataset
Motif DE_12h DE_12h-ZEB1_MA0103.4 6 bp overlap
ZFP14 1 dataset
Motif DE_12h DE_12h-ZFP14_MA1972.1 15 bp overlap
ZIM3 2 datasets
Motif DE_12h DE_12h-ZIM3_MA1709.2 11 bp overlap
Motif ES_0h ES_0h-ZIM3_MA1709.2 11 bp overlap
ZNF263 1 dataset
Motif DE_12h DE_12h-ZNF263_MA0528.3 7 bp overlap
ZNF547 2 datasets
Motif DE_12h DE_12h-ZNF547_MA2334.1 13 bp overlap
Motif ES_0h ES_0h-ZNF547_MA2334.1 13 bp overlap
ZNF677 1 dataset
Motif DE_12h DE_12h-ZNF677_MA2101.1 12 bp overlap
Zfp335 2 datasets
Motif DE_12h DE_12h-Zfp335_MA2002.2 7 bp overlap
Motif ES_0h ES_0h-Zfp335_MA2002.2 7 bp overlap
Zic1::Zic2 2 datasets
Motif DE_12h DE_12h-Zic1Zic2_MA1628.2 7 bp overlap
Motif ES_0h ES_0h-Zic1Zic2_MA1628.2 7 bp overlap
Zic2 2 datasets
Motif DE_12h DE_12h-Zic2_MA1629.2 9 bp overlap
Motif ES_0h ES_0h-Zic2_MA1629.2 9 bp overlap
Zic3 2 datasets
Motif DE_12h DE_12h-Zic3_MA0697.3 7 bp overlap
Motif ES_0h ES_0h-Zic3_MA0697.3 7 bp overlap