chr4 : 28,291,725 28,292,308
583 bp 69 TFs 0 linked genes
This 583 bp open chromatin element has no linked target genes and is bound by 69 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr4:28,286,725 – 28,297,308
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
69 transcription factors
Source
Cell type
BARX1 1 dataset
Motif DE_12h DE_12h-BARX1_MA0875.2 6 bp overlap
BRD4 1 dataset
ChIP HCC1395 GSE63581.BRD4.HCC1395 472 bp overlap
BSX 1 dataset
Motif DE_12h DE_12h-BSX_MA0876.2 6 bp overlap
CHD7 1 dataset
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 211 bp overlap
CREBBP 1 dataset
ChIP MCF-7 ERP000901.CREBBP.MCF-7 132 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF093OYK 222 bp overlap
DLX1 1 dataset
Motif DE_12h DE_12h-DLX1_MA0879.3 6 bp overlap
DLX6 1 dataset
Motif DE_12h DE_12h-DLX6_MA0882.2 6 bp overlap
DMRTA2 1 dataset
Motif DE_12h DE_12h-DMRTA2_MA1478.2 6 bp overlap
DPF2 1 dataset
ChIP GM12878 ENCSR509FWH.DPF2.GM12878 207 bp overlap
DUX4 1 dataset
Motif DE_12h DE_12h-DUX4_MA0468.1 11 bp overlap
DUXA 1 dataset
Motif DE_12h DE_12h-DUXA_MA0884.2 13 bp overlap
Dlx2 1 dataset
Motif DE_12h DE_12h-Dlx2_MA0885.3 8 bp overlap
Dlx3 1 dataset
Motif DE_12h DE_12h-Dlx3_MA0880.2 6 bp overlap
Dlx4 1 dataset
Motif DE_12h DE_12h-Dlx4_MA0881.2 6 bp overlap
Dlx5 1 dataset
Motif DE_12h DE_12h-Dlx5_MA1476.3 8 bp overlap
EN2 1 dataset
Motif DE_12h DE_12h-EN2_MA0642.3 7 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 178 bp overlap
EP300 1 dataset
ChIP H1 ENCFF927IYK 297 bp overlap
ESR1 1 dataset
ChIP MCF-7_E2-320min-ERalpha GSE94023.ESR1.MCF-7_E2-320min-ERalpha 170 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 462 bp overlap
ChIP DE DE-FOXA2-2 314 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 499 bp overlap
ChIP DE DE-GATA4-2 523 bp overlap
GATA6 4 datasets
ChIP DE DE-GATA6-1 482 bp overlap
ChIP DE DE-GATA6-2 554 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 306 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 289 bp overlap
GBX1 1 dataset
Motif DE_12h DE_12h-GBX1_MA0889.2 7 bp overlap
GBX2 1 dataset
Motif DE_12h DE_12h-GBX2_MA0890.2 6 bp overlap
HESX1 1 dataset
Motif DE_12h DE_12h-HESX1_MA0894.2 6 bp overlap
HOXA7 1 dataset
Motif DE_12h DE_12h-HOXA7_MA1498.3 6 bp overlap
IKZF1 1 dataset
ChIP GM12878 ENCFF753XDO 553 bp overlap
IRF7 1 dataset
Motif DE_12h DE_12h-IRF7_MA0772.2 13 bp overlap
LBX1 1 dataset
Motif DE_12h DE_12h-LBX1_MA0618.2 7 bp overlap
LBX2 1 dataset
Motif DE_12h DE_12h-LBX2_MA0699.2 6 bp overlap
LHX2 1 dataset
Motif DE_12h DE_12h-LHX2_MA0700.3 6 bp overlap
LHX9 1 dataset
Motif DE_12h DE_12h-LHX9_MA0701.3 7 bp overlap
MSX1 1 dataset
Motif DE_12h DE_12h-MSX1_MA0666.3 6 bp overlap
MSX2 1 dataset
Motif DE_12h DE_12h-MSX2_MA0708.3 6 bp overlap
MYB 1 dataset
Motif DE_12h DE_12h-MYB_MA0100.4 6 bp overlap
Msx3 1 dataset
Motif DE_12h DE_12h-Msx3_MA0709.2 6 bp overlap
NANOG 1 dataset
ChIP hESC GSE18292.NANOG.hESC 126 bp overlap
NFKB1 3 datasets
Motif DE_12h DE_12h-NFKB1_MA0105.4 13 bp overlap
Motif DE_12h DE_12h-NFKB1_MA0105.4 13 bp overlap
ChIP L1236 GSE63736.NFKB1.L1236 119 bp overlap
NFKB2 2 datasets
Motif DE_12h DE_12h-NFKB2_MA0778.2 11 bp overlap
Motif DE_12h DE_12h-NFKB2_MA0778.2 11 bp overlap
NR3C1 1 dataset
ChIP BEAS-2B_TNF_IA1 GSE125623.NR3C1.BEAS-2B_TNF_IA1 282 bp overlap
Nobox 1 dataset
Motif DE_12h DE_12h-Nobox_MA0125.2 6 bp overlap
ONECUT3 1 dataset
Motif DE_12h DE_12h-ONECUT3_MA0757.2 12 bp overlap
PHOX2A 1 dataset
Motif DE_12h DE_12h-PHOX2A_MA0713.1 11 bp overlap
PROP1 1 dataset
Motif DE_12h DE_12h-PROP1_MA0715.1 11 bp overlap
PRRX2 1 dataset
Motif DE_12h DE_12h-PRRX2_MA0075.4 7 bp overlap
RAX 1 dataset
Motif DE_12h DE_12h-RAX_MA0718.2 6 bp overlap
RBPJ 1 dataset
Motif DE_12h DE_12h-RBPJ_MA1116.2 6 bp overlap
REL 2 datasets
Motif DE_12h DE_12h-REL_MA0101.1 10 bp overlap
Motif DE_12h DE_12h-REL_MA0101.1 10 bp overlap
RELA 6 datasets
Motif DE_12h DE_12h-RELA_MA0107.1 10 bp overlap
ChIP Detroit-562_TNFa GSE91018.RELA.Detroit-562_TNFa 239 bp overlap
ChIP FaDu_LPS GSE132018.RELA.FaDu_LPS 408 bp overlap
ChIP LNCaP_DHT_TNFA GSE83860.RELA.LNCaP_DHT_TNFA 166 bp overlap
ChIP LNCaP_SIFOXA1_TNFA GSE83860.RELA.LNCaP_SIFOXA1_TNFA 174 bp overlap
ChIP SGBS_TNF GSE64233.RELA.SGBS_TNF 266 bp overlap
RELB 1 dataset
ChIP GM12878 ENCSR387QUV.RELB.GM12878 318 bp overlap
RORA 1 dataset
Motif DE_12h DE_12h-RORA_MA0072.2 11 bp overlap
RORB 1 dataset
Motif DE_12h DE_12h-RORB_MA1150.2 10 bp overlap
RORC 1 dataset
Motif DE_12h DE_12h-RORC_MA1151.2 10 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 489 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 523 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 454 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 354 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 523 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 337 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 414 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 481 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 209 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 399 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 243 bp overlap
TCF3 1 dataset
ChIP NPC GSE154479.TCF3.NPC 330 bp overlap
Yy1 1 dataset
Motif DE_12h DE_12h-Yy1_MA0095.4 8 bp overlap
ZNF24 1 dataset
Motif DE_12h DE_12h-ZNF24_MA1124.1 13 bp overlap
ZNF257 1 dataset
Motif DE_12h DE_12h-ZNF257_MA1710.2 10 bp overlap
ZNF76 1 dataset
Motif DE_12h DE_12h-ZNF76_MA1716.2 17 bp overlap
Zic2 1 dataset
Motif DE_12h DE_12h-Zic2_MA1629.2 9 bp overlap
Zic3 1 dataset
Motif DE_12h DE_12h-Zic3_MA0697.3 7 bp overlap